Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1959.1 1011 100.0
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1644.4 1017 85.0
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1353.2 842 83.8
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1251.5 1032 66.2
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1250.3 1012 66.5
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1248.8 1003 66.7
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1248.4 1010 66.0
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1242.3 1036 65.3
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1232.2 1003 65.4
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1224.9 1009 64.8
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1224.2 1026 64.5
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1223.8 1009 65.4
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1213.4 1007 64.3
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1208.0 1031 63.4
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1203.7 1038 62.9
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1203.0 1024 62.7
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1198.7 1016 63.9
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1198.3 1042 63.2
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1197.6 1056 62.4
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1196.8 1013 63.5
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1196.4 1038 62.6
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1194.1 1033 63.3
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1193.7 1027 63.3
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1191.8 1024 63.1
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1191.4 1044 62.1
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1190.3 1015 63.4
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1190.3 1032 63.0
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1189.5 1043 62.9
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1189.5 1022 62.2
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1188.3 1043 62.8
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1187.9 1008 63.5
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1187.6 1030 62.5
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1185.2 1029 62.7
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1185.2 1010 63.5
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1184.5 1014 62.7
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1184.1 1037 62.5
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1182.5 1007 63.0
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1181.8 1007 63.6
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1179.5 1006 63.8
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1179.1 1010 63.3
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1178.3 1029 62.3
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1178.3 1010 63.3
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1176.0 1047 60.9
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1176.0 1033 62.5
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1174.8 1024 62.0
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1174.1 1035 62.1
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1172.5 1058 61.1
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1172.1 1015 62.5
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1171.8 1023 62.9
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1171.8 1023 62.9
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1171.4 1042 61.6
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1171.4 1039 61.6
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1170.2 1009 62.8
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1169.8 1041 61.9
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1168.3 969 64.2
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1167.9 1035 61.7
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1167.5 1016 63.8
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1167.1 1006 62.1
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1165.2 1035 61.7
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1164.4 1059 61.1
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1162.9 1012 63.1
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1161.4 1026 61.6
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1161.4 1033 61.7
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1161.0 1004 62.5
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1161.0 1002 62.9
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1160.6 1037 60.8
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1158.3 1013 62.9
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1158.3 1004 62.5
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1155.6 1032 60.9
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1155.2 1041 61.4
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1154.4 1008 62.1
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1154.4 1060 60.0
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1152.9 1034 61.5
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1152.9 925 66.8
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1151.3 980 62.9
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1149.4 1058 60.8
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1149.0 1023 62.4
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1146.7 981 62.7
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1146.0 1013 61.6
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1146.0 1027 62.0
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1144.8 1026 62.1
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1144.4 1026 61.2
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1144.4 1030 62.1
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1143.3 1025 61.9
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1142.5 1020 61.5
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1142.5 1008 62.1
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1141.7 1040 61.1
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1139.0 1004 61.7
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1136.3 1004 62.1
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1135.9 1016 61.3
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1134.4 1011 61.1
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1132.5 1006 61.7
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1130.5 1013 62.1
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1130.2 1038 60.2
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1130.2 1013 61.0
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1123.2 1007 61.9
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1119.8 1040 59.9
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1118.2 1025 59.7
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1117.8 1014 61.0
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1117.1 1012 61.2
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1115.5 1012 61.2
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1115.1 1015 60.0
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1113.6 988 61.2
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1111.3 1029 60.0
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1109.7 1011 61.1
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1109.0 987 61.0
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1107.8 988 60.9
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1107.0 995 60.7
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1106.7 1000 61.5
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1103.2 1014 60.9
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1096.6 893 66.6
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1095.5 1027 58.9
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1094.0 991 60.8
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1088.6 1011 59.7
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1086.6 1006 59.6
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1080.9 895 66.0
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1079.7 1005 58.7
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 5.8e-309 1064.3 1027 57.9
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 1.3e-308 1063.1 1014 58.4
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 4.6e-306 1054.7 1003 57.7
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 3.0e-305 1052.0 916 63.1
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 3.1e-302 1042.0 988 58.6
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 3.4e-301 1038.5 996 58.0
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 5.8e-301 1037.7 1004 57.7
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 4.3e-296 1021.5 930 59.8
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 1.6e-287 993.0 1014 56.7
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 1.2e-285 986.9 1031 55.3
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 2.4e-283 979.2 1054 53.4
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 2.1e-274 949.5 870 60.0
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.1e-272 943.7 883 57.5
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 2.4e-270 936.0 982 53.6
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.7e-268 929.9 793 65.3
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 6.1e-242 841.6 1031 47.5
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 2.7e-237 826.2 1007 47.5
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 7.2e-235 818.1 835 54.1
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.8e-233 811.6 967 47.3
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 8.8e-233 811.2 760 62.5
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.4e-232 809.3 972 47.3
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 1.3e-231 807.4 1024 50.1
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 2.4e-230 803.1 996 48.3
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.7e-228 797.0 807 54.9
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 6.2e-202 708.8 727 57.9
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.7e-197 693.3 886 46.2
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 5.8e-184 649.0 815 50.3
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 3.5e-173 613.2 651 54.2
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 3.2e-166 590.1 950 40.2
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.3e-159 568.2 719 51.9
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 3.1e-153 547.0 624 50.8
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 1.8e-140 504.6 663 47.4
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.0e-139 501.1 608 48.2
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 4.1e-137 493.4 628 46.7
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 2.2e-135 487.6 1107 32.5
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 2.3e-111 407.9 419 53.5
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 3.5e-104 384.0 620 41.6
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.7e-87 328.6 322 58.4
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 1.9e-86 325.1 542 39.5
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.2e-83 315.8 320 55.3
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 2.2e-74 285.0 1002 28.2
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 2.9e-74 284.6 271 59.0
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 4.1e-73 280.8 239 63.6
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 1.0e-55 223.0 264 51.5
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 2.0e-51 208.8 519 30.6
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 9.3e-49 199.9 951 24.2
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.6e-45 189.1 195 48.7
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.0e-44 184.5 153 58.2
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 7.6e-43 180.3 243 43.2
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 2.4e-36 158.7 156 56.4
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 2.0e-35 155.6 156 55.8
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 2.7e-32 145.2 189 45.5
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 4.1e-28 131.3 130 50.0
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 9.1e-28 130.2 123 52.8
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 3.9e-23 114.8 117 49.6
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 4.2e-17 94.7 104 47.1
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 7.2e-17 94.0 82 53.7
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 9.7e-14 83.6 62 69.4
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 3.6e-08 65.1 64 50.0


User provided reference genes

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