Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0320400 Oryza sativa ssp. japonica HOM05D003366 ORTHO05D004045 2.6e-111 405.6 232 100.0
Zm00001eb414460 Zea mays HOM05D003366 ORTHO05D004045 9.9e-71 270.8 215 69.8
Os09g0255400 Oryza sativa ssp. japonica HOM05D003366 ORTHO05D004045 7.3e-58 228.0 216 58.8
Zm00001eb309260 Zea mays HOM05D003366 ORTHO05D004045 3.1e-48 196.1 166 60.2
Hma1.2p1_0629F.1_g192240 Hydrangea macrophylla HOM05D003366 ORTHO05D004045 1.1e-42 177.6 226 47.3
CSS0040673 Camellia sinensis var. sinensis HOM05D003366 ORTHO05D004045 1.9e-42 176.8 157 59.9
HPP92_022822 Vanilla planifolia HOM05D003366 ORTHO05D004045 2.5e-42 176.4 163 55.8
MBI14_g24035_MAGBIO Magnolia biondii HOM05D003366 ORTHO05D004045 2.8e-41 172.9 167 55.1
Nn6g34363 Nelumbo nucifera HOM05D003366 ORTHO05D004045 2.8e-41 172.9 161 54.0
AUR62009285 Chenopodium quinoa HOM05D003366 ORTHO05D004045 4.8e-41 172.2 161 55.9
Ciclev10015498m.g Citrus clementina HOM05D003366 ORTHO05D004045 4.8e-41 172.2 161 55.9
Duzib138G0143 Durio zibethinus HOM05D003366 ORTHO05D004045 4.8e-41 172.2 176 51.7
Medtr5g084030 Medicago truncatula HOM05D003366 ORTHO05D004045 8.1e-41 171.4 161 54.7
Lalb_Chr04g0250271 Lupinus albus HOM05D003366 ORTHO05D004045 1.1e-40 171.0 155 57.4
Actinidia18830 Actinidia chinensis HOM05D003366 ORTHO05D004045 1.4e-40 170.6 157 58.6
AUR62039696 Chenopodium quinoa HOM05D003366 ORTHO05D004045 1.4e-40 170.6 161 55.9
Dinv26592 Davidia involucrata HOM05D003366 ORTHO05D004045 1.4e-40 170.6 161 55.9
TAR626G1358 Trochodendron aralioides HOM05D003366 ORTHO05D004045 6.9e-40 168.3 161 54.0
HanXRQChr11g0329411 Helianthus annuus HOM05D003366 ORTHO05D004045 9.0e-40 167.9 174 51.1
Glyma.14G053300 Glycine max HOM05D003366 ORTHO05D004045 1.2e-39 167.5 161 53.4
Gorai.001G191000 Gossypium raimondii HOM05D003366 ORTHO05D004045 1.2e-39 167.5 162 53.1
AL8G20960 Arabidopsis lyrata HOM05D003366 ORTHO05D004045 1.5e-39 167.2 170 53.5
arahy.Tifrunner.gnm1.ann1.0B41PU Arachis hypogaea HOM05D003366 ORTHO05D004045 1.5e-39 167.2 161 54.0
Ca_06031_v3 Cicer arietinum L. HOM05D003366 ORTHO05D004045 1.5e-39 167.2 163 52.1
Glyma.02G259000 Glycine max HOM05D003366 ORTHO05D004045 1.5e-39 167.2 161 54.0
Gohir.A07G163900 Gossypium hirsutum HOM05D003366 ORTHO05D004045 1.5e-39 167.2 157 54.8
Lalb_Chr10g0105441 Lupinus albus HOM05D003366 ORTHO05D004045 1.5e-39 167.2 155 56.8
Psat1g185040 Pisum sativum HOM05D003366 ORTHO05D004045 1.5e-39 167.2 171 50.9
VMungo0647G1799 Vigna mungo HOM05D003366 ORTHO05D004045 1.5e-39 167.2 161 52.8
