Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0468150 Oryza sativa ssp. japonica HOM05D002888 ORTHO05D003321 1.5e-168 596.3 334 100.0
Zm00001eb315580 Zea mays HOM05D002888 ORTHO05D003321 9.4e-115 417.5 336 73.2
MBI06_g18771_MAGBIO Magnolia biondii HOM05D002888 ORTHO05D003321 2.4e-25 120.6 319 35.1
Nn5g29964 Nelumbo nucifera HOM05D002888 ORTHO05D003321 7.1e-22 109.0 354 31.6
Hma1.2p1_0045F.1_g026590 Hydrangea macrophylla HOM05D002888 ORTHO05D003321 1.3e-20 104.8 260 34.6
Aqoxy6G00686 Aquilegia oxysepala HOM05D002888 ORTHO05D003321 3.0e-20 103.6 258 33.7
TAR628G0527 Trochodendron aralioides HOM05D002888 ORTHO05D003321 5.1e-20 102.8 349 31.2
Dinv20800 Davidia involucrata HOM05D002888 ORTHO05D003321 8.7e-20 102.1 338 33.1
Sc03g0000200 Simmondsia chinensis HOM05D002888 ORTHO05D003321 1.9e-19 100.9 334 32.3
Sc03g0000230 Simmondsia chinensis HOM05D002888 ORTHO05D003321 1.9e-19 100.9 334 32.3
GSVIVG01007072001 Vitis vinifera HOM05D002888 ORTHO05D003321 3.3e-19 100.1 349 30.7
Lj2P538T22 Lonicera japonica HOM05D002888 ORTHO05D003321 4.3e-19 99.8 257 33.5
Glyma.05G175100 Glycine max HOM05D002888 ORTHO05D003321 7.4e-19 99.0 233 34.8
Glyma.08G132400 Glycine max HOM05D002888 ORTHO05D003321 9.6e-19 98.6 289 32.9
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 2.1e-18 97.4 364 31.3
Lj4g0004924 Lotus japonicus HOM05D002888 ORTHO05D003321 3.7e-18 96.7 294 31.3
Manes.12G129001 Manihot esculenta HOM05D002888 ORTHO05D003321 6.3e-18 95.9 324 30.6
Peaxi162Scf00237g00041 Petunia axillaris HOM05D002888 ORTHO05D003321 6.3e-18 95.9 254 33.1
Sopen11g005150 Solanum pennellii HOM05D002888 ORTHO05D003321 6.3e-18 95.9 252 33.3
Solyc11g010370.1 Solanum lycopersicum HOM05D002888 ORTHO05D003321 8.2e-18 95.5 252 33.3
Duzib147G0504 Durio zibethinus HOM05D002888 ORTHO05D003321 1.1e-17 95.1 348 31.9
Duzib187G0880 Durio zibethinus HOM05D002888 ORTHO05D003321 1.1e-17 95.1 242 34.3
Lalb_Chr07g0185361 Lupinus albus HOM05D002888 ORTHO05D003321 1.1e-17 95.1 263 30.8
Cfa004368 Carpinus fangiana HOM05D002888 ORTHO05D003321 1.8e-17 94.4 268 32.1
CANSAT01G2511 Cannabis sativa HOM05D002888 ORTHO05D003321 3.1e-17 93.6 342 30.1
Cpa.g.sc55.58 Carica papaya HOM05D002888 ORTHO05D003321 3.1e-17 93.6 350 31.4
Duzib264G0538 Durio zibethinus HOM05D002888 ORTHO05D003321 4.1e-17 93.2 348 30.7
FAN26G0322 Fragaria x ananassa HOM05D002888 ORTHO05D003321 5.3e-17 92.8 354 29.9
DCAR_003463 Daucus carota HOM05D002888 ORTHO05D003321 1.2e-16 91.7 337 29.4
Thhalv10025543m.g Eutrema salsugineum HOM05D002888 ORTHO05D003321 1.2e-16 91.7 349 29.8
Oeu031107.1 Olea europaea HOM05D002888 ORTHO05D003321 1.5e-16 91.3 238 33.2
CiPaw.02G022400 Carya illinoinensis HOM05D002888 ORTHO05D003321 2.0e-16 90.9 267 31.5
DCAR_019303 Daucus carota HOM05D002888 ORTHO05D003321 2.0e-16 90.9 333 30.0
