Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0388600 Oryza sativa ssp. japonica HOM05D008270 ORTHO05D010684 0.0e+00 1323.9 708 100.0
Zm00001eb158440 Zea mays HOM05D008270 ORTHO05D010684 7.4e-69 266.2 628 29.6
Zm00001eb207180 Zea mays HOM05D008270 ORTHO05D010684 7.4e-69 266.2 628 29.6
Zm00001eb103270 Zea mays HOM05D008270 ORTHO05D010684 3.8e-65 253.8 589 30.2
Zm00001eb286500 Zea mays HOM05D008270 ORTHO05D010684 2.9e-57 227.6 504 29.8
Zm00001eb394900 Zea mays HOM05D008270 ORTHO05D010684 2.8e-52 211.1 465 30.5
Os02g0479700 Oryza sativa ssp. japonica HOM05D008270 ORTHO05D010684 2.0e-50 204.9 110 90.9
Zm00001eb272060 Zea mays HOM05D009386 ORTHO05D011419 5.2e-38 163.7 341 32.3
Zm00001eb442850 Zea mays HOM05D009386 ORTHO05D011419 5.2e-38 163.7 341 32.3
Zm00001eb059320 Zea mays HOM05D009386 ORTHO05D011419 1.2e-37 162.5 341 32.3
Zm00001eb162840 Zea mays HOM05D009386 ORTHO05D011419 9.8e-37 159.5 343 32.1
Zm00001eb096200 Zea mays HOM05D008270 ORTHO05D010684 1.7e-36 158.7 259 34.7
Zm00001eb427350 Zea mays HOM05D009386 ORTHO05D011419 5.0e-33 147.1 339 29.8
Zm00001eb324040 Zea mays HOM05D009386 ORTHO05D011419 5.5e-32 143.7 339 29.2
Zm00001eb186030 Zea mays HOM05D008270 ORTHO05D010684 5.2e-30 137.1 289 29.1
Zm00001eb372010 Zea mays HOM05D008270 ORTHO05D010684 1.7e-28 132.1 133 45.9
Zm00001eb049210 Zea mays HOM05D001870 ORTHO05D001797 6.3e-28 130.2 336 28.0
Zm00001eb318680 Zea mays HOM05D009386 ORTHO05D011419 8.3e-28 129.8 336 28.3
Zm00001eb084210 Zea mays HOM05D008270 ORTHO05D010684 1.4e-27 129.0 127 44.9
Zm00001eb321500 Zea mays HOM05D008270 ORTHO05D010684 5.4e-27 127.1 133 44.4
Zm00001eb361290 Zea mays HOM05D008270 ORTHO05D010684 5.4e-27 127.1 277 28.9
Zm00001eb352320 Zea mays HOM05D029194 ORTHO05D010684 1.2e-23 115.9 192 35.4
Zm00001eb203740 Zea mays HOM05D008270 ORTHO05D010684 4.7e-23 114.0 121 44.6
Zm00001eb178860 Zea mays HOM05D008270 ORTHO05D010684 1.2e-21 109.4 120 42.5
Zm00001eb185320 Zea mays HOM05D008270 ORTHO05D010684 5.8e-21 107.1 272 25.7
Zm00001eb021580 Zea mays HOM05D008270 ORTHO05D010684 2.2e-20 105.1 159 38.4
Zm00001eb341820 Zea mays HOM05D008270 ORTHO05D010684 9.2e-19 99.8 280 26.8
Zm00001eb308410 Zea mays HOM05D008270 ORTHO05D010684 2.7e-18 98.2 209 28.7
Zm00001eb225400 Zea mays HOM05D008270 ORTHO05D010684 1.0e-17 96.3 324 27.8
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 1.3e-17 95.9 341 26.7
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 6.6e-17 93.6 339 25.4
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 6.6e-17 93.6 339 25.4
Zm00001eb021110 Zea mays HOM05D009386 ORTHO05D011419 7.3e-16 90.1 212 32.5
Zm00001eb188020 Zea mays HOM05D009386 ORTHO05D011419 2.3e-14 85.1 140 35.0
Zm00001eb223790 Zea mays HOM05D008270 ORTHO05D010684 2.0e-13 82.0 132 31.8
PSO675G4138 Papaver somniferum HOM05D002639 ORTHO05D003094 1.4e-11 75.9 246 30.1
Nn3g19361 Nelumbo nucifera HOM05D002639 ORTHO05D003094 1.9e-11 75.5 206 29.6
Zm00001eb295280 Zea mays HOM05D008270 ORTHO05D010684 1.9e-11 75.5 70 41.4
Nn3g19359 Nelumbo nucifera HOM05D002639 ORTHO05D003094 3.2e-11 74.7 234 26.5