MD17G1118200 Malus domestica HOM05D003366 ORTHO05D004045 2.0e-39 166.8 155 56.8
Nn1g03151 Nelumbo nucifera HOM05D003366 ORTHO05D004045 2.0e-39 166.8 161 52.8
Gohir.D07G170900 Gossypium hirsutum HOM05D003366 ORTHO05D004045 2.6e-39 166.4 162 52.5
arahy.Tifrunner.gnm1.ann1.8VJ98X Arachis hypogaea HOM05D003366 ORTHO05D004045 3.4e-39 166.0 161 53.4
MSTRG.9698 Avicennia marina HOM05D003366 ORTHO05D004045 3.4e-39 166.0 157 54.1
EL10Ac2g04021 Beta vulgaris HOM05D003366 ORTHO05D004045 3.4e-39 166.0 164 56.1
Prupe.3G196200 Prunus persica HOM05D003366 ORTHO05D004045 3.4e-39 166.0 151 57.0
arahy.Tifrunner.gnm1.ann1.SQZ1L0 Arachis hypogaea HOM05D003366 ORTHO05D004045 4.5e-39 165.6 161 53.4
Nitab4.5_0000025g0230 Nicotiana tabacum HOM05D003366 ORTHO05D004045 4.5e-39 165.6 187 51.3
Hund03398 Selenicereus undatus HOM05D003366 ORTHO05D004045 4.5e-39 165.6 161 54.7
Psat2g028840 Pisum sativum HOM05D003366 ORTHO05D004045 5.8e-39 165.2 163 53.4
LjContig00357g0014369 Lotus japonicus HOM05D003366 ORTHO05D004045 7.6e-39 164.9 163 52.8
RcHm_v2.0_Chr2g0155751 Rosa chinensis HOM05D003366 ORTHO05D004045 7.6e-39 164.9 156 56.4
SalBow5G5386 Salvia bowleyana HOM05D003366 ORTHO05D004045 7.6e-39 164.9 158 55.7
COL.COLO4_19639 Corchorus olitorius HOM05D003366 ORTHO05D004045 9.9e-39 164.5 157 54.8
FvH4_6g40500 Fragaria vesca HOM05D003366 ORTHO05D004045 9.9e-39 164.5 156 56.4
FAN02G0729 Fragaria x ananassa HOM05D003366 ORTHO05D004045 9.9e-39 164.5 156 56.4
Sed0016337 Sechium edule HOM05D003366 ORTHO05D004045 9.9e-39 164.5 157 56.1
MELO3C024189.2 Cucumis melo HOM05D003366 ORTHO05D004045 1.3e-38 164.1 157 55.4
PGR031G3285 Punica granatum HOM05D003366 ORTHO05D004045 1.3e-38 164.1 157 54.8
Cc04_g11110 Coffea canephora HOM05D003366 ORTHO05D004045 1.7e-38 163.7 171 51.5
arahy.Tifrunner.gnm1.ann1.65EY62 Arachis hypogaea HOM05D003366 ORTHO05D004045 2.2e-38 163.3 161 52.2
Lsat_1_v5_gn_5_122300 Lactuca sativa HOM05D003366 ORTHO05D004045 2.2e-38 163.3 173 52.6
PSO541G3149 Papaver somniferum HOM05D003366 ORTHO05D004045 2.2e-38 163.3 165 52.7
PSO675G3120 Papaver somniferum HOM05D003366 ORTHO05D004045 2.2e-38 163.3 165 52.1
SalBow5G1323 Salvia bowleyana HOM05D003366 ORTHO05D004045 2.2e-38 163.3 158 55.1
Thecc.01G197700 Theobroma cacao HOM05D003366 ORTHO05D004045 2.2e-38 163.3 157 54.1
TWI36G0699 Tripterygium wilfordii HOM05D003366 ORTHO05D004045 2.2e-38 163.3 162 52.5
ATR0751G192 Amborella trichopoda HOM05D003366 ORTHO05D004045 2.9e-38 162.9 154 57.1
CiPaw.03G282800 Carya illinoinensis HOM05D003366 ORTHO05D004045 2.9e-38 162.9 157 53.5
CsaV3_7G002440 Cucumis sativus L. HOM05D003366 ORTHO05D004045 2.9e-38 162.9 157 54.1