FvH4_1g20100 Fragaria vesca HOM05D002888 ORTHO05D003321 2.0e-16 90.9 344 29.7
THA.LOC104824904 Tarenaya hassleriana HOM05D002888 ORTHO05D003321 2.0e-16 90.9 266 32.0
FAN19G2862 Fragaria x ananassa HOM05D002888 ORTHO05D003321 2.6e-16 90.5 354 29.7
Actinidia06530 Actinidia chinensis HOM05D002888 ORTHO05D003321 3.4e-16 90.1 303 32.7
BolC3t20115H Brassica oleracea HOM05D002888 ORTHO05D003321 3.4e-16 90.1 354 30.2
Oeu002153.1 Olea europaea HOM05D002888 ORTHO05D003321 3.4e-16 90.1 238 33.6
Gohir.D10G100800 Gossypium hirsutum HOM05D002888 ORTHO05D003321 4.5e-16 89.7 349 30.4
Gorai.011G110500 Gossypium raimondii HOM05D002888 ORTHO05D003321 4.5e-16 89.7 349 30.4
MD15G1316600 Malus domestica HOM05D002888 ORTHO05D003321 4.5e-16 89.7 350 30.3
FAN28G2738 Fragaria x ananassa HOM05D002888 ORTHO05D003321 5.9e-16 89.4 354 29.4
FAN23G2029 Fragaria x ananassa HOM05D002888 ORTHO05D003321 7.6e-16 89.0 353 28.9
Gohir.A10G087400 Gossypium hirsutum HOM05D002888 ORTHO05D003321 7.6e-16 89.0 349 30.1
Atru.chr3.1322 Acer truncatum HOM05D002888 ORTHO05D003321 1.0e-15 88.6 327 30.9
A08p23140 Brassica napus HOM05D002888 ORTHO05D003321 1.3e-15 88.2 356 30.1
C03p78700 Brassica napus HOM05D002888 ORTHO05D003321 1.3e-15 88.2 354 29.1
Thecc.01G093800 Theobroma cacao HOM05D002888 ORTHO05D003321 1.3e-15 88.2 345 30.1
Cc07_g14430 Coffea canephora HOM05D002888 ORTHO05D003321 1.7e-15 87.8 256 30.5
Haze_15043 Corylus avellana HOM05D002888 ORTHO05D003321 1.7e-15 87.8 269 30.9
VMungo0251G2032 Vigna mungo HOM05D002888 ORTHO05D003321 1.7e-15 87.8 236 31.4
MSTRG.2589 Avicennia marina HOM05D002888 ORTHO05D003321 2.2e-15 87.4 324 31.2
BcaC01g00342 Brassica carinata HOM05D002888 ORTHO05D003321 2.2e-15 87.4 354 29.1
CSS0026892 Camellia sinensis var. sinensis HOM05D002888 ORTHO05D003321 2.2e-15 87.4 336 30.4
RcHm_v2.0_Chr2g0112101 Rosa chinensis HOM05D002888 ORTHO05D003321 2.2e-15 87.4 270 32.2
PGSC0003DMG400016215 Solanum tuberosum HOM05D002888 ORTHO05D003321 2.2e-15 87.4 251 32.7
PGR102G0243 Punica granatum HOM05D002888 ORTHO05D003321 2.9e-15 87.0 319 33.5
Psat5g090920 Pisum sativum HOM05D002888 ORTHO05D003321 5.0e-15 86.3 238 32.8
Dinv44817 Davidia involucrata HOM05D002888 ORTHO05D003321 8.5e-15 85.5 249 30.5
Gohir.A06G032800 Gossypium hirsutum HOM05D002888 ORTHO05D003321 1.1e-14 85.1 264 29.2
TWI56G0301 Tripterygium wilfordii HOM05D002888 ORTHO05D003321 1.1e-14 85.1 326 29.4
Gohir.D06G033700 Gossypium hirsutum HOM05D002888 ORTHO05D003321 1.4e-14 84.7 243 30.0
Gorai.010G037200 Gossypium raimondii HOM05D002888 ORTHO05D003321 1.4e-14 84.7 243 30.0
BcaNung00942 Brassica carinata HOM05D002888 ORTHO05D003321 1.9e-14 84.3 346 30.6
CiPaw.01G048400 Carya illinoinensis HOM05D002888 ORTHO05D003321 1.9e-14 84.3 254 31.1
Prupe.6G195400 Prunus persica HOM05D002888 ORTHO05D003321 1.9e-14 84.3 248 32.7
