Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 1.4e-143 513.1 284 100.0
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 4.9e-96 355.1 274 62.0
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 4.9e-96 355.1 274 62.0
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 8.3e-96 354.4 274 61.7
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 6.2e-67 258.5 284 44.7
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 8.1e-67 258.1 284 44.7
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 3.1e-66 256.1 282 44.0
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 2.6e-65 253.1 297 44.1
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 7.6e-65 251.5 253 46.6
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 7.6e-65 251.5 267 44.9
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 7.6e-65 251.5 282 44.3
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 9.9e-65 251.1 256 48.0
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 9.9e-65 251.1 253 47.4
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 9.9e-65 251.1 290 44.5
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 1.3e-64 250.8 283 43.1
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 2.2e-64 250.0 284 41.9
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 2.2e-64 250.0 288 44.1
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 4.9e-64 248.8 280 44.3
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 6.4e-64 248.4 256 47.7
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 6.4e-64 248.4 290 44.8
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 1.4e-63 247.3 284 43.0
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 1.9e-63 246.9 265 46.0
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 2.4e-63 246.5 288 42.7
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 2.4e-63 246.5 282 43.6
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 5.4e-63 245.4 250 46.4
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 5.4e-63 245.4 255 47.1
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 5.4e-63 245.4 271 44.6
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 9.3e-63 244.6 281 42.3
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 9.3e-63 244.6 276 43.5
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 9.3e-63 244.6 251 49.4
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 3.5e-62 242.7 251 49.0
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 7.8e-62 241.5 291 40.9
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 7.8e-62 241.5 292 40.8
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 7.8e-62 241.5 271 44.3
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 1.7e-61 240.4 282 42.2
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 2.3e-61 240.0 279 43.7
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 3.0e-61 239.6 277 43.7
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 3.9e-61 239.2 251 45.0
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 6.6e-61 238.4 289 43.9
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 6.6e-61 238.4 255 44.3
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 1.1e-60 237.7 283 42.8
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 1.5e-60 237.3 286 41.3
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 1.9e-60 236.9 292 41.4
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 3.3e-60 236.1 272 42.6
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 4.3e-60 235.7 280 43.6
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 4.3e-60 235.7 282 41.8
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 7.3e-60 235.0 281 41.6
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 7.3e-60 235.0 251 43.8
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 9.6e-60 234.6 253 42.7
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 9.6e-60 234.6 251 44.6
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 1.3e-59 234.2 263 44.9
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 1.3e-59 234.2 258 43.8
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.3e-59 234.2 285 42.1
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.3e-59 234.2 252 46.4
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 2.1e-59 233.4 250 44.0
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 4.8e-59 232.3 253 43.1
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 4.8e-59 232.3 251 45.0
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 6.2e-59 231.9 279 40.9
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 6.2e-59 231.9 256 44.1
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.1e-58 231.1 291 41.9
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 1.4e-58 230.7 285 42.8
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 1.4e-58 230.7 291 41.9
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 4.0e-58 229.2 287 41.1
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 9.0e-58 228.0 250 44.8
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 2.6e-57 226.5 300 39.0
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 3.4e-57 226.1 284 41.2
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 5.8e-57 225.3 282 41.8
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 5.8e-57 225.3 286 38.5
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 7.6e-57 224.9 233 45.9
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 4.9e-56 222.2 285 38.9
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 4.9e-56 222.2 279 42.7
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 8.4e-56 221.5 285 39.3
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 8.4e-56 221.5 249 44.2
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 1.1e-55 221.1 285 39.3
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 1.1e-55 221.1 285 39.3
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 3.2e-55 219.5 287 39.4
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 4.2e-55 219.2 264 44.3
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 7.1e-55 218.4 287 39.4
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.2e-54 217.6 261 42.9
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 2.1e-54 216.9 296 37.8
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.7e-54 216.5 278 39.9
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 3.5e-54 216.1 343 36.2
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 6.0e-54 215.3 261 42.1
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 7.9e-54 214.9 267 40.4
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 1.0e-53 214.5 284 38.0
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.7e-53 213.8 296 37.8
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 3.0e-53 213.0 288 41.3
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 3.0e-53 213.0 244 41.0
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 3.9e-53 212.6 345 35.4
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 5.1e-53 212.2 262 40.5
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 5.1e-53 212.2 256 45.3
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.1e-52 211.1 270 40.0
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 1.1e-52 211.1 252 44.0
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 5.6e-52 208.8 255 44.7
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 7.4e-52 208.4 256 44.1
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 7.4e-52 208.4 256 44.1
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 1.3e-51 207.6 284 40.8
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 2.1e-51 206.8 248 42.3
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 4.8e-51 205.7 285 38.9
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 6.2e-51 205.3 261 41.0
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 6.2e-51 205.3 291 41.2
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 6.2e-51 205.3 182 52.2
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 1.1e-50 204.5 181 53.6
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 1.8e-50 203.8 246 43.5
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 2.0e-49 200.3 239 39.7
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 2.4e-47 193.4 287 36.6
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.6e-46 190.7 278 36.7
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 6.0e-46 188.7 384 30.5
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 2.5e-44 183.3 175 50.9
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 5.6e-44 182.2 213 44.1
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 9.6e-44 181.4 264 37.1
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 4.8e-43 179.1 175 50.3
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 2.4e-42 176.8 290 36.2
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 2.5e-39 166.8 185 45.4
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 7.9e-38 161.8 229 40.2
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.0e-37 161.4 223 39.9
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 9.6e-36 154.8 150 52.7
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 8.2e-35 151.8 251 35.5
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 9.0e-34 148.3 103 61.2
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 4.2e-31 139.4 182 38.5
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.5e-31 139.0 124 50.8
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.6e-30 137.5 264 31.8
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 8.7e-29 131.7 181 40.3
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.1e-26 123.2 191 39.8
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 3.4e-25 119.8 179 36.9
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.5e-23 113.6 191 34.6
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 5.5e-23 112.5 174 35.6
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.7e-22 110.2 182 36.8
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 4.6e-22 109.4 167 37.1
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 7.9e-22 108.6 183 33.9
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 4.3e-20 102.8 183 34.4
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 1.7e-19 100.9 141 40.4
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.4e-18 97.8 86 53.5
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 3.1e-18 96.7 249 27.3
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 2.6e-17 93.6 132 35.6
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 8.5e-16 88.6 125 33.6
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 1.9e-15 87.4 175 29.1
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 7.2e-15 85.5 162 34.0
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 9.4e-15 85.1 138 33.3
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 4.7e-14 82.8 64 56.2
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 4.7e-14 82.8 420 22.4
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 3.9e-13 79.7 132 32.6
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 3.3e-12 76.6 66 50.0
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 9.7e-12 75.1 138 31.2
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 9.7e-12 75.1 138 31.2
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.3e-11 74.7 152 29.6
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 4.8e-11 72.8 61 50.8
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 6.3e-11 72.4 178 26.4
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.0e-09 67.4 61 49.2
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.7e-06 57.0 218 21.1
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 2.7e-06 57.0 75 42.7
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 3.6e-06 56.6 38 63.2
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 4.7e-06 56.2 79 36.7
MCO01G198 Micromonas commoda HOM05D004374 ORTHO05D005430 6.1e-06 55.8 180 25.0
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 6.1e-06 55.8 76 35.5


User provided reference genes

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