Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0391400 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 6.4e-72 274.2 167 100.0
Zm00001eb048780 Zea mays HOM05D001047 ORTHO05D000768 8.8e-29 131.0 173 61.3
Zm00001eb223620 Zea mays HOM05D001047 ORTHO05D000768 3.7e-27 125.6 168 56.0
Zm00001eb048770 Zea mays HOM05D001047 ORTHO05D000768 8.5e-24 114.4 161 56.5
Zm00001eb006000 Zea mays HOM05D001047 ORTHO05D000768 4.5e-17 92.0 154 44.8
Os03g0181100 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 1.7e-16 90.1 192 40.6
Os10g0392400 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 1.2e-12 77.4 170 35.3
Solyc12g049400.2 Solanum lycopersicum HOM05D001047 ORTHO05D000768 5.3e-10 68.6 103 41.7
HanXRQChr15g0497141 Helianthus annuus HOM05D001047 ORTHO05D000768 7.0e-10 68.2 95 44.2
HanXRQChr12g0354451 Helianthus annuus HOM05D001047 ORTHO05D000768 9.1e-10 67.8 100 48.0
Os03g0180900 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 3.5e-09 65.9 165 34.5
Sopen12g023880 Solanum pennellii HOM05D001047 ORTHO05D000768 4.5e-09 65.5 103 40.8
PGSC0003DMG400004367 Solanum tuberosum HOM05D001047 ORTHO05D000768 4.5e-09 65.5 103 40.8
Zm00001eb132920 Zea mays HOM05D014806 ORTHO05D000768 4.5e-09 65.5 125 40.8
HanXRQChr10g0311841 Helianthus annuus HOM05D001047 ORTHO05D000768 5.9e-09 65.1 86 44.2
Solyc07g042170.3 Solanum lycopersicum HOM05D001047 ORTHO05D000768 7.7e-09 64.7 189 31.7
Peaxi162Scf00533g00059 Petunia axillaris HOM05D001047 ORTHO05D000768 1.0e-08 64.3 160 31.9
Nitab4.5_0000343g0360 Nicotiana tabacum HOM05D001047 ORTHO05D000768 1.3e-08 63.9 171 32.2
Os03g0180800 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D049874 1.7e-08 63.5 159 34.6
Sopen07g021770 Solanum pennellii HOM05D001047 ORTHO05D000768 1.7e-08 63.5 189 31.2
HPP92_011064 Vanilla planifolia HOM05D001047 ORTHO05D000768 1.7e-08 63.5 168 35.1
Sed0011504 Sechium edule HOM05D001047 ORTHO05D000768 2.2e-08 63.2 88 43.2
SGA_v2.0_scaffold296G47560 Striga asiatica HOM05D001047 ORTHO05D000768 2.2e-08 63.2 170 34.1
MELO3C022678.2 Cucumis melo HOM05D001047 ORTHO05D000768 2.9e-08 62.8 86 44.2
HPP92_026310 Vanilla planifolia HOM05D001047 ORTHO05D000768 2.9e-08 62.8 206 29.6
DCAR_028473 Daucus carota HOM05D001047 ORTHO05D000768 5.0e-08 62.0 177 31.6
Zm00001eb223590 Zea mays HOM05D001047 ORTHO05D000768 6.5e-08 61.6 98 42.9
TAR624G0161 Trochodendron aralioides HOM05D001047 ORTHO05D000768 8.5e-08 61.2 91 41.8
Zm00001eb005980 Zea mays HOM05D001047 ORTHO05D049874 8.5e-08 61.2 134 37.3
Dinv20411 Davidia involucrata HOM05D001047 ORTHO05D000768 1.1e-07 60.8 99 41.4
Os07g0615200 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 1.1e-07 60.8 205 33.2
Hma1.2p1_0090F.1_g046090 Hydrangea macrophylla HOM05D001047 ORTHO05D000768 1.5e-07 60.5 110 38.2
Psat2g175680 Pisum sativum HOM05D001047 ORTHO05D000768 1.5e-07 60.5 79 45.6
Hma1.2p1_0090F.1_g046100 Hydrangea macrophylla HOM05D001047 ORTHO05D000768 1.9e-07 60.1 110 40.9
Zm00001eb049490 Zea mays HOM05D014806 ORTHO05D000768 1.9e-07 60.1 113 38.1
Zm00001eb061650 Zea mays HOM05D014806 ORTHO05D000768 1.9e-07 60.1 118 41.5
AUR62001446 Chenopodium quinoa HOM05D001047 ORTHO05D000768 2.5e-07 59.7 102 39.2
HanXRQChr09g0277101 Helianthus annuus HOM05D001047 ORTHO05D000768 2.5e-07 59.7 104 38.5
Os10g0391801 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 2.5e-07 59.7 139 41.7
CAN.G1243.4 Capsicum annuum HOM05D001047 ORTHO05D000768 3.2e-07 59.3 92 40.2