Gorai.007G165300 Gossypium raimondii HOM05D003366 ORTHO05D004045 2.9e-38 162.9 162 51.2
MD09G1129300 Malus domestica HOM05D003366 ORTHO05D004045 2.9e-38 162.9 155 55.5
vmacro09477 Vaccinium macrocarpon HOM05D003366 ORTHO05D004045 2.9e-38 162.9 157 56.1
CANSAT64G2473 Cannabis sativa HOM05D003366 ORTHO05D004045 3.8e-38 162.5 155 54.8
Manes.12G063602 Manihot esculenta HOM05D003366 ORTHO05D004045 3.8e-38 162.5 162 51.9
TAR629G0562 Trochodendron aralioides HOM05D003366 ORTHO05D004045 3.8e-38 162.5 153 53.6
AL8G20910 Arabidopsis lyrata HOM05D003366 ORTHO05D004045 4.9e-38 162.2 189 49.7
Cpa.g.sc136.37 Carica papaya HOM05D003366 ORTHO05D004045 4.9e-38 162.2 177 49.7
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 4.9e-38 162.2 177 50.8
Gohir.D11G155000 Gossypium hirsutum HOM05D003366 ORTHO05D004045 6.4e-38 161.8 162 50.6
Oeu045495.1 Olea europaea HOM05D003366 ORTHO05D004045 6.4e-38 161.8 157 53.5
TWI18G0380 Tripterygium wilfordii HOM05D003366 ORTHO05D004045 6.4e-38 161.8 162 51.9
GSVIVG01030116001 Vitis vinifera HOM05D003366 ORTHO05D004045 6.4e-38 161.8 161 52.8
Migut.D02018 Erythranthe guttata HOM05D003366 ORTHO05D004045 8.4e-38 161.4 157 54.8
FAN10G3881 Fragaria x ananassa HOM05D003366 ORTHO05D004045 8.4e-38 161.4 156 55.8
FAN14G5851 Fragaria x ananassa HOM05D003366 ORTHO05D004045 8.4e-38 161.4 156 55.8
Sp2g18590 Schrenkiella parvula HOM05D003366 ORTHO05D004045 8.4e-38 161.4 163 53.4
AUR62014541 Chenopodium quinoa HOM05D003366 ORTHO05D004045 1.4e-37 160.6 165 52.7
Nitab4.5_0000774g0060 Nicotiana tabacum HOM05D003366 ORTHO05D004045 1.4e-37 160.6 187 49.7
AT5G48220 Arabidopsis thaliana HOM05D003366 ORTHO05D004045 1.9e-37 160.2 176 51.1
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 2.4e-37 159.8 157 54.1
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 2.4e-37 159.8 157 54.1
Nitab4.5_0003542g0080 Nicotiana tabacum HOM05D003366 ORTHO05D004045 2.4e-37 159.8 172 50.6
QL04p067730 Quercus lobata HOM05D003366 ORTHO05D004045 2.4e-37 159.8 156 54.5
Cfa014212 Carpinus fangiana HOM05D003366 ORTHO05D004045 3.2e-37 159.5 157 54.1
FAN05G5269 Fragaria x ananassa HOM05D003366 ORTHO05D004045 3.2e-37 159.5 158 55.7
Hund13735 Selenicereus undatus HOM05D003366 ORTHO05D004045 3.2e-37 159.5 152 53.9
Gohir.A11G148200 Gossypium hirsutum HOM05D003366 ORTHO05D004045 4.2e-37 159.1 177 49.2
Solyc03g111850.3 Solanum lycopersicum HOM05D003366 ORTHO05D004045 4.2e-37 159.1 172 51.7
TWI75G1649 Tripterygium wilfordii HOM05D003366 ORTHO05D004045 4.2e-37 159.1 161 50.3
