Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 4.6e-244 847.4 417 100.0
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.0e-194 682.6 382 87.4
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 2.5e-189 665.6 413 78.7
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 5.4e-160 568.2 397 70.3
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 5.7e-154 548.1 417 65.9
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 4.7e-148 528.5 421 63.4
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 8.3e-137 491.1 415 61.9
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 3.9e-126 455.7 403 57.1
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 1.2e-124 450.7 407 56.5
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 1.6e-124 450.3 407 56.5
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 1.6e-124 450.3 407 56.5
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 1.6e-124 450.3 407 56.5
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 2.1e-124 449.9 407 56.5
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 4.7e-124 448.7 410 55.4
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 6.2e-124 448.4 405 56.3
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 8.1e-124 448.0 408 56.6
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 2.4e-123 446.4 407 56.8
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 2.4e-123 446.4 407 55.8
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 3.1e-123 446.0 409 55.0
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 3.1e-123 446.0 409 56.5
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 8.9e-123 444.5 402 55.5
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 1.5e-122 443.7 409 55.7
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 1.5e-122 443.7 405 55.3
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 3.4e-122 442.6 400 55.0
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 5.8e-122 441.8 407 54.8
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 2.2e-121 439.9 407 55.3
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 2.9e-121 439.5 405 53.3
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 2.9e-121 439.5 403 55.6
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 3.8e-121 439.1 403 55.3
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 3.8e-121 439.1 404 55.9
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 4.9e-121 438.7 405 55.3
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 4.9e-121 438.7 402 56.5
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 6.4e-121 438.3 407 54.5
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 6.4e-121 438.3 403 55.1
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 6.4e-121 438.3 404 53.7
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 8.4e-121 438.0 403 54.3
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 1.1e-120 437.6 403 55.6
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.9e-120 436.8 403 55.8
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 1.9e-120 436.8 412 54.1
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 2.4e-120 436.4 406 56.2
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 4.2e-120 435.6 406 54.7
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 7.1e-120 434.9 402 55.5
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 9.3e-120 434.5 406 54.9
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 9.3e-120 434.5 403 54.6
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 1.6e-119 433.7 408 54.4
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 2.7e-119 433.0 402 53.2
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 4.6e-119 432.2 406 54.7
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 4.6e-119 432.2 405 54.6
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 6.0e-119 431.8 410 53.2
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 7.8e-119 431.4 406 54.2
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 7.8e-119 431.4 409 52.8
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 7.8e-119 431.4 405 53.6
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.0e-118 431.0 405 53.6
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 1.7e-118 430.3 402 53.5
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.7e-118 430.3 408 52.9
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 1.7e-118 430.3 403 53.8
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 2.3e-118 429.9 403 53.6
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.9e-118 429.1 402 54.0
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 6.6e-118 428.3 409 53.3
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 8.7e-118 427.9 402 54.0
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 1.9e-117 426.8 400 53.2
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 3.3e-117 426.0 402 53.5
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 4.3e-117 425.6 403 53.6
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 9.6e-117 424.5 408 53.2
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.3e-116 424.1 406 53.4
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 1.3e-116 424.1 405 53.8
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.1e-116 423.3 410 53.2
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 2.8e-116 422.9 400 53.5
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 2.8e-116 422.9 402 53.5
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 2.8e-116 422.9 402 54.0
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 2.8e-116 422.9 402 54.0
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 4.8e-116 422.2 403 54.8
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 6.2e-116 421.8 406 53.4
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 8.1e-116 421.4 419 52.3
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 8.1e-116 421.4 401 53.1
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 1.4e-115 420.6 394 53.0
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 1.4e-115 420.6 388 53.1
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.4e-115 420.6 399 52.4
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 1.8e-115 420.2 394 53.8
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 2.4e-115 419.9 402 56.5
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 4.0e-115 419.1 400 53.8
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 4.0e-115 419.1 401 53.6
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 5.3e-115 418.7 399 52.1
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 6.9e-115 418.3 400 53.2
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 9.0e-115 417.9 401 52.6
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.2e-114 417.5 402 53.2
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 1.2e-114 417.5 412 51.9
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 1.5e-114 417.2 392 51.5
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 1.5e-114 417.2 400 52.0
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 2.0e-114 416.8 401 51.4
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 5.8e-114 415.2 407 51.8
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 7.6e-114 414.8 416 50.7
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 7.6e-114 414.8 399 52.9
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 9.9e-114 414.5 391 53.5
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.3e-113 414.1 392 53.1
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.3e-113 414.1 392 53.1
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 1.3e-113 414.1 408 50.7
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 1.3e-113 414.1 400 52.2
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 8.4e-113 411.4 409 51.1
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 1.4e-112 410.6 406 52.5
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 3.2e-112 409.5 400 53.5
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 4.2e-112 409.1 405 50.6
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 4.2e-112 409.1 392 51.8
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 5.4e-112 408.7 401 51.6
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 9.3e-112 407.9 398 51.5
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 3.5e-111 406.0 393 52.2
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 6.0e-111 405.2 397 50.9
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 7.9e-111 404.8 405 50.1
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 1.3e-110 404.1 391 50.6
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 3.0e-110 402.9 405 53.1
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 3.9e-110 402.5 392 53.1
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 8.7e-110 401.4 396 50.3
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.3e-109 399.4 393 51.9
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.1e-108 396.7 381 52.0
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.1e-108 396.7 381 52.0
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.1e-108 396.7 397 51.4
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 4.8e-108 395.6 402 51.7
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 6.2e-108 395.2 399 50.4
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 1.4e-107 394.0 392 50.3
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 1.8e-107 393.7 407 49.1
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 3.1e-107 392.9 399 51.1
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.0e-106 390.2 397 50.6
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 3.2e-104 382.9 393 51.1
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 2.1e-103 380.2 402 50.2
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.3e-100 370.9 418 48.6
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 1.6e-100 370.5 407 50.9
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 2.0e-98 363.6 423 47.3
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 6.5e-97 358.6 417 48.4
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 9.3e-96 354.8 405 46.9
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 7.4e-93 345.1 396 46.5
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 4.6e-87 325.9 418 43.8
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 3.0e-86 323.2 387 46.0
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 3.8e-81 306.2 407 44.0
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 2.5e-80 303.5 386 44.6
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 1.4e-59 234.6 250 49.6
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.5e-56 224.6 407 37.6
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 5.5e-56 222.6 449 35.9
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 3.0e-54 216.9 194 53.6
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 2.6e-53 213.8 404 35.9
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 2.4e-51 207.2 403 35.2
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 4.1e-51 206.5 399 35.6
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.0e-50 204.1 290 40.7
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 2.0e-50 204.1 401 34.4
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.3e-49 200.7 235 46.0
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 6.5e-49 199.1 165 55.8
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 8.9e-38 162.2 157 49.7
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.1e-31 141.0 374 31.0
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 2.2e-28 131.0 124 53.2
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 3.5e-26 123.6 94 64.9
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 8.3e-20 102.4 78 62.8
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 1.1e-19 102.1 404 27.7
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.6e-15 87.0 179 35.2
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 1.9e-08 64.7 52 55.8
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 2.5e-08 64.3 40 67.5
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 6.2e-07 59.7 399 25.6
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 1.8e-06 58.2 411 22.9
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 9.0e-06 55.8 405 22.0


User provided reference genes

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