arahy.Tifrunner.gnm1.ann1.76C240 Arachis hypogaea HOM05D001047 ORTHO05D000768 4.2e-07 58.9 93 43.0
Peaxi162Scf00928g00130 Petunia axillaris HOM05D001047 ORTHO05D000768 4.2e-07 58.9 111 39.6
SGA_v2.0_scaffold31G12677 Striga asiatica HOM05D001047 ORTHO05D000768 4.2e-07 58.9 112 42.0
Lalb_Chr12g0200271 Lupinus albus HOM05D001047 ORTHO05D000768 5.5e-07 58.5 100 40.0
Rhsim08G0241000 Rhododendron simsii HOM05D001047 ORTHO05D000768 5.5e-07 58.5 104 37.5
Glyma.04G013800 Glycine max HOM05D001047 ORTHO05D000768 7.2e-07 58.2 108 34.3
AUR62009919 Chenopodium quinoa HOM05D001047 ORTHO05D000768 9.4e-07 57.8 106 38.7
Glyma.01G204400 Glycine max HOM05D001047 ORTHO05D000768 9.4e-07 57.8 119 37.0
Gohir.A05G034800 Gossypium hirsutum HOM05D001047 ORTHO05D000768 9.4e-07 57.8 110 37.3
Gohir.D05G036200 Gossypium hirsutum HOM05D001047 ORTHO05D000768 9.4e-07 57.8 109 37.6
Gorai.009G036800 Gossypium raimondii HOM05D001047 ORTHO05D000768 9.4e-07 57.8 109 37.6
Lalb_Chr13g0299341 Lupinus albus HOM05D001047 ORTHO05D000768 9.4e-07 57.8 103 37.9
Zm00001eb342610 Zea mays HOM05D014806 ORTHO05D000768 9.4e-07 57.8 84 44.0
ATR0006G029 Amborella trichopoda HOM05D001047 ORTHO05D000768 1.2e-06 57.4 83 39.8
Os09g0439200 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 1.2e-06 57.4 133 35.3
Zm00001eb319450 Zea mays HOM05D014806 ORTHO05D000768 1.2e-06 57.4 118 36.4
A02p19630 Brassica napus HOM05D001047 ORTHO05D000768 1.6e-06 57.0 104 38.5
BraA02t06999Z Brassica rapa HOM05D001047 ORTHO05D000768 1.6e-06 57.0 104 38.5
Lsat_1_v5_gn_1_37841 Lactuca sativa HOM05D001047 ORTHO05D000768 1.6e-06 57.0 114 39.5
Lsat_1_v5_gn_5_139561 Lactuca sativa HOM05D001047 ORTHO05D000768 1.6e-06 57.0 158 34.2
Lalb_Chr23g0276321 Lupinus albus HOM05D001047 ORTHO05D000768 1.6e-06 57.0 100 39.0
MBI13_g00692_MAGBIO Magnolia biondii HOM05D001047 ORTHO05D000768 2.1e-06 56.6 117 38.5
SGA_v2.0_scaffold21G09523 Striga asiatica HOM05D001047 ORTHO05D000768 2.1e-06 56.6 109 40.4
EL10Ac7g16441 Beta vulgaris HOM05D001047 ORTHO05D000768 2.7e-06 56.2 113 38.9
CsaV3_3G030830 Cucumis sativus L. HOM05D001047 ORTHO05D000768 2.7e-06 56.2 168 33.9
Glyma.06G013700 Glycine max HOM05D001047 ORTHO05D000768 2.7e-06 56.2 108 33.3
Sc18g0002760 Simmondsia chinensis HOM05D001047 ORTHO05D000768 2.7e-06 56.2 101 35.6
HPP92_009416 Vanilla planifolia HOM05D001047 ORTHO05D000768 2.7e-06 56.2 100 39.0
GSVIVG01015042001 Vitis vinifera HOM05D001047 ORTHO05D000768 2.7e-06 56.2 113 37.2
Lsat_1_v5_gn_4_91521 Lactuca sativa HOM05D001047 ORTHO05D000768 3.6e-06 55.8 101 39.6
SEGI_02697 Sequoiadendron giganteum HOM05D001047 ORTHO05D000768 3.6e-06 55.8 95 43.2
TWI34G1575 Tripterygium wilfordii HOM05D001047 ORTHO05D000768 3.6e-06 55.8 98 40.8
unitig_578.g16404 Utricularia gibba HOM05D001047 ORTHO05D000768 3.6e-06 55.8 150 34.0
Zm00001eb005990 Zea mays HOM05D001047 ORTHO05D000768 3.6e-06 55.8 209 30.6
MSTRG.10497 Avicennia marina HOM05D001047 ORTHO05D000768 4.7e-06 55.5 117 36.8
Hma1.2p1_0229F.1_g096740 Hydrangea macrophylla HOM05D001047 ORTHO05D000768 4.7e-06 55.5 102 37.3
PSO386G0059 Papaver somniferum HOM05D001047 ORTHO05D000768 4.7e-06 55.5 103 36.9
Lj7A689T75 Lonicera japonica HOM05D001047 ORTHO05D000768 6.1e-06 55.1 92 44.6
MBI19_g05284_MAGBIO Magnolia biondii HOM05D001047 ORTHO05D000768 6.1e-06 55.1 109 37.6
Os03g0402800 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 6.1e-06 55.1 180 33.9
TPR.G31421 Trifolium pratense HOM05D001047 ORTHO05D000768 8.0e-06 54.7 94 40.4


User provided reference genes

Program Settings