Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0129400 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D299764 4.1e-102 374.8 197 100.0
Os08g0226400 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 6.3e-18 95.1 158 39.2
Os08g0228200 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.6e-13 80.5 193 34.2
Os08g0128900 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 2.7e-13 79.7 158 35.4
Os08g0128700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 4.7e-13 79.0 160 31.9
Os08g0226000 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 4.7e-13 79.0 149 35.6
Os08g0226800 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 3.9e-12 75.9 148 32.4
Os08g0129300 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 7.0e-09 65.1 157 33.8
PSO478G2779 Papaver somniferum HOM05D000563 ORTHO05D000536 1.2e-08 64.3 134 32.1
SMO364G0489 Selaginella moellendorffii HOM05D000563 ORTHO05D000536 3.5e-08 62.8 156 28.2
Os08g0406600 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 5.9e-08 62.0 96 43.8
TWI09G1020 Tripterygium wilfordii HOM05D000563 ORTHO05D000536 7.7e-08 61.6 152 28.9
SalBow6G0773 Salvia bowleyana HOM05D000563 ORTHO05D000536 1.3e-07 60.8 149 29.5
Mapoly0051s0064 Marchantia polymorpha HOM05D000563 ORTHO05D000536 2.2e-07 60.1 149 30.2
PSO478G2840 Papaver somniferum HOM05D000563 ORTHO05D000536 2.2e-07 60.1 160 28.8
FAN27G0978 Fragaria x ananassa HOM05D000563 ORTHO05D000536 2.9e-07 59.7 176 27.3
Mapoly0051s0067 Marchantia polymorpha HOM05D000563 ORTHO05D000536 2.9e-07 59.7 151 27.8
Os10g0427300 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 2.9e-07 59.7 167 25.7
Zm00001eb414110 Zea mays HOM05D000563 ORTHO05D000536 2.9e-07 59.7 165 29.1
Prupe.2G240000 Prunus persica HOM05D000563 ORTHO05D000536 6.5e-07 58.5 149 28.2
VMungo0720G2654 Vigna mungo HOM05D000563 ORTHO05D000536 6.5e-07 58.5 193 26.4
Dinv11259 Davidia involucrata HOM05D000563 ORTHO05D000536 1.1e-06 57.8 151 28.5
Eucgr.K03404 Eucalyptus grandis HOM05D000563 ORTHO05D000536 1.1e-06 57.8 158 28.5
FAN01G0972 Fragaria x ananassa HOM05D000563 ORTHO05D000536 1.1e-06 57.8 149 27.5
FAN06G2681 Fragaria x ananassa HOM05D000563 ORTHO05D000536 1.1e-06 57.8 149 27.5
Lalb_Chr21g0306581 Lupinus albus HOM05D000563 ORTHO05D000536 1.1e-06 57.8 165 27.3
MD01G1139500 Malus domestica HOM05D000563 ORTHO05D000536 1.1e-06 57.8 149 30.2
MD07G1203900 Malus domestica HOM05D000563 ORTHO05D000536 1.1e-06 57.8 152 28.9
Os08g0406500 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.1e-06 57.8 183 31.7
Rhsim13G0022300 Rhododendron simsii HOM05D000563 ORTHO05D000536 1.1e-06 57.8 169 28.4
THA.LOC104822314 Tarenaya hassleriana HOM05D000563 ORTHO05D000536 1.1e-06 57.8 116 37.1
FvH4_7g23081 Fragaria vesca HOM05D000563 ORTHO05D000536 1.5e-06 57.4 149 27.5
FAN06G3964 Fragaria x ananassa HOM05D000563 ORTHO05D000536 1.5e-06 57.4 149 27.5
