Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 2.1e-157 558.9 275 100.0
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 6.5e-122 441.0 281 79.4
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 2.3e-111 406.0 262 73.7
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 4.0e-111 405.2 262 73.3
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 5.2e-111 404.8 259 73.4
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 5.2e-111 404.8 259 74.1
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 5.2e-111 404.8 264 74.6
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 5.7e-110 401.4 263 74.1
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 7.5e-110 401.0 262 74.4
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 9.8e-110 400.6 264 71.6
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 1.3e-109 400.2 262 73.7
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 1.3e-109 400.2 262 73.3
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 1.7e-109 399.8 263 73.8
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 2.2e-109 399.4 262 72.9
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 2.8e-109 399.1 263 74.1
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 4.9e-109 398.3 262 74.0
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 6.3e-109 397.9 263 71.5
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 8.3e-109 397.5 263 72.2
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 1.4e-108 396.7 272 70.2
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 3.1e-108 395.6 265 71.7
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 4.1e-108 395.2 258 75.2
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 4.1e-108 395.2 263 71.9
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 5.4e-108 394.8 258 74.4
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 7.0e-108 394.4 264 72.0
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 7.0e-108 394.4 263 71.9
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 9.1e-108 394.0 264 71.6
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 1.2e-107 393.7 261 72.0
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 1.2e-107 393.7 270 72.2
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 1.6e-107 393.3 260 73.1
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 1.6e-107 393.3 274 68.2
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 3.5e-107 392.1 265 71.7
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 3.5e-107 392.1 263 71.5
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 3.5e-107 392.1 269 71.0
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 4.5e-107 391.7 259 73.7
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 7.7e-107 391.0 263 71.9
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 1.0e-106 390.6 263 70.3
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 1.0e-106 390.6 270 71.1
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.0e-106 390.6 260 73.5
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 2.3e-106 389.4 266 72.2
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 2.9e-106 389.0 262 72.1
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 3.8e-106 388.7 259 70.3
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 5.0e-106 388.3 258 72.9
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 8.6e-106 387.5 273 67.0
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 2.5e-105 386.0 268 68.7
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 3.3e-105 385.6 278 67.3
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 7.2e-105 384.4 267 68.5
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 7.2e-105 384.4 263 70.0
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 7.2e-105 384.4 261 69.7
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 9.5e-105 384.0 261 71.3
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 9.5e-105 384.0 258 71.7
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 1.2e-104 383.6 257 71.2
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 1.6e-104 383.3 261 69.0
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 2.1e-104 382.9 284 66.9
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 6.1e-104 381.3 269 67.7
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 6.1e-104 381.3 262 71.0
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 8.0e-104 380.9 263 69.2
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 1.0e-103 380.6 254 70.9
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 1.0e-103 380.6 262 69.8
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 1.4e-103 380.2 247 75.7
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 3.0e-103 379.0 269 66.9
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 5.2e-103 378.3 260 73.1
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 5.2e-103 378.3 265 68.3
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 5.2e-103 378.3 279 66.3
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 6.8e-103 377.9 264 68.2
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 6.8e-103 377.9 270 68.9
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 8.9e-103 377.5 262 70.2
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 1.2e-102 377.1 262 70.2
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 1.2e-102 377.1 279 67.7
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 1.5e-102 376.7 262 69.1
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 2.6e-102 375.9 265 67.9
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 5.7e-102 374.8 263 70.0
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 9.8e-102 374.0 266 68.8
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 2.9e-101 372.5 266 68.4
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 2.9e-101 372.5 262 71.4
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 8.3e-101 370.9 264 67.4
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 1.4e-100 370.2 267 68.9
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 1.8e-100 369.8 293 62.8
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.8e-100 369.8 259 68.7
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 3.2e-100 369.0 262 68.3
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 3.2e-100 369.0 259 68.0
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 5.4e-100 368.2 269 68.8
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 7.0e-100 367.9 254 68.9
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 7.0e-100 367.9 262 67.9
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 2.7e-99 365.9 276 65.6
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 3.5e-99 365.5 294 61.6
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 3.5e-99 365.5 265 67.5
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.0e-98 364.0 243 72.0
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 1.3e-98 363.6 259 66.8
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 1.7e-98 363.2 315 60.6
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 5.0e-98 361.7 233 75.1
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 3.3e-97 359.0 293 62.1
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 4.3e-97 358.6 261 68.2
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 2.8e-96 355.9 261 69.0
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 1.8e-95 353.2 253 68.4
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 9.8e-94 347.4 259 65.3
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 1.7e-93 346.7 254 66.9
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 6.4e-93 344.7 257 65.4
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 1.1e-92 344.0 254 66.9
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 3.2e-92 342.4 245 68.6
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 7.0e-92 341.3 253 67.2
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 2.0e-91 339.7 269 65.1
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 3.5e-91 339.0 263 65.4
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 1.5e-89 333.6 256 64.8
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 3.6e-88 328.9 254 64.6
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 3.1e-87 325.9 262 63.7
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 3.1e-87 325.9 245 62.9
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 4.0e-87 325.5 257 63.0
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.2e-86 323.9 243 66.3
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 4.1e-84 315.5 222 70.3
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 1.2e-83 313.9 244 64.3
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 1.0e-82 310.8 249 63.9
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 6.6e-82 308.1 245 63.3
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 4.0e-79 298.9 257 58.8
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 2.0e-78 296.6 208 71.2
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 3.0e-74 282.7 202 66.8
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 5.4e-68 261.9 176 69.3
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 3.5e-67 259.2 170 73.5
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 6.0e-67 258.5 265 54.0
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 2.8e-64 249.6 219 60.3
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 1.4e-63 247.3 216 56.9
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 2.1e-56 223.4 268 43.7
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 2.8e-56 223.0 254 49.6
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 2.4e-55 219.9 244 50.0
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 4.8e-48 195.7 248 43.5
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 6.9e-47 191.8 270 41.9
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 7.6e-46 188.3 118 75.4
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 7.6e-46 188.3 133 70.7
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 2.7e-43 179.9 120 73.3
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-37 161.0 139 62.6
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 4.3e-33 146.0 118 64.4
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 2.8e-32 143.3 113 61.1
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 3.1e-31 139.8 81 80.2
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 9.0e-31 138.3 86 73.3
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 4.3e-25 119.4 91 67.0
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 4.5e-22 109.4 236 29.2
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 7.7e-22 108.6 223 31.4
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 1.7e-21 107.5 85 61.2
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 2.7e-19 100.1 261 29.5
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 8.8e-18 95.1 246 31.7
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 2.0e-17 94.0 85 56.5
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 5.7e-17 92.4 55 80.0
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 5.7e-17 92.4 204 28.9
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 1.3e-13 81.3 55 70.9
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 1.5e-12 77.8 307 25.7
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 5.5e-12 75.9 53 66.0
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 5.5e-12 75.9 307 25.4
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 1.4e-10 71.2 85 45.9
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 2.3e-10 70.5 54 57.4
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 7.5e-09 65.5 47 59.6
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 9.7e-09 65.1 229 24.9
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 1.7e-08 64.3 40 72.5
Cre06.g253566 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D138934 2.8e-08 63.5 143 32.9
Cre06.g253851 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145445 2.8e-08 63.5 143 32.9
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 6.3e-08 62.4 46 58.7
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 8.2e-08 62.0 89 40.4
Cre06.g253900 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146689 1.4e-07 61.2 143 32.2
Cre06.g254002 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D141262 1.4e-07 61.2 143 32.2


User provided reference genes

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