Zm00001eb344660 Zea mays HOM05D008270 ORTHO05D010684 4.1e-11 74.3 128 34.4
Zm00001eb282160 Zea mays HOM05D008270 ORTHO05D010684 5.4e-11 73.9 126 34.9
Zm00001eb241480 Zea mays HOM05D008270 ORTHO05D010684 1.6e-10 72.4 126 34.1
Zm00001eb007160 Zea mays HOM05D008270 ORTHO05D010684 3.5e-10 71.2 83 41.0
Zm00001eb387990 Zea mays HOM05D008270 ORTHO05D010684 3.5e-10 71.2 126 33.3
Nn3g19362 Nelumbo nucifera HOM05D002639 ORTHO05D008631 4.6e-10 70.9 225 26.7
Zm00001eb016900 Zea mays HOM05D009386 ORTHO05D011419 4.6e-10 70.9 206 27.7
CiPaw.02G082600 Carya illinoinensis HOM05D002639 ORTHO05D003094 1.7e-09 68.9 214 28.0
ATR0796G180 Amborella trichopoda HOM05D002639 ORTHO05D003094 3.0e-09 68.2 209 28.2
Glyma.17G027100 Glycine max HOM05D002639 ORTHO05D003094 3.9e-09 67.8 271 26.6
Gohir.A10G164400 Gossypium hirsutum HOM05D002639 ORTHO05D003094 3.9e-09 67.8 249 27.3
TAR636G2312 Trochodendron aralioides HOM05D002639 ORTHO05D003094 3.9e-09 67.8 207 26.1
Lj4g0016775 Lotus japonicus HOM05D002639 ORTHO05D003094 5.0e-09 67.4 209 30.1
GSVIVG01022680001 Vitis vinifera HOM05D010670 ORTHO05D013864 5.0e-09 67.4 240 22.9
Haze_01193 Corylus avellana HOM05D002639 ORTHO05D003094 6.6e-09 67.0 212 28.8
Gorai.002G028400 Gossypium raimondii HOM05D002639 ORTHO05D003094 6.6e-09 67.0 213 29.6
Sed0000099 Sechium edule HOM05D002639 ORTHO05D003094 6.6e-09 67.0 215 28.8
PGSC0003DMG400004634 Solanum tuberosum HOM05D002639 ORTHO05D003094 6.6e-09 67.0 210 30.5
Solyc12g099530.3 Solanum lycopersicum HOM05D002639 ORTHO05D003094 8.6e-09 66.6 210 30.0
Gohir.D10G170600 Gossypium hirsutum HOM05D002639 ORTHO05D003094 1.1e-08 66.2 215 27.9
Gorai.011G190600 Gossypium raimondii HOM05D002639 ORTHO05D003094 1.5e-08 65.9 215 27.9
Phvul.009G248500 Phaseolus vulgaris HOM05D002639 ORTHO05D003094 1.5e-08 65.9 212 27.8
SEGI_08688 Sequoiadendron giganteum HOM05D002639 ORTHO05D003094 1.5e-08 65.9 216 27.8
Sc13g0003440 Simmondsia chinensis HOM05D002639 ORTHO05D003094 1.5e-08 65.9 214 28.0
Ah.13g074620 Amaranthus hybridus HOM05D002639 ORTHO05D003094 1.9e-08 65.5 210 28.6
Glyma.09G044400 Glycine max HOM05D002639 ORTHO05D003094 1.9e-08 65.5 258 25.2
Sopen12g034210 Solanum pennellii HOM05D002639 ORTHO05D003094 1.9e-08 65.5 210 30.0
AL3G18030 Arabidopsis lyrata HOM05D002639 ORTHO05D003094 2.5e-08 65.1 276 28.3
BcaB04g21301 Brassica carinata HOM05D002639 ORTHO05D003094 2.5e-08 65.1 296 27.7
ClCG06G005110 Citrullus lanatus HOM05D002639 ORTHO05D003094 2.5e-08 65.1 210 28.6
Lalb_Chr20g0114601 Lupinus albus HOM05D002639 ORTHO05D003094 2.5e-08 65.1 213 29.1
CiPaw.01G147900 Carya illinoinensis HOM05D002639 ORTHO05D003094 3.3e-08 64.7 211 26.1
AL7G47080 Arabidopsis lyrata HOM05D002639 ORTHO05D003094 4.3e-08 64.3 212 27.8
Ca_21490_v3 Cicer arietinum L. HOM05D002639 ORTHO05D003094 4.3e-08 64.3 212 28.8
Gohir.D01G023484 Gossypium hirsutum HOM05D002639 ORTHO05D003094 4.3e-08 64.3 203 27.1
Lalb_Chr07g0177741 Lupinus albus HOM05D002639 ORTHO05D003094 4.3e-08 64.3 210 29.0