AUR62008962 Chenopodium quinoa HOM05D003366 ORTHO05D004045 5.5e-37 158.7 157 52.9
Sabra14G0128900 Salix brachista HOM05D003366 ORTHO05D004045 5.5e-37 158.7 142 57.7
Nitab4.5_0000510g0170 Nicotiana tabacum HOM05D003366 ORTHO05D004045 7.1e-37 158.3 172 50.6
Sopen03g030970 Solanum pennellii HOM05D003366 ORTHO05D004045 7.1e-37 158.3 172 51.7
Lj8A136T94 Lonicera japonica HOM05D003366 ORTHO05D004045 1.2e-36 157.5 163 52.8
Phvul.008G218200 Phaseolus vulgaris HOM05D003366 ORTHO05D004045 1.2e-36 157.5 143 57.3
Potri.014G169100 Populus trichocarpa HOM05D003366 ORTHO05D004045 1.2e-36 157.5 172 51.2
EL10Ac2g04609 Beta vulgaris HOM05D003366 ORTHO05D004045 1.6e-36 157.1 156 53.8
CARHR184070 Cardamine hirsuta HOM05D003366 ORTHO05D004045 1.6e-36 157.1 143 57.3
PGSC0003DMG400015153 Solanum tuberosum HOM05D003366 ORTHO05D004045 1.6e-36 157.1 172 51.2
SGA_v2.0_scaffold25G10778 Striga asiatica HOM05D003366 ORTHO05D004045 1.6e-36 157.1 157 52.9
Carub.0003s2605 Capsella rubella HOM05D003366 ORTHO05D004045 2.1e-36 156.8 221 44.3
Peaxi162Scf00801g00730 Petunia axillaris HOM05D003366 ORTHO05D004045 2.1e-36 156.8 183 49.7
AT2G04400 Arabidopsis thaliana HOM05D003366 ORTHO05D004045 2.7e-36 156.4 222 44.6
Carub.0008s0779 Capsella rubella HOM05D003366 ORTHO05D004045 2.7e-36 156.4 186 48.9
CDE02G1598 Ceratophyllum demersum HOM05D003366 ORTHO05D004045 2.7e-36 156.4 176 51.7
Thecc.01G198100 Theobroma cacao HOM05D003366 ORTHO05D004045 2.7e-36 156.4 173 49.7
DCAR_019671 Daucus carota HOM05D003366 ORTHO05D004045 3.5e-36 156.0 151 53.6
Ah.16g105750 Amaranthus hybridus HOM05D003366 ORTHO05D004045 6.0e-36 155.2 161 53.4
Lsat_1_v5_gn_7_97420 Lactuca sativa HOM05D003366 ORTHO05D004045 1.0e-35 154.5 163 49.1
Eucgr.A01368 Eucalyptus grandis HOM05D003366 ORTHO05D004045 1.3e-35 154.1 159 52.8
THA.LOC104808841 Tarenaya hassleriana HOM05D003366 ORTHO05D004045 1.3e-35 154.1 159 51.6
A06p39320 Brassica napus HOM05D003366 ORTHO05D004045 1.8e-35 153.7 143 56.6
BraA06t26847Z Brassica rapa HOM05D003366 ORTHO05D004045 1.8e-35 153.7 143 56.6
ECA234G0856 Erigeron canadensis HOM05D003366 ORTHO05D004045 1.8e-35 153.7 169 49.7
Zm00001eb424560 Zea mays HOM05D003366 ORTHO05D004045 1.8e-35 153.7 137 61.3
AL3G42040 Arabidopsis lyrata HOM05D003366 ORTHO05D004045 2.3e-35 153.3 222 44.1
BcaC06g30818 Brassica carinata HOM05D003366 ORTHO05D004045 3.0e-35 152.9 169 51.5
Rhsim04G0030100 Rhododendron simsii HOM05D003366 ORTHO05D004045 3.0e-35 152.9 157 53.5
Hma1.2p1_0599F.1_g187060 Hydrangea macrophylla HOM05D003366 ORTHO05D004045 3.9e-35 152.5 227 42.3
BcaB08g34466 Brassica carinata HOM05D003366 ORTHO05D004045 5.1e-35 152.1 163 52.1