FAN10G0720 Fragaria x ananassa HOM05D000563 ORTHO05D000536 1.5e-06 57.4 149 27.5
FAN10G2122 Fragaria x ananassa HOM05D000563 ORTHO05D000536 1.5e-06 57.4 149 27.5
MD11G1290500 Malus domestica HOM05D000563 ORTHO05D000536 1.5e-06 57.4 148 28.4
RcHm_v2.0_Chr1g0368341 Rosa chinensis HOM05D000563 ORTHO05D000536 1.5e-06 57.4 149 27.5
FAN01G2060 Fragaria x ananassa HOM05D000563 ORTHO05D000536 1.9e-06 57.0 149 27.5
FAN03G1350 Fragaria x ananassa HOM05D000563 ORTHO05D000536 1.9e-06 57.0 149 28.2
vmacro02547 Vaccinium macrocarpon HOM05D000563 ORTHO05D000536 1.9e-06 57.0 146 28.1
Atru.chr4.2592 Acer truncatum HOM05D000563 ORTHO05D000536 2.5e-06 56.6 149 29.5
MSTRG.21578 Avicennia marina HOM05D000563 ORTHO05D000536 2.5e-06 56.6 164 28.0
C03p42020 Brassica napus HOM05D000563 ORTHO05D000536 2.5e-06 56.6 105 36.2
Glyma.10G024300 Glycine max HOM05D000563 ORTHO05D000536 2.5e-06 56.6 189 27.5
Lalb_Chr02g0142901 Lupinus albus HOM05D000563 ORTHO05D000536 2.5e-06 56.6 176 27.8
Pp3c12_280 Physcomitrium patens HOM05D000563 ORTHO05D000536 2.5e-06 56.6 149 26.8
Pp3c12_870 Physcomitrium patens HOM05D000563 ORTHO05D000536 2.5e-06 56.6 149 26.8
THA.LOC104802741 Tarenaya hassleriana HOM05D000563 ORTHO05D000536 2.5e-06 56.6 103 35.9
VMungo1383G0226 Vigna mungo HOM05D000563 ORTHO05D000536 2.5e-06 56.6 149 27.5
A03p09250 Brassica napus HOM05D000563 ORTHO05D000536 3.2e-06 56.2 155 27.7
Ciclev10005094m.g Citrus clementina HOM05D000563 ORTHO05D000536 3.2e-06 56.2 177 29.9
Duzib212G0612 Durio zibethinus HOM05D000563 ORTHO05D000536 3.2e-06 56.2 167 29.3
HanXRQChr12g0369531 Helianthus annuus HOM05D000563 ORTHO05D000536 3.2e-06 56.2 151 27.8
Lj5g0001400 Lotus japonicus HOM05D000563 ORTHO05D000536 3.2e-06 56.2 156 27.6
Potri.008G200700 Populus trichocarpa HOM05D000563 ORTHO05D000536 3.2e-06 56.2 156 28.8
Zm00001eb329510 Zea mays HOM05D000563 ORTHO05D000536 3.2e-06 56.2 89 37.1
arahy.Tifrunner.gnm1.ann1.VZ4Q2L Arachis hypogaea HOM05D000563 ORTHO05D000536 4.2e-06 55.8 146 28.1
BcaB04g21323 Brassica carinata HOM05D000563 ORTHO05D000536 4.2e-06 55.8 101 34.7
CANSAT78G1014 Cannabis sativa HOM05D000563 ORTHO05D000536 4.2e-06 55.8 161 28.6
Lj8A79G93 Lonicera japonica HOM05D000563 ORTHO05D000536 4.2e-06 55.8 149 26.8
MD03G1269700 Malus domestica HOM05D000563 ORTHO05D000536 4.2e-06 55.8 148 27.7
Peaxi162Scf00980g00017 Petunia axillaris HOM05D000563 ORTHO05D000536 4.2e-06 55.8 145 27.6
Psat6g141440 Pisum sativum HOM05D000563 ORTHO05D000536 4.2e-06 55.8 170 27.6
Prupe.1G149100 Prunus persica HOM05D000563 ORTHO05D000536 4.2e-06 55.8 158 29.7
Prupe.8G245800 Prunus persica HOM05D000563 ORTHO05D000536 4.2e-06 55.8 147 27.9
Hund16055 Selenicereus undatus HOM05D000563 ORTHO05D000536 4.2e-06 55.8 150 27.3
TPR.G32825 Trifolium pratense HOM05D000563 ORTHO05D000536 4.2e-06 55.8 164 27.4