Sopen01g028430 Solanum pennellii HOM05D002639 ORTHO05D003094 4.3e-08 64.3 207 30.0
MSTRG.10098 Avicennia marina HOM05D002639 ORTHO05D003094 5.6e-08 63.9 210 30.0
BolC1t05578H Brassica oleracea HOM05D002639 ORTHO05D003094 5.6e-08 63.9 207 28.0
CSS0003276 Camellia sinensis var. sinensis HOM05D002639 ORTHO05D003094 5.6e-08 63.9 210 29.0
CAN.G129.28 Capsicum annuum HOM05D002639 ORTHO05D003094 5.6e-08 63.9 212 28.8
MELO3C021328.2 Cucumis melo HOM05D002639 ORTHO05D003094 5.6e-08 63.9 201 28.4
CANSAT78G0264 Cannabis sativa HOM05D002639 ORTHO05D003094 7.3e-08 63.5 206 26.2
Solyc01g066830.3 Solanum lycopersicum HOM05D002639 ORTHO05D003094 7.3e-08 63.5 209 28.7
CSS0011099 Camellia sinensis var. sinensis HOM05D002639 ORTHO05D003094 9.5e-08 63.2 211 27.0
Cpa.g.sc16.178 Carica papaya HOM05D002639 ORTHO05D003094 9.5e-08 63.2 180 28.9
Nitab4.5_0000570g0140 Nicotiana tabacum HOM05D002639 ORTHO05D003094 9.5e-08 63.2 204 28.9
Sed0005683 Sechium edule HOM05D002639 ORTHO05D003094 9.5e-08 63.2 206 27.7
VMungo1309G0779 Vigna mungo HOM05D002639 ORTHO05D003094 9.5e-08 63.2 212 27.4
BcaC05g29771 Brassica carinata HOM05D002639 ORTHO05D003094 1.2e-07 62.8 212 28.3
Thhalv10020659m.g Eutrema salsugineum HOM05D002639 ORTHO05D003094 1.2e-07 62.8 211 30.3
Medtr2g436660 Medicago truncatula HOM05D002639 ORTHO05D003094 1.2e-07 62.8 217 28.1
Medtr4g119970 Medicago truncatula HOM05D002639 ORTHO05D003094 1.2e-07 62.8 246 25.2
Rhsim04G0223300 Rhododendron simsii HOM05D002639 ORTHO05D003094 1.2e-07 62.8 213 30.0
Rhsim09G0006900 Rhododendron simsii HOM05D002639 ORTHO05D003094 1.2e-07 62.8 213 30.0
HPP92_013719 Vanilla planifolia HOM05D002639 ORTHO05D003094 1.2e-07 62.8 209 26.3
Aqoxy2G02966 Aquilegia oxysepala HOM05D002639 ORTHO05D003094 1.6e-07 62.4 211 26.1
BNapus_Darmor_BZH_scaffold_117p00160 Brassica napus HOM05D002639 ORTHO05D003094 1.6e-07 62.4 208 29.8
CAN.G484.35 Capsicum annuum HOM05D002639 ORTHO05D003094 1.6e-07 62.4 209 29.2
Dinv44376 Davidia involucrata HOM05D002639 ORTHO05D003094 1.6e-07 62.4 214 25.7
Glyma.15G148700 Glycine max HOM05D002639 ORTHO05D003094 1.6e-07 62.4 258 25.2
Carub.0003s0643 Capsella rubella HOM05D002639 ORTHO05D003094 2.1e-07 62.0 210 30.0
Lj6A677T76 Lonicera japonica HOM05D002639 ORTHO05D003094 2.1e-07 62.0 210 26.7
MBI15_g09755_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 2.1e-07 62.0 156 28.2
SEGI_27665 Sequoiadendron giganteum HOM05D002639 ORTHO05D003094 2.1e-07 62.0 208 25.0
Lj6g0011426 Lotus japonicus HOM05D002639 ORTHO05D003094 2.8e-07 61.6 217 25.3
Peaxi162Scf00646g00224 Petunia axillaris HOM05D002639 ORTHO05D003094 2.8e-07 61.6 204 28.4
vmacro08160 Vaccinium macrocarpon HOM05D002639 ORTHO05D003094 2.8e-07 61.6 212 30.2
Ah.04g153570 Amaranthus hybridus HOM05D002639 ORTHO05D003094 3.6e-07 61.2 211 26.1
CARHR081520 Cardamine hirsuta HOM05D002639 ORTHO05D003094 3.6e-07 61.2 277 28.2
HanXRQChr03g0081551 Helianthus annuus HOM05D002639 ORTHO05D003094 3.6e-07 61.2 200 25.5
Os10g0474000 Oryza sativa ssp. japonica HOM05D008270 ORTHO05D010684 3.6e-07 61.2 140 27.1