Cfa017907 Carpinus fangiana HOM05D002888 ORTHO05D003321 2.5e-14 84.0 240 31.2
QL06p047786 Quercus lobata HOM05D002888 ORTHO05D003321 3.2e-14 83.6 269 29.7
BraA08t34272Z Brassica rapa HOM05D002888 ORTHO05D003321 4.2e-14 83.2 356 29.8
Sp7g35770 Schrenkiella parvula HOM05D002888 ORTHO05D003321 4.2e-14 83.2 350 30.3
Eucgr.B00050 Eucalyptus grandis HOM05D002888 ORTHO05D003321 5.5e-14 82.8 263 31.6
Thecc.08G064800 Theobroma cacao HOM05D002888 ORTHO05D003321 5.5e-14 82.8 262 31.3
Ciclev10025941m.g Citrus clementina HOM05D002888 ORTHO05D003321 7.2e-14 82.4 339 30.1
TWI53G0860 Tripterygium wilfordii HOM05D002888 ORTHO05D003321 7.2e-14 82.4 321 29.3
vmacro22669 Vaccinium macrocarpon HOM05D002888 ORTHO05D003321 7.2e-14 82.4 273 33.3
C01p01130 Brassica napus HOM05D002888 ORTHO05D003321 9.3e-14 82.0 350 30.3
BolC1t00111H Brassica oleracea HOM05D002888 ORTHO05D003321 9.3e-14 82.0 350 30.3
Carub.0007s0207 Capsella rubella HOM05D002888 ORTHO05D003321 9.3e-14 82.0 335 30.1
COL.COLO4_11980 Corchorus olitorius HOM05D002888 ORTHO05D003321 1.2e-13 81.6 265 28.7
A01p01010 Brassica napus HOM05D002888 ORTHO05D003321 1.6e-13 81.3 347 30.3
BraA01t00099Z Brassica rapa HOM05D002888 ORTHO05D003321 1.6e-13 81.3 347 30.3
COL.COLO4_27312 Corchorus olitorius HOM05D002888 ORTHO05D003321 1.6e-13 81.3 337 28.5
RcHm_v2.0_Chr7g0238041 Rosa chinensis HOM05D002888 ORTHO05D003321 1.6e-13 81.3 291 28.5
Sed0008018 Sechium edule HOM05D002888 ORTHO05D003321 1.6e-13 81.3 341 29.6
TPR.G30527 Trifolium pratense HOM05D000542 ORTHO05D003321 1.6e-13 81.3 253 31.2
Atru.chr13.1094 Acer truncatum HOM05D002888 ORTHO05D003321 2.1e-13 80.9 252 28.6
arahy.Tifrunner.gnm1.ann1.9WC044 Arachis hypogaea HOM05D002888 ORTHO05D003321 2.1e-13 80.9 355 29.3
PGR031G3382 Punica granatum HOM05D002888 ORTHO05D003321 2.1e-13 80.9 249 31.3
AL7G12440 Arabidopsis lyrata HOM05D002888 ORTHO05D003321 2.7e-13 80.5 335 28.4
AT4G40080 Arabidopsis thaliana HOM05D002888 ORTHO05D003321 2.7e-13 80.5 287 30.0
Ca_25141_v3 Cicer arietinum L. HOM05D002888 ORTHO05D003321 2.7e-13 80.5 241 32.4
Ca_30634_v3 Cicer arietinum L. HOM05D002888 ORTHO05D003321 2.7e-13 80.5 241 32.4
Migut.H02319 Erythranthe guttata HOM05D002888 ORTHO05D003321 3.6e-13 80.1 247 31.6
Rhsim10G0169700 Rhododendron simsii HOM05D002888 ORTHO05D003321 3.6e-13 80.1 358 30.7
Sabra05G0121900 Salix brachista HOM05D002888 ORTHO05D003321 3.6e-13 80.1 344 28.2
Potri.005G160800 Populus trichocarpa HOM05D002888 ORTHO05D003321 4.6e-13 79.7 318 29.9
Rhsim07G0207000 Rhododendron simsii HOM05D002888 ORTHO05D003321 4.6e-13 79.7 305 29.2
Rhsim07G0206000 Rhododendron simsii HOM05D002888 ORTHO05D003321 7.9e-13 79.0 305 28.9
Atru.chr13.1103 Acer truncatum HOM05D002888 ORTHO05D003321 1.0e-12 78.6 252 28.2
