Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 0.0e+00 1250.0 647 100.0
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 6.2e-272 940.6 647 75.6
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 1.5e-145 520.8 654 45.7
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 3.6e-131 473.0 659 41.9
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 3.4e-121 439.9 662 40.8
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 4.2e-119 433.0 661 40.1
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 5.5e-119 432.6 659 40.8
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 1.1e-116 424.9 661 40.1
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 1.6e-115 421.0 658 38.3
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 3.4e-113 413.3 652 39.4
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 5.8e-113 412.5 661 40.7
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 5.8e-113 412.5 652 39.4
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 2.9e-112 410.2 652 39.1
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 2.9e-112 410.2 652 39.1
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 2.9e-112 410.2 658 39.2
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 4.9e-112 409.5 660 38.9
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 9.3e-111 405.2 652 38.5
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 1.6e-110 404.4 642 37.9
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 1.6e-110 404.4 652 38.8
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 2.7e-110 403.7 665 38.2
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 1.8e-109 401.0 653 37.7
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 3.9e-109 399.8 664 38.3
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 8.7e-109 398.7 660 38.0
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 1.5e-108 397.9 648 38.4
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 1.9e-108 397.5 661 38.6
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 1.9e-108 397.5 659 37.8
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 1.9e-108 397.5 657 39.6
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 7.4e-108 395.6 660 38.9
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 1.6e-107 394.4 665 37.1
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 2.2e-107 394.0 664 37.0
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 8.2e-107 392.1 665 37.0
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 8.2e-107 392.1 648 38.3
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 1.1e-106 391.7 658 36.2
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.4e-106 391.3 665 37.0
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 9.0e-106 388.7 652 37.6
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 9.0e-106 388.7 628 38.5
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 1.2e-105 388.3 660 37.6
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 3.4e-105 386.7 650 36.8
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 5.9e-105 386.0 658 37.4
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 1.0e-104 385.2 651 36.3
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 1.6e-102 377.9 661 36.9
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 3.6e-102 376.7 661 36.5
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 7.9e-102 375.6 659 37.2
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 2.3e-101 374.0 664 36.4
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 3.1e-98 363.6 656 37.7
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 6.9e-98 362.5 666 34.8
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 6.9e-98 362.5 656 35.1
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 3.4e-97 360.1 658 35.7
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 4.5e-97 359.8 653 36.3
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 5.9e-97 359.4 659 35.8
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 1.0e-96 358.6 664 37.7
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 1.0e-96 358.6 651 35.0
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 2.2e-96 357.5 657 35.6
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 3.8e-96 356.7 648 36.4
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 6.5e-96 355.9 655 35.1
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 3.2e-95 353.6 668 36.7
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 2.1e-94 350.9 662 36.7
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 2.7e-94 350.5 659 36.9
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 3.6e-94 350.1 604 37.9
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 4.7e-94 349.7 660 35.3
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 4.7e-94 349.7 664 35.8
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 6.7e-93 345.9 646 35.8
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 8.8e-93 345.5 654 35.8
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 1.5e-92 344.7 646 35.1
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 1.5e-92 344.7 651 35.6
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 2.0e-92 344.4 661 36.3
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 3.3e-92 343.6 663 35.3
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 4.4e-92 343.2 609 36.9
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 5.7e-92 342.8 656 34.6
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 1.3e-91 341.7 663 34.7
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 1.7e-91 341.3 658 35.0
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 3.7e-91 340.1 658 34.7
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 8.2e-91 339.0 650 35.7
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 8.2e-91 339.0 650 35.7
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 1.1e-90 338.6 650 35.5
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 1.4e-90 338.2 658 34.8
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 4.1e-90 336.7 651 34.7
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 7.0e-90 335.9 650 35.4
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 1.2e-89 335.1 648 34.4
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 1.5e-89 334.7 654 34.6
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 1.3e-88 331.6 609 36.1
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 3.8e-88 330.1 649 34.7
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 1.1e-87 328.6 659 35.7
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 1.6e-86 324.7 573 36.6
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 3.6e-86 323.6 635 35.3
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 5.2e-85 319.7 655 35.1
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 2.0e-81 307.8 640 33.4
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 2.1e-78 297.7 644 34.9
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 6.8e-77 292.7 610 33.6
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 7.5e-76 289.3 506 36.2
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 8.3e-75 285.8 560 33.4
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 7.2e-71 272.7 678 30.5
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 8.0e-70 269.2 659 30.7
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 4.0e-69 266.9 690 28.0
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.8e-66 258.1 387 40.6
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 7.0e-66 256.1 348 43.1
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 9.1e-66 255.8 418 37.3
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 2.5e-63 247.7 617 32.6
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 2.1e-62 244.6 667 28.3
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 5.2e-61 240.0 319 42.0
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 1.2e-57 228.8 402 35.1
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 5.6e-55 219.9 445 33.3
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 3.4e-52 210.7 472 28.8
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 8.6e-40 169.5 550 25.6
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 4.4e-20 104.0 163 38.0
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.3e-16 92.4 137 40.1
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 4.9e-11 73.9 68 57.4
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 2.7e-09 68.2 121 38.8
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 3.3e-07 61.2 67 41.8


User provided reference genes

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