PSO832G1698 Papaver somniferum HOM05D002639 ORTHO05D003094 3.6e-07 61.2 212 26.9
QL06p009035 Quercus lobata HOM05D002639 ORTHO05D003094 3.6e-07 61.2 209 25.8
Aa31LG5G17480 Aethionema arabicum HOM05D002639 ORTHO05D003094 4.7e-07 60.8 213 27.7
BraA03t14040Z Brassica rapa HOM05D002639 ORTHO05D003094 4.7e-07 60.8 203 27.6
AUR62040372 Chenopodium quinoa HOM05D002639 ORTHO05D003094 4.7e-07 60.8 176 29.5
TPR.G3166 Trifolium pratense HOM05D002639 ORTHO05D003094 4.7e-07 60.8 217 26.3
Zm00001eb092200 Zea mays HOM05D005147 ORTHO05D006132 4.7e-07 60.8 257 24.5
Dinv29750 Davidia involucrata HOM05D002639 ORTHO05D003094 6.2e-07 60.5 211 26.5
VMungo1215G3056 Vigna mungo HOM05D002639 ORTHO05D003094 6.2e-07 60.5 216 26.9
Atru.chr4.2855 Acer truncatum HOM05D002639 ORTHO05D003094 8.1e-07 60.1 203 27.6
Prupe.1G135200 Prunus persica HOM05D002639 ORTHO05D003094 8.1e-07 60.1 204 27.9
TWI53G0486 Tripterygium wilfordii HOM05D002639 ORTHO05D003094 8.1e-07 60.1 328 23.5
Zm00001eb043210 Zea mays HOM05D008270 ORTHO05D010684 8.1e-07 60.1 77 42.9
Ca_01932_v3 Cicer arietinum L. HOM05D002639 ORTHO05D003094 1.4e-06 59.3 210 29.0
SMO115G0256 Selaginella moellendorffii HOM05D002639 ORTHO05D003094 1.4e-06 59.3 214 28.5
TAR365G0991 Trochodendron aralioides HOM05D002639 ORTHO05D003094 1.4e-06 59.3 211 24.6
CDE02G3750 Ceratophyllum demersum HOM05D002639 ORTHO05D003094 1.8e-06 58.9 209 24.4
Glyma.07G246900 Glycine max HOM05D002639 ORTHO05D003094 1.8e-06 58.9 234 26.5
PSO832G1526 Papaver somniferum HOM05D002639 ORTHO05D003094 1.8e-06 58.9 207 27.5
PSO210G3358 Papaver somniferum HOM05D002639 ORTHO05D003094 2.3e-06 58.5 198 27.3
Zm00001eb131540 Zea mays HOM05D002639 ORTHO05D003094 2.3e-06 58.5 206 24.3
Zm00001eb324120 Zea mays HOM05D000238 ORTHO05D011419 2.3e-06 58.5 161 30.4
Carub.0007s3326 Capsella rubella HOM05D002639 ORTHO05D003094 3.1e-06 58.2 211 24.6
COL.COLO4_13861 Corchorus olitorius HOM05D002639 ORTHO05D003094 3.1e-06 58.2 211 26.5
SEGI_37885 Sequoiadendron giganteum HOM05D002639 ORTHO05D003094 3.1e-06 58.2 227 25.1
GSVIVG01017729001 Vitis vinifera HOM05D002639 ORTHO05D003094 3.1e-06 58.2 200 26.0
Phvul.003G106100 Phaseolus vulgaris HOM05D002639 ORTHO05D003094 4.0e-06 57.8 338 22.2
THA.LOC104827344 Tarenaya hassleriana HOM05D002639 ORTHO05D003094 4.0e-06 57.8 213 27.7
MBI18_g06865_MAGBIO Magnolia biondii HOM05D002639 ORTHO05D003094 5.2e-06 57.4 177 30.5
SGA_v2.0_scaffold67G22629 Striga asiatica HOM05D002639 ORTHO05D003094 5.2e-06 57.4 201 27.9
FAN07G0222 Fragaria x ananassa HOM05D002639 ORTHO05D003094 6.8e-06 57.0 201 25.9
FAN12G2797 Fragaria x ananassa HOM05D002639 ORTHO05D003094 6.8e-06 57.0 201 26.4
FAN12G3880 Fragaria x ananassa HOM05D002639 ORTHO05D003094 6.8e-06 57.0 201 26.4
FAN17G1452 Fragaria x ananassa HOM05D002639 ORTHO05D003094 8.9e-06 56.6 201 25.9
MBI18_g29663_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 8.9e-06 56.6 129 25.6
Zm00001eb242860 Zea mays HOM05D009386 ORTHO05D011419 8.9e-06 56.6 161 29.2


User provided reference genes

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