Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 5.4e-54 214.2 114 100.0
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 1.2e-42 176.4 115 82.6
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 2.7e-29 132.1 117 63.2
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 6.0e-29 131.0 112 63.4
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 6.0e-29 131.0 114 65.8
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 6.0e-29 131.0 112 64.3
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 2.3e-28 129.0 114 64.9
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 6.6e-28 127.5 114 64.0
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 6.6e-28 127.5 115 61.7
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 8.6e-28 127.1 113 61.9
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 1.1e-27 126.7 114 63.2
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 1.1e-27 126.7 114 64.0
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 1.9e-27 125.9 114 64.0
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 2.5e-27 125.6 113 63.7
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 2.5e-27 125.6 112 61.6
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 9.6e-27 123.6 116 61.2
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 1.2e-26 123.2 113 62.8
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 2.1e-26 122.5 115 60.9
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 2.8e-26 122.1 111 64.0
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 3.6e-26 121.7 114 64.0
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 3.6e-26 121.7 113 62.8
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 3.6e-26 121.7 114 62.3
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 2.4e-25 119.0 112 61.6
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 4.0e-25 118.2 113 62.8
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 5.2e-25 117.9 115 60.9
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 5.2e-25 117.9 111 59.5
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 6.9e-25 117.5 113 61.9
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 6.9e-25 117.5 113 61.1
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 8.9e-25 117.1 112 61.6
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 1.2e-24 116.7 115 60.0
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 1.5e-24 116.3 122 59.0
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 2.6e-24 115.5 113 57.5
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 2.6e-24 115.5 113 62.8
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 3.4e-24 115.2 113 61.9
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 5.8e-24 114.4 114 59.6
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 5.8e-24 114.4 115 57.4
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 7.6e-24 114.0 114 64.0
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 7.6e-24 114.0 114 61.4
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 9.9e-24 113.6 116 56.9
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 1.3e-23 113.2 111 57.7
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.3e-23 113.2 114 58.8
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 1.7e-23 112.8 112 59.8
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 1.7e-23 112.8 111 57.7
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 1.7e-23 112.8 115 60.0
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 3.8e-23 111.7 114 57.9
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 3.8e-23 111.7 116 58.6
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 1.1e-22 110.2 122 55.7
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 1.4e-22 109.8 112 59.8
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 1.9e-22 109.4 116 57.8
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 3.2e-22 108.6 115 57.4
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 5.4e-22 107.8 118 55.1
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 7.1e-22 107.5 125 54.4
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.2e-21 106.7 109 59.6
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.2e-21 106.7 123 52.0
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 1.6e-21 106.3 105 58.1
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 2.1e-21 105.9 114 57.0
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 2.7e-21 105.5 115 55.7
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 3.5e-21 105.1 112 56.2
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 3.5e-21 105.1 113 55.8
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 3.5e-21 105.1 105 58.1
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 4.6e-21 104.8 113 56.6
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 6.0e-21 104.4 109 58.7
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 6.0e-21 104.4 115 56.5
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 6.0e-21 104.4 115 56.5
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 7.8e-21 104.0 114 57.0
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.0e-20 103.6 123 51.2
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 2.3e-20 102.4 112 51.8
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 2.3e-20 102.4 111 55.9