Glyma.11G242900 Glycine max HOM05D002888 ORTHO05D003321 1.3e-12 78.2 336 30.1
Medtr8g089850 Medicago truncatula HOM05D002888 ORTHO05D003321 1.3e-12 78.2 237 31.6
AUR62027189 Chenopodium quinoa HOM05D002888 ORTHO05D003321 1.8e-12 77.8 239 32.2
Ca_17774_v3 Cicer arietinum L. HOM05D002888 ORTHO05D003321 1.8e-12 77.8 265 28.3
Ciclev10001701m.g Citrus clementina HOM05D002888 ORTHO05D003321 1.8e-12 77.8 284 28.2
Glyma.18G014200 Glycine max HOM05D002888 ORTHO05D003321 2.3e-12 77.4 305 29.5
Phvul.002G260200 Phaseolus vulgaris HOM05D002888 ORTHO05D003321 2.3e-12 77.4 263 28.9
BcaNung00940 Brassica carinata HOM05D002888 ORTHO05D003321 3.0e-12 77.0 350 29.4
Prupe.1G524700 Prunus persica HOM05D002888 ORTHO05D003321 3.0e-12 77.0 240 30.8
Aa31LG6G15130 Aethionema arabicum HOM05D002888 ORTHO05D003321 3.9e-12 76.6 256 32.4
MSTRG.23365 Avicennia marina HOM05D002888 ORTHO05D003321 3.9e-12 76.6 347 29.4
EL10Ac6g14804 Beta vulgaris HOM05D002888 ORTHO05D003321 3.9e-12 76.6 316 28.8
MELO3C019004.2 Cucumis melo HOM05D002888 ORTHO05D003321 5.1e-12 76.3 305 26.9
Medtr3g086670 Medicago truncatula HOM05D002888 ORTHO05D003321 5.1e-12 76.3 263 30.0
Haze_18244 Corylus avellana HOM05D002888 ORTHO05D003321 6.7e-12 75.9 314 28.3
Manes.18G062900 Manihot esculenta HOM05D002888 ORTHO05D003321 6.7e-12 75.9 238 29.4
CDE03G0472 Ceratophyllum demersum HOM05D002888 ORTHO05D003321 8.7e-12 75.5 214 33.6
Gohir.A11G051000 Gossypium hirsutum HOM05D002888 ORTHO05D003321 8.7e-12 75.5 268 29.9
ClCG10G008340 Citrullus lanatus HOM05D002888 ORTHO05D003321 1.1e-11 75.1 331 26.9
Lsat_1_v5_gn_2_65861 Lactuca sativa HOM05D002888 ORTHO05D003321 1.5e-11 74.7 259 30.1
Psat7g057640 Pisum sativum HOM05D002888 ORTHO05D003321 1.5e-11 74.7 302 29.1
Oeu000873.1 Olea europaea HOM05D002888 ORTHO05D003321 2.5e-11 73.9 325 30.2
FAN13G3035 Fragaria x ananassa HOM05D002888 ORTHO05D003321 3.3e-11 73.6 291 27.1
TPR.G34945 Trifolium pratense HOM05D002888 ORTHO05D003321 3.3e-11 73.6 230 30.0
Dinv13633 Davidia involucrata HOM05D002888 ORTHO05D003321 7.4e-11 72.4 334 29.6
Nitab4.5_0004715g0010 Nicotiana tabacum HOM05D002888 ORTHO05D003321 7.4e-11 72.4 142 40.1
Duzib116G0178 Durio zibethinus HOM05D002888 ORTHO05D003321 9.7e-11 72.0 240 28.8
FvH4_5g36220 Fragaria vesca HOM05D002888 ORTHO05D003321 2.2e-10 70.9 240 29.6
QL02p002157 Quercus lobata HOM05D002888 ORTHO05D003321 2.2e-10 70.9 247 30.8
CsaV3_4G009090 Cucumis sativus L. HOM05D002888 ORTHO05D003321 2.8e-10 70.5 334 26.0
FAN08G3643 Fragaria x ananassa HOM05D002888 ORTHO05D003321 2.8e-10 70.5 290 27.6
Gohir.D11G054400 Gossypium hirsutum HOM05D002888 ORTHO05D003321 2.8e-10 70.5 268 28.7
Actinidia02765 Actinidia chinensis HOM05D002888 ORTHO05D003321 3.7e-10 70.1 208 33.7
HanXRQChr10g0314731 Helianthus annuus HOM05D002888 ORTHO05D003321 3.7e-10 70.1 259 29.3