AL6G30350 Arabidopsis lyrata HOM05D000563 ORTHO05D000536 5.5e-06 55.5 89 38.2
AT5G19000 Arabidopsis thaliana HOM05D000563 ORTHO05D000536 5.5e-06 55.5 89 38.2
BcaB03g14657 Brassica carinata HOM05D000563 ORTHO05D000536 5.5e-06 55.5 98 36.7
Eucgr.G02967 Eucalyptus grandis HOM05D000563 ORTHO05D000536 5.5e-06 55.5 87 36.8
FAN24G2483 Fragaria x ananassa HOM05D000563 ORTHO05D000536 5.5e-06 55.5 170 29.4
HanXRQChr15g0466501 Helianthus annuus HOM05D000563 ORTHO05D000536 5.5e-06 55.5 160 29.4
Hma1.2p1_0628F.1_g191810 Hydrangea macrophylla HOM05D000563 ORTHO05D000536 5.5e-06 55.5 158 28.5
Lalb_Chr06g0163111 Lupinus albus HOM05D000563 ORTHO05D000536 5.5e-06 55.5 169 27.8
Phvul.001G148400 Phaseolus vulgaris HOM05D000563 ORTHO05D000536 5.5e-06 55.5 149 27.5
Pp3c17_930 Physcomitrium patens HOM05D000563 ORTHO05D000536 5.5e-06 55.5 149 26.8
Pp3c17_931 Physcomitrium patens HOM05D000563 ORTHO05D000536 5.5e-06 55.5 149 26.8
Sc19g0004620 Simmondsia chinensis HOM05D000563 ORTHO05D000536 5.5e-06 55.5 189 27.0
SGA_v2.0_scaffold11G05791 Striga asiatica HOM05D000563 ORTHO05D000536 5.5e-06 55.5 185 27.6
SGA_v2.0_scaffold172G39037 Striga asiatica HOM05D000563 ORTHO05D000536 5.5e-06 55.5 162 27.2
GSVIVG01011076001 Vitis vinifera HOM05D000563 ORTHO05D000536 5.5e-06 55.5 160 27.5
Aqoxy5G00540 Aquilegia oxysepala HOM05D000563 ORTHO05D000536 7.2e-06 55.1 154 27.3
arahy.Tifrunner.gnm1.ann1.CF9G3P Arachis hypogaea HOM05D000563 ORTHO05D000536 7.2e-06 55.1 145 28.3
arahy.Tifrunner.gnm1.ann1.TWVU8P Arachis hypogaea HOM05D000563 ORTHO05D000536 7.2e-06 55.1 143 28.0
EL10Ac2g04698 Beta vulgaris HOM05D000563 ORTHO05D000536 7.2e-06 55.1 142 26.8
BcaB08g36629 Brassica carinata HOM05D000563 ORTHO05D000536 7.2e-06 55.1 96 37.5
BcaC05g30046 Brassica carinata HOM05D000563 ORTHO05D000536 7.2e-06 55.1 98 36.7
Carub.0006s1731 Capsella rubella HOM05D000563 ORTHO05D000536 7.2e-06 55.1 89 37.1
Glyma.19G153400 Glycine max HOM05D000563 ORTHO05D000536 7.2e-06 55.1 165 26.1
THA.LOC104824287 Tarenaya hassleriana HOM05D000563 ORTHO05D000536 7.2e-06 55.1 142 26.8
TWI23G0153 Tripterygium wilfordii HOM05D000563 ORTHO05D000536 7.2e-06 55.1 149 28.2
BraA03t10244Z Brassica rapa HOM05D000563 ORTHO05D000536 9.4e-06 54.7 149 28.2
CANSAT25G2118 Cannabis sativa HOM05D000563 ORTHO05D000536 9.4e-06 54.7 147 27.9
Cfa001423 Carpinus fangiana HOM05D000563 ORTHO05D000536 9.4e-06 54.7 91 36.3
CDE05G1176 Ceratophyllum demersum HOM05D000563 ORTHO05D000536 9.4e-06 54.7 151 27.8
Glyma.02G149600 Glycine max HOM05D000563 ORTHO05D000536 9.4e-06 54.7 186 25.8
Oeu014747.2 Olea europaea HOM05D000563 ORTHO05D000536 9.4e-06 54.7 103 35.0
Os07g0655300 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 9.4e-06 54.7 89 36.0
Peaxi162Scf00164g01413 Petunia axillaris HOM05D000563 ORTHO05D000536 9.4e-06 54.7 148 27.0


User provided reference genes

Program Settings