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 3.0e-20 102.1 113 53.1
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 3.9e-20 101.7 112 52.7
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 6.6e-20 100.9 112 53.6
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 6.6e-20 100.9 123 51.2
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 8.7e-20 100.5 111 51.4
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 1.1e-19 100.1 114 53.5
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 2.5e-19 99.0 112 50.9
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 4.3e-19 98.2 112 50.9
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 5.6e-19 97.8 113 54.0
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 9.6e-19 97.1 111 55.0
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 3.6e-18 95.1 115 52.2
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 3.6e-18 95.1 109 54.1
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 6.2e-18 94.4 111 50.5
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 1.4e-17 93.2 110 52.7
Eucgr.J00331 Eucalyptus grandis HOM05D006753 ORTHO05D008521 6.9e-17 90.9 162 38.9
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 2.0e-16 89.4 115 52.2
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 2.6e-16 89.0 109 49.5
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 4.5e-16 88.2 113 52.2
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 9.9e-16 87.0 113 51.3
Peaxi162Scf00003g02334 Petunia axillaris HOM05D006753 ORTHO05D008521 1.7e-15 86.3 109 49.5
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 2.2e-15 85.9 112 49.1
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 2.2e-15 85.9 113 49.6
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 2.2e-15 85.9 113 49.6
Mapoly0001s0293 Marchantia polymorpha HOM05D006753 ORTHO05D008521 8.4e-15 84.0 111 44.1
SMO166G0033 Selaginella moellendorffii HOM05D006753 ORTHO05D008521 8.4e-15 84.0 107 45.8
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 1.4e-14 83.2 69 65.2
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 1.4e-14 83.2 69 65.2
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 5.4e-14 81.3 113 50.4
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 5.4e-14 81.3 113 50.4
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 5.4e-14 81.3 113 50.4
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 7.1e-14 80.9 112 47.3
SMO115G0110 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 9.3e-14 80.5 105 44.8
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 1.8e-12 76.3 50 76.0
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 1.1e-11 73.6 50 70.0
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 2.5e-11 72.4 112 45.5
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 7.4e-11 70.9 53 66.0
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 9.6e-11 70.5 113 44.2
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 2.1e-10 69.3 98 50.0
Thhalv10015604m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 8.1e-10 67.4 88 53.4
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 8.1e-10 67.4 114 41.2
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 8.1e-10 67.4 114 41.2
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 1.4e-09 66.6 107 44.9
Nitab4.5_0002355g0040 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.4e-09 66.6 97 45.4
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 5.3e-09 64.7 118 40.7
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 1.4e-06 56.6 57 45.6
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 1.4e-06 56.6 57 43.9
Sabra04G0054400 Salix brachista HOM05D005384 ORTHO05D006477 2.4e-06 55.8 57 43.9
Lj4g0003244 Lotus japonicus HOM05D005384 ORTHO05D006477 3.2e-06 55.5 57 43.9
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 3.2e-06 55.5 57 45.6
Potri.017G138500 Populus trichocarpa HOM05D005384 ORTHO05D006477 3.2e-06 55.5 57 43.9
Actinidia22110 Actinidia chinensis HOM05D005384 ORTHO05D006477 4.2e-06 55.1 57 45.6
Haze_17401 Corylus avellana HOM05D006753 ORTHO05D008521 4.2e-06 55.1 49 61.2
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 4.2e-06 55.1 57 43.9
Medtr8g070990 Medicago truncatula HOM05D005384 ORTHO05D006477 4.2e-06 55.1 57 43.9
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 4.2e-06 55.1 57 43.9
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 5.5e-06 54.7 69 43.5
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 5.5e-06 54.7 69 43.5
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 5.5e-06 54.7 57 43.9
Oeu054547.2 Olea europaea HOM05D005384 ORTHO05D006477 5.5e-06 54.7 57 43.9
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 5.5e-06 54.7 57 43.9
arahy.Tifrunner.gnm1.ann1.EB4ABC Arachis hypogaea HOM05D005384 ORTHO05D006477 7.1e-06 54.3 57 42.1
arahy.Tifrunner.gnm1.ann1.R6E3N5 Arachis hypogaea HOM05D005384 ORTHO05D006477 7.1e-06 54.3 57 42.1
Cre02.g085200 Chlamydomonas reinhardtii HOM05D006753 ORTHO05D008521 7.1e-06 54.3 45 53.3
Peaxi162Scf00084g00818 Petunia axillaris HOM05D005384 ORTHO05D006477 9.3e-06 53.9 57 43.9
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 9.3e-06 53.9 57 43.9


User provided reference genes

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