Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 9.3e-221 770.0 415 100.0
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 4.4e-138 495.4 417 70.7
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 3.4e-82 309.7 425 49.4
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 3.4e-82 309.7 441 51.0
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 7.6e-82 308.5 423 49.9
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 4.9e-81 305.8 422 51.2
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 8.4e-81 305.1 449 48.6
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 4.2e-80 302.8 427 50.4
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 4.2e-80 302.8 419 51.6
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 9.3e-80 301.6 425 49.9
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 1.2e-79 301.2 430 50.2
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 2.1e-79 300.4 414 48.6
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 2.7e-79 300.1 351 52.7
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 1.3e-78 297.7 406 49.3
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 3.0e-78 296.6 418 48.3
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.1e-77 294.7 424 48.1
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 1.5e-77 294.3 423 51.1
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 5.7e-77 292.4 431 49.4
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 7.4e-77 292.0 431 49.4
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 1.3e-76 291.2 420 50.7
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 2.1e-76 290.4 429 49.4
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 4.8e-76 289.3 422 48.3
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 8.2e-76 288.5 423 48.7
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 1.4e-75 287.7 421 48.2
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 2.4e-75 287.0 422 48.1
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 2.4e-75 287.0 433 50.1
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 3.1e-75 286.6 422 48.1
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 4.1e-75 286.2 430 48.4
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 4.1e-75 286.2 432 48.4
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 5.3e-75 285.8 422 47.9
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 6.9e-75 285.4 421 48.7
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 6.9e-75 285.4 423 49.4
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 9.0e-75 285.0 414 50.0
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.2e-74 284.6 426 48.4
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 1.2e-74 284.6 430 47.0
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 1.5e-74 284.3 412 49.8
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 1.5e-74 284.3 423 47.0
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 2.0e-74 283.9 435 49.2
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 4.5e-74 282.7 420 47.6
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 5.9e-74 282.3 429 51.5
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 7.6e-74 282.0 427 47.1
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 7.6e-74 282.0 419 47.3
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.3e-73 281.2 407 48.6
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 1.3e-73 281.2 421 47.5
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 2.2e-73 280.4 423 47.8
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 2.2e-73 280.4 420 49.5
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 2.9e-73 280.0 358 50.8
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 3.8e-73 279.6 423 45.9
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 5.0e-73 279.3 417 48.2
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 5.0e-73 279.3 430 48.1
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 6.5e-73 278.9 428 48.8
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 6.5e-73 278.9 427 47.1
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 6.5e-73 278.9 423 45.9
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 6.5e-73 278.9 421 48.7
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.1e-72 278.1 422 48.3
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 1.1e-72 278.1 429 45.5
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 1.1e-72 278.1 417 47.5
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 1.4e-72 277.7 424 48.8
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 1.4e-72 277.7 446 45.1
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.4e-72 277.7 417 48.2
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 2.5e-72 276.9 349 51.9
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 4.2e-72 276.2 427 49.9
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 4.2e-72 276.2 358 50.8
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 4.2e-72 276.2 358 50.8
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 4.2e-72 276.2 434 49.5
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 4.2e-72 276.2 422 47.2
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 5.5e-72 275.8 366 51.9
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 7.2e-72 275.4 423 48.7
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 9.3e-72 275.0 371 50.9
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 9.3e-72 275.0 371 50.9
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 9.3e-72 275.0 415 46.7
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 9.3e-72 275.0 423 46.8
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 1.2e-71 274.6 426 47.7
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 1.2e-71 274.6 377 49.9
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 2.1e-71 273.9 421 46.8
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 3.6e-71 273.1 420 48.6
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 3.6e-71 273.1 415 49.2
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 3.6e-71 273.1 421 47.7
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 3.6e-71 273.1 422 48.1
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 3.6e-71 273.1 421 49.6
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 4.6e-71 272.7 420 47.4
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 6.1e-71 272.3 423 45.4
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 6.1e-71 272.3 419 46.5
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 7.9e-71 271.9 356 50.8
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.0e-70 271.6 424 46.2
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 1.3e-70 271.2 344 50.0
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 1.3e-70 271.2 423 48.5
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 2.3e-70 270.4 417 47.0
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.0e-70 270.0 418 47.8
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 5.1e-70 269.2 425 48.7
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 6.7e-70 268.9 418 47.8
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 6.7e-70 268.9 362 49.7
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 1.1e-69 268.1 422 46.4
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 1.5e-69 267.7 361 50.1
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 1.5e-69 267.7 421 49.9
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.9e-69 267.3 418 47.6
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 4.3e-69 266.2 419 47.7
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 5.7e-69 265.8 417 47.5
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 1.6e-68 264.2 425 47.3
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 2.8e-68 263.5 423 47.3
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.7e-68 263.1 418 47.4
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.2e-68 261.9 366 48.6
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 1.8e-67 260.8 424 46.2
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 2.4e-67 260.4 346 51.2
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 3.1e-67 260.0 415 47.5
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 3.1e-67 260.0 425 48.2
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 3.1e-67 260.0 429 46.6
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 6.9e-67 258.8 341 49.6
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 4.5e-66 256.1 424 45.0
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 1.0e-65 255.0 419 47.3
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.0e-65 255.0 413 46.2
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.4e-64 251.1 440 44.1
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 3.2e-64 250.0 349 47.6
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 4.2e-64 249.6 359 45.4
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 9.4e-64 248.4 406 48.0
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 3.6e-63 246.5 444 44.1
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 3.6e-63 246.5 368 47.0
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 4.6e-63 246.1 371 45.0
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 6.1e-63 245.7 331 48.0
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 3.9e-62 243.0 383 46.7
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 5.1e-62 242.7 421 44.4
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 2.0e-61 240.7 372 44.6
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 1.3e-60 238.0 345 47.5
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 2.6e-58 230.3 419 43.0
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 1.0e-57 228.4 429 40.3
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 1.4e-56 224.6 345 45.2
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 4.7e-55 219.5 351 43.6
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 4.1e-51 206.5 439 37.6
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 3.2e-48 196.8 422 38.9
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.6e-42 177.9 413 39.2
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 2.0e-42 177.6 216 52.8
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.3e-41 174.9 328 41.8
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 6.1e-39 166.0 254 44.5
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 5.7e-37 159.5 230 50.4
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 7.5e-37 159.1 359 35.9
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 7.7e-34 149.1 361 34.3
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 1.0e-33 148.7 396 33.1
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 3.6e-31 140.2 212 46.7
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 1.0e-30 138.7 249 43.4
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.8e-28 130.6 185 45.9
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 9.2e-27 125.6 406 32.3
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 2.7e-26 124.0 236 43.2
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 7.8e-26 122.5 270 36.7
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 7.8e-26 122.5 270 36.7
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 6.4e-20 102.8 107 52.3
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 7.0e-19 99.4 108 50.0
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 8.6e-17 92.4 180 40.0
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 7.3e-16 89.4 265 29.1
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 6.8e-14 82.8 346 30.1
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 2.9e-12 77.4 198 34.8
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.1e-08 65.5 281 28.1
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 4.7e-07 60.1 162 37.0
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 1.8e-06 58.2 192 31.2


User provided reference genes

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