HanXRQChr10g0306821 Helianthus annuus HOM05D003366 ORTHO05D004045 5.1e-35 152.1 145 57.2
RcHm_v2.0_Chr5g0011911 Rosa chinensis HOM05D003366 ORTHO05D004045 5.1e-35 152.1 149 55.7
Migut.O00185 Erythranthe guttata HOM05D003366 ORTHO05D004045 6.7e-35 151.8 165 49.1
PSO210G6970 Papaver somniferum HOM05D003366 ORTHO05D004045 8.7e-35 151.4 167 50.9
C07p38950 Brassica napus HOM05D003366 ORTHO05D004045 1.1e-34 151.0 143 55.9
BolC7t44416H Brassica oleracea HOM05D003366 ORTHO05D004045 1.1e-34 151.0 143 55.9
Aqoxy1G04276 Aquilegia oxysepala HOM05D003366 ORTHO05D004045 1.5e-34 150.6 155 52.3
Thhalv10004384m.g Eutrema salsugineum HOM05D003366 ORTHO05D004045 1.5e-34 150.6 178 48.9
PSO210G3015 Papaver somniferum HOM05D003366 ORTHO05D004045 1.5e-34 150.6 138 58.0
THA.LOC104819033 Tarenaya hassleriana HOM05D003366 ORTHO05D004045 1.9e-34 150.2 158 52.5
Sp3g23210 Schrenkiella parvula HOM05D003366 ORTHO05D004045 2.5e-34 149.8 198 45.5
CARHR102260 Cardamine hirsuta HOM05D003366 ORTHO05D004045 3.3e-34 149.4 170 47.6
Aa31LG5G13060 Aethionema arabicum HOM05D003366 ORTHO05D004045 4.3e-34 149.1 168 50.0
Aa31sc202G30 Aethionema arabicum HOM05D003366 ORTHO05D004045 4.3e-34 149.1 199 43.7
Ah.16g101920 Amaranthus hybridus HOM05D003366 ORTHO05D004045 5.6e-34 148.7 162 49.4
Thhalv10002557m.g Eutrema salsugineum HOM05D003366 ORTHO05D004045 5.6e-34 148.7 169 49.1
A03p44300 Brassica napus HOM05D003366 ORTHO05D004045 7.4e-34 148.3 157 52.2
SGA_v2.0_scaffold7G04167 Striga asiatica HOM05D000527 ORTHO05D000559 7.4e-34 148.3 157 51.6
BolC3t17760H Brassica oleracea HOM05D003366 ORTHO05D004045 1.3e-33 147.5 174 48.3
BcaC01g03208 Brassica carinata HOM05D003366 ORTHO05D004045 1.6e-33 147.1 174 48.3
BraA03t13559Z Brassica rapa HOM05D003366 ORTHO05D004045 1.6e-33 147.1 179 48.0
C03p54710 Brassica napus HOM05D003366 ORTHO05D004045 2.8e-33 146.4 157 51.0
Aqoxy3G01284 Aquilegia oxysepala HOM05D003366 ORTHO05D004045 4.8e-33 145.6 182 47.3
Lj1A799T34 Lonicera japonica HOM05D003366 ORTHO05D004045 6.2e-33 145.2 163 51.5
AagrBONN_evm.TU.Sc2ySwM_344.1836 Anthoceros agrestis HOM05D003366 ORTHO05D004045 5.8e-31 138.7 170 47.6
CAN.G126.88 Capsicum annuum HOM05D003366 ORTHO05D004045 5.8e-31 138.7 128 58.6
Thecc.01G197800 Theobroma cacao HOM05D003366 ORTHO05D006437 1.0e-30 137.9 113 60.2
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 1.4e-29 134.0 176 47.2
BcaC08g43008 Brassica carinata HOM05D003366 ORTHO05D004045 2.5e-29 133.3 181 45.3
ClCG02G002960 Citrullus lanatus HOM05D003366 ORTHO05D004045 2.5e-29 133.3 150 49.3
