Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1399.4 708 100.0
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1208.4 635 94.5
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 634 87.7
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1125.5 638 86.7
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1123.6 634 86.8
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1123.2 634 86.9
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1120.1 633 86.6
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1119.8 634 86.6
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1119.4 634 86.6
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1119.4 634 86.6
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1118.6 634 86.6
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1118.6 634 86.9
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1117.8 640 85.8
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1116.7 634 86.1
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1115.9 634 86.4
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1114.8 632 86.4
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1114.8 634 86.8
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1114.0 634 86.8
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1114.0 634 86.0
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1114.0 634 86.6
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1112.8 634 86.0
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1112.8 632 85.6
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1112.8 632 86.2
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1110.9 630 86.2
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1110.5 634 86.3
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1110.1 634 86.3
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1109.4 634 86.1
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1109.0 630 86.3
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1109.0 634 85.3
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1108.2 634 85.5
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1108.2 630 85.9
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1108.2 631 86.4
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1108.2 639 85.9
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1107.8 632 85.3
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1107.8 628 86.9
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1107.8 634 85.6
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1107.4 634 85.3
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1106.7 630 86.2
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1106.7 630 86.2
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1106.7 630 86.2
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1106.3 630 86.0
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1105.9 634 85.3
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1105.9 634 86.1
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1105.5 630 85.6
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1104.4 632 85.3
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1104.4 641 84.4
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1104.0 634 85.5
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1104.0 632 85.3
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1103.6 634 85.5
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1103.6 632 85.8
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1103.2 630 86.0
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1103.2 634 85.3
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1103.2 632 85.0
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1103.2 630 85.1
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1102.8 630 85.9
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1102.8 630 86.2
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1102.0 634 85.3
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1102.0 652 83.3
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1101.7 638 84.8
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1101.7 634 85.5
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1101.3 634 85.3
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1100.5 648 83.8
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1100.1 634 85.3
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1100.1 634 84.9
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1099.7 628 85.8
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1099.3 633 84.8
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1099.3 634 85.2
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1099.0 634 84.5
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1099.0 634 85.0
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1098.6 630 85.9
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1098.2 640 83.4
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1098.2 627 85.6
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1097.8 634 85.0
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1097.4 633 84.8
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1097.4 634 85.2
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1096.6 634 84.7
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1096.3 687 79.9
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1095.9 637 84.0
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1095.9 634 86.0
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1095.5 656 82.5
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1094.7 656 82.6
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1094.0 635 84.1
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1093.2 661 82.0
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1093.2 644 84.2
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1092.8 634 85.2
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1092.0 635 84.3
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1092.0 664 81.3
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1091.3 632 85.6
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1087.8 634 84.5
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1087.0 629 84.4
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1082.0 630 84.8
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1080.9 630 84.4
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1080.1 632 84.2
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1076.6 634 84.2
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 4.8e-310 1067.4 656 80.8
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 2.4e-309 1065.1 629 83.8
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 6.9e-309 1063.5 640 81.7
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 3.0e-304 1048.1 628 81.8
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 1.5e-303 1045.8 582 87.3
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 5.7e-303 1043.9 628 81.7
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 3.1e-301 1038.1 644 81.4
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 1.3e-299 1032.7 628 80.4
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 2.2e-294 1015.4 631 78.6
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 2.2e-291 1005.4 631 78.1
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 3.6e-273 944.9 639 74.2
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 1.4e-272 943.0 534 86.0
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 4.0e-272 941.4 534 85.8
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 4.5e-268 927.9 538 84.9
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 4.7e-265 917.9 629 72.2
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 5.7e-263 911.0 651 71.3
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 9.8e-255 883.6 634 71.3
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 3.3e-250 868.6 549 79.4
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 9.5e-242 840.5 637 66.9
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 1.1e-237 827.0 634 69.2
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 1.6e-236 823.2 503 81.3
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.9e-234 816.2 503 81.3
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 4.3e-234 815.1 634 69.2
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 3.6e-233 812.0 496 82.1
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 2.9e-230 802.4 638 63.5
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 7.9e-196 688.0 444 76.8
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 6.9e-192 674.9 533 67.4
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 2.2e-182 643.3 643 52.3
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 6.5e-174 615.1 445 71.5
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 9.4e-173 611.3 354 84.5
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 5.2e-163 578.9 408 74.5
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 1.8e-152 543.9 312 86.2
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 2.9e-142 510.0 293 85.3
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 3.3e-133 479.9 271 86.7
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 4.4e-114 416.4 515 43.7
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 1.7e-89 334.7 198 82.3
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.1e-83 315.5 237 68.8
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 3.8e-81 307.0 231 66.7
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 9.3e-80 302.4 182 81.9
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 2.9e-73 280.8 163 83.4
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 1.6e-71 275.0 163 81.6
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 3.2e-64 250.8 634 31.2
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 6.5e-57 226.5 273 47.6
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 8.0e-47 193.0 226 51.8
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 1.5e-40 172.2 102 82.4
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 8.0e-39 166.4 86 88.4
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 2.3e-38 164.9 104 76.9
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 6.8e-38 163.3 99 79.8
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 1.5e-37 162.2 90 91.1
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 4.1e-35 154.1 102 71.6
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.5e-32 145.6 74 90.5
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 3.2e-32 144.4 159 53.5
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 9.5e-32 142.9 91 79.1
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 1.6e-31 142.1 91 78.0
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 2.0e-29 135.2 123 59.3
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 1.5e-21 109.0 53 100.0
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 2.2e-20 105.1 116 50.9
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.0e-17 96.3 63 73.0
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 2.5e-16 91.7 51 82.4
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 7.3e-16 90.1 60 73.3
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 9.5e-16 89.7 49 83.7
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 1.7e-12 79.0 56 64.3
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 2.2e-12 78.6 58 63.8
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 1.9e-08 65.5 43 69.8


User provided reference genes

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