SGA_v2.0_scaffold195G40823 Striga asiatica HOM05D002888 ORTHO05D003321 3.7e-10 70.1 243 29.2
FAN18G1864 Fragaria x ananassa HOM05D002888 ORTHO05D003321 6.3e-10 69.3 239 28.9
MD08G1190800 Malus domestica HOM05D002888 ORTHO05D003321 6.3e-10 69.3 245 30.6
CAN.G905.1 Capsicum annuum HOM05D002888 ORTHO05D003321 8.2e-10 68.9 153 37.9
MD15G1378100 Malus domestica HOM05D002888 ORTHO05D003321 8.2e-10 68.9 244 29.9
Cc10_g06560 Coffea canephora HOM05D002888 ORTHO05D003321 1.1e-09 68.6 243 29.6
Lj4C94T8 Lonicera japonica HOM05D002888 ORTHO05D003321 1.4e-09 68.2 310 27.4
VMungo1309G3157 Vigna mungo HOM05D002888 ORTHO05D003321 3.1e-09 67.0 238 30.7
CiPaw.15G044500 Carya illinoinensis HOM05D002888 ORTHO05D003321 5.3e-09 66.2 267 27.7
HanXRQChr14g0445001 Helianthus annuus HOM05D002888 ORTHO05D003321 5.3e-09 66.2 267 28.8
vmacro04702 Vaccinium macrocarpon HOM05D002888 ORTHO05D003321 5.3e-09 66.2 329 26.7
Ah.02g125790 Amaranthus hybridus HOM05D002888 ORTHO05D003321 9.1e-09 65.5 220 30.5
PSO675G6142 Papaver somniferum HOM05D002888 ORTHO05D003321 1.5e-08 64.7 265 24.9
TWI74G0173 Tripterygium wilfordii HOM05D002888 ORTHO05D003321 1.5e-08 64.7 220 27.7
Actinidia01866 Actinidia chinensis HOM05D002888 ORTHO05D003321 3.4e-08 63.5 168 38.7
Medtr3g099670 Medicago truncatula HOM05D002888 ORTHO05D003321 4.5e-08 63.2 237 27.8
vmacro22071 Vaccinium macrocarpon HOM05D002888 ORTHO05D003321 4.5e-08 63.2 204 32.8
Phvul.009G034000 Phaseolus vulgaris HOM05D002888 ORTHO05D003321 1.0e-07 62.0 247 30.0
Lj1g0019043 Lotus japonicus HOM05D002888 ORTHO05D003321 1.3e-07 61.6 245 29.8
ClCG00G002660 Citrullus lanatus HOM05D002888 ORTHO05D003321 5.0e-07 59.7 238 31.5
ClCG08G011370 Citrullus lanatus HOM05D002888 ORTHO05D003321 5.0e-07 59.7 238 31.5
Gohir.A05G222700 Gossypium hirsutum HOM05D002888 ORTHO05D003321 8.5e-07 58.9 240 27.5
Lalb_Chr08g0242261 Lupinus albus HOM05D002888 ORTHO05D003321 8.5e-07 58.9 277 30.0
Ca_16030_v3 Cicer arietinum L. HOM05D002888 ORTHO05D003321 1.1e-06 58.5 205 28.8
Gohir.D05G225400 Gossypium hirsutum HOM05D002888 ORTHO05D003321 1.4e-06 58.2 240 27.5
Gorai.009G232900 Gossypium raimondii HOM05D002888 ORTHO05D003321 1.4e-06 58.2 240 27.5
Psat5g047840 Pisum sativum HOM05D002888 ORTHO05D003321 1.4e-06 58.2 188 27.7
Oeu031415.1 Olea europaea HOM05D002888 ORTHO05D003321 1.9e-06 57.8 258 27.5
TPR.G6366 Trifolium pratense HOM05D002888 ORTHO05D003321 1.9e-06 57.8 245 26.5
Sed0014089 Sechium edule HOM05D002888 ORTHO05D003321 2.5e-06 57.4 228 31.6
Lalb_Chr11g0065221 Lupinus albus HOM05D002888 ORTHO05D003321 5.5e-06 56.2 244 27.9
PSO541G2212 Papaver somniferum HOM05D002888 ORTHO05D003321 5.5e-06 56.2 311 20.9
Sc01g0000910 Simmondsia chinensis HOM05D002888 ORTHO05D003321 7.2e-06 55.8 303 27.1


User provided reference genes

Program Settings