Pp3c10_25830 Physcomitrium patens HOM05D003366 ORTHO05D004045 2.5e-29 133.3 149 49.7
C06p02570 Brassica napus HOM05D003366 ORTHO05D004045 4.2e-29 132.5 166 45.8
SEGI_01884 Sequoiadendron giganteum HOM05D003366 ORTHO05D004045 4.2e-29 132.5 133 54.1
BolC6t35385H Brassica oleracea HOM05D003366 ORTHO05D004045 1.2e-28 131.0 166 46.4
PRCOL_00002196 Prasinoderma coloniale HOM05D003366 ORTHO05D004045 7.9e-28 128.3 111 55.9
unitig_21.g20442 Utricularia gibba HOM05D003366 ORTHO05D004045 7.9e-28 128.3 157 45.2
Actinidia35201 Actinidia chinensis HOM05D003366 ORTHO05D004045 1.8e-27 127.1 157 47.1
Mapoly0007s0091 Marchantia polymorpha HOM05D003366 ORTHO05D004045 5.1e-27 125.6 137 48.9
MCO11G068 Micromonas commoda HOM05D003366 ORTHO05D004045 2.5e-26 123.2 115 54.8
VMungo0647G0370 Vigna mungo HOM05D003366 ORTHO05D004045 7.4e-26 121.7 140 45.7
Oeu023460.1 Olea europaea HOM05D003366 ORTHO05D004045 3.7e-25 119.4 129 50.4
BcaB06g26784 Brassica carinata HOM05D003366 ORTHO05D004045 4.8e-25 119.0 162 44.4
FAN09G3658 Fragaria x ananassa HOM05D004224 ORTHO05D006437 4.8e-25 119.0 93 63.4
Peaxi162Scf00089g01132 Petunia axillaris HOM05D003366 ORTHO05D004045 8.2e-25 118.2 131 48.1
SHI10170 Sapria himalayana HOM05D003366 ORTHO05D004045 9.0e-24 114.8 144 45.8
TPR.G20196 Trifolium pratense HOM05D003366 ORTHO05D004045 1.2e-23 114.4 73 74.0
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.5e-23 114.0 133 52.6
SMO143G0312 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 3.4e-23 112.8 137 45.3
Sc21g0000490 Simmondsia chinensis HOM05D003366 ORTHO05D004045 7.6e-23 111.7 85 63.5
Os04g0467700 Oryza sativa ssp. japonica HOM05D003366 ORTHO05D004045 1.3e-22 110.9 87 65.5
Cre13.g602350 Chlamydomonas reinhardtii HOM05D003366 ORTHO05D004045 3.8e-22 109.4 102 54.9
CBR_g10789 Chara braunii HOM05D003366 ORTHO05D004045 3.2e-21 106.3 98 59.2
Thecc.10G171200 Theobroma cacao HOM05D003366 ORTHO05D004045 3.9e-19 99.4 129 45.0
CDE02G1466 Ceratophyllum demersum HOM05D003366 ORTHO05D004045 1.7e-17 94.0 152 38.8
SEGI_10339 Sequoiadendron giganteum HOM05D003366 ORTHO05D004045 5.0e-14 82.4 117 40.2
BolC7t41475H Brassica oleracea HOM05D003366 ORTHO05D027103 4.7e-12 75.9 70 51.4
Oeu045496.1 Olea europaea HOM05D003366 ORTHO05D004045 4.7e-12 75.9 110 43.6
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.0e-11 74.7 104 48.1
C07p10260 Brassica napus HOM05D003366 ORTHO05D027103 4.4e-10 69.3 55 61.8
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 1.1e-08 64.7 82 47.6


User provided reference genes

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