Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 6.0e-82 307.4 147 100.0
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 1.4e-59 233.0 138 80.4
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 1.3e-55 219.9 147 72.8
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 2.2e-55 219.2 150 71.3
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 1.1e-54 216.9 116 83.6
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 1.1e-54 216.9 116 83.6
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 3.1e-54 215.3 146 71.2
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 9.1e-54 213.8 116 81.9
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 9.1e-54 213.8 142 72.5
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 9.1e-54 213.8 138 73.9
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 1.5e-53 213.0 150 70.7
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 2.0e-53 212.6 116 81.9
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.0e-53 212.6 116 81.9
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 2.6e-53 212.2 151 68.9
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 3.4e-53 211.8 123 77.2
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 3.4e-53 211.8 149 69.1
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 3.4e-53 211.8 116 81.9
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 4.5e-53 211.5 116 81.0
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 5.9e-53 211.1 147 70.7
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 7.7e-53 210.7 135 71.9
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 7.7e-53 210.7 133 73.7
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 1.0e-52 210.3 116 80.2
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 1.0e-52 210.3 116 80.2
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 1.0e-52 210.3 144 67.4
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 1.0e-52 210.3 116 81.0
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 1.0e-52 210.3 116 80.2
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 1.3e-52 209.9 141 70.2
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 1.7e-52 209.5 146 67.8
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 1.7e-52 209.5 149 69.8
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 1.7e-52 209.5 145 69.0
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 1.7e-52 209.5 133 72.9
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.7e-52 209.5 137 70.1
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 2.2e-52 209.1 116 81.0
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 2.2e-52 209.1 116 79.3
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 2.9e-52 208.8 150 66.0
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 3.8e-52 208.4 114 81.6
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 3.8e-52 208.4 144 67.4
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 5.0e-52 208.0 116 79.3
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 5.0e-52 208.0 116 79.3
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 6.5e-52 207.6 132 70.5
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 6.5e-52 207.6 138 69.6
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 6.5e-52 207.6 135 72.6
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 6.5e-52 207.6 116 78.4
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 8.5e-52 207.2 134 71.6
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 8.5e-52 207.2 116 80.2
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 8.5e-52 207.2 116 80.2
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 8.5e-52 207.2 116 79.3
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 1.1e-51 206.8 126 73.8
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 1.1e-51 206.8 136 69.9
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 1.4e-51 206.5 139 69.1
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 1.4e-51 206.5 138 70.3
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 1.9e-51 206.1 139 69.1
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 1.9e-51 206.1 139 69.1
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 1.9e-51 206.1 116 79.3
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.9e-51 206.1 133 72.2
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 1.9e-51 206.1 133 71.4
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 1.9e-51 206.1 116 78.4
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 1.9e-51 206.1 138 69.6
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 1.9e-51 206.1 138 69.6
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 1.9e-51 206.1 117 76.9
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.5e-51 205.7 116 79.3
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 2.5e-51 205.7 116 78.4
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 2.5e-51 205.7 116 78.4
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 3.2e-51 205.3 116 76.7
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 3.2e-51 205.3 152 64.5
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 3.2e-51 205.3 116 78.4
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 4.2e-51 204.9 136 69.9
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 4.2e-51 204.9 112 78.6
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 5.5e-51 204.5 146 65.8
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 5.5e-51 204.5 142 66.9
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 5.5e-51 204.5 116 77.6
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 5.5e-51 204.5 116 77.6
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 7.2e-51 204.1 147 66.7
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 7.2e-51 204.1 145 66.9
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 7.2e-51 204.1 144 66.7
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 9.4e-51 203.8 116 76.7
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 9.4e-51 203.8 147 66.0
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 9.4e-51 203.8 147 66.0
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 9.4e-51 203.8 119 78.2
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 1.2e-50 203.4 154 63.6
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 1.2e-50 203.4 146 66.4
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 1.2e-50 203.4 146 64.4
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 1.2e-50 203.4 116 76.7
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 1.2e-50 203.4 135 69.6
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 2.1e-50 202.6 150 64.7
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 4.7e-50 201.4 116 76.7
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 4.7e-50 201.4 112 77.7
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 1.4e-49 199.9 116 75.9
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 1.4e-49 199.9 153 64.1
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 1.8e-49 199.5 112 78.6
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 3.0e-49 198.7 138 66.7
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 6.7e-49 197.6 103 84.5
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 1.1e-48 196.8 133 68.4
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 2.0e-48 196.1 101 85.1
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 2.0e-48 196.1 134 67.9
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 2.6e-48 195.7 112 77.7
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 3.3e-48 195.3 135 67.4
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 5.7e-48 194.5 120 74.2
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 9.7e-48 193.7 102 83.3
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 1.7e-47 193.0 101 84.2
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 2.2e-47 192.6 149 62.4
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 2.8e-47 192.2 136 69.9
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 8.2e-47 190.7 168 57.7
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 8.2e-47 190.7 168 57.7
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 8.2e-47 190.7 105 79.0
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 8.2e-47 190.7 142 65.5
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 1.4e-46 189.9 105 81.0
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.8e-46 189.5 137 65.7
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.8e-46 189.5 137 65.7
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.4e-46 189.1 137 65.7
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 4.1e-46 188.3 104 76.9
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 7.0e-46 187.6 101 80.2
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.2e-45 186.8 104 76.0
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 2.0e-45 186.0 142 66.9
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 5.9e-45 184.5 139 64.7
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 2.7e-42 175.6 91 83.5
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 7.0e-38 161.0 116 67.2
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 7.7e-37 157.5 119 62.2
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 1.1e-35 153.7 78 82.1
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 4.2e-35 151.8 117 65.8
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 4.2e-35 151.8 123 60.2
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 1.2e-34 150.2 159 50.9
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 8.0e-34 147.5 81 80.2
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.0e-33 147.1 104 66.3
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 6.7e-33 144.4 96 71.9
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 8.8e-33 144.1 146 54.8
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 5.9e-29 131.3 78 74.4
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 5.9e-29 131.3 78 74.4
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 8.0e-26 120.9 61 82.0
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.8e-25 119.8 104 54.8
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 3.0e-25 119.0 102 61.8
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 4.8e-23 111.7 64 70.3
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 4.2e-19 98.6 61 67.2
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 4.0e-17 92.0 56 75.0
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 5.2e-17 91.7 43 83.7
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 8.3e-15 84.3 59 64.4
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.1e-14 82.4 47 74.5
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.6e-10 68.9 35 80.0
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.3e-09 66.2 49 63.3
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 4.0e-09 65.5 42 66.7
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 7.5e-08 61.2 40 70.0
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 7.5e-08 61.2 65 55.4
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.4e-06 57.0 37 67.6
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.2e-06 55.8 30 70.0


User provided reference genes

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