Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 3.0e-287 991.1 480 100.0
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 4.3e-262 907.5 461 93.5
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 3.1e-260 901.4 457 93.0
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 2.4e-244 848.6 475 84.4
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 4.2e-241 837.8 478 83.3
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 9.3e-241 836.6 480 82.9
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 7.9e-240 833.6 481 83.0
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 1.3e-239 832.8 481 82.5
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 5.1e-239 830.9 481 82.7
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 5.1e-239 830.9 480 82.5
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 1.9e-238 828.9 481 81.5
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 2.5e-238 828.6 480 82.7
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 7.4e-238 827.0 473 83.3
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 7.4e-238 827.0 479 80.6
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 2.1e-237 825.5 481 82.5
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.8e-237 825.1 484 82.2
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 2.8e-237 825.1 482 82.6
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 3.7e-237 824.7 486 80.7
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 6.2e-237 823.9 477 81.3
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 8.2e-237 823.5 479 80.4
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.4e-236 822.0 479 80.2
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 2.4e-236 822.0 488 80.9
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 5.3e-236 820.8 479 81.6
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 6.9e-236 820.5 480 81.5
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 1.5e-235 819.3 478 81.4
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 1.5e-235 819.3 478 81.4
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 2.6e-235 818.5 480 80.8
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 2.6e-235 818.5 478 81.8
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 2.6e-235 818.5 480 81.7
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 4.5e-235 817.8 480 80.4
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 5.8e-235 817.4 492 80.3
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 7.6e-235 817.0 484 81.0
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 1.0e-234 816.6 479 81.6
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 2.2e-234 815.5 480 81.2
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 2.9e-234 815.1 480 81.9
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 2.9e-234 815.1 479 81.0
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 2.9e-234 815.1 478 81.0
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 4.9e-234 814.3 479 81.0
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 1.2e-232 809.7 475 81.5
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 1.6e-232 809.3 481 80.2
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 2.1e-232 808.9 481 80.2
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 3.5e-232 808.1 480 79.4
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 4.6e-232 807.7 446 84.5
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 1.0e-231 806.6 481 79.6
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 1.3e-231 806.2 470 80.2
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 1.8e-231 805.8 470 80.4
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 1.8e-231 805.8 475 79.8
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 2.3e-231 805.4 481 79.6
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 2.3e-231 805.4 460 82.0
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 3.0e-231 805.1 441 84.6
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 3.0e-231 805.1 475 79.8
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 3.9e-231 804.7 475 80.0
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 5.1e-231 804.3 475 80.8
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 5.1e-231 804.3 476 80.0
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 6.7e-231 803.9 476 80.3
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 1.5e-230 802.7 479 79.7
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 2.5e-230 802.0 480 78.5
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 4.3e-230 801.2 479 79.7
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 5.7e-230 800.8 475 80.6
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 2.2e-229 798.9 475 78.7
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 2.8e-229 798.5 479 79.5
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 3.7e-229 798.1 480 78.5
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 4.8e-229 797.7 470 79.1
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 4.8e-229 797.7 470 79.6
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 6.3e-229 797.3 481 79.0
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 8.2e-229 797.0 475 78.1
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 8.2e-229 797.0 480 78.8
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 8.2e-229 797.0 484 78.3
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 1.1e-228 796.6 481 78.4
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 1.1e-228 796.6 476 81.1
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 1.1e-228 796.6 475 78.9
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 1.4e-228 796.2 470 78.9
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 1.4e-228 796.2 481 78.6
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 1.4e-228 796.2 475 79.8
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 1.8e-228 795.8 480 78.8
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 2.4e-228 795.4 473 78.4
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 2.4e-228 795.4 476 78.6
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 2.4e-228 795.4 481 78.0
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 5.3e-228 794.3 475 78.7
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 5.3e-228 794.3 475 77.7
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 9.0e-228 793.5 475 78.9
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 1.5e-227 792.7 461 80.5
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 2.0e-227 792.3 475 78.5
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 2.6e-227 792.0 460 80.4
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 1.0e-226 790.0 470 78.7
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 1.3e-226 789.6 478 77.0
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 1.7e-226 789.3 480 78.8
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 2.2e-226 788.9 478 77.6
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 2.9e-226 788.5 475 78.9
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 3.8e-226 788.1 482 76.3
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 5.0e-226 787.7 481 77.8
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 6.5e-226 787.3 481 79.0
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 1.4e-225 786.2 479 78.7
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 1.4e-225 786.2 476 78.8
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 1.9e-225 785.8 481 79.0
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 7.2e-225 783.9 493 77.9
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 1.6e-224 782.7 475 78.9
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 1.1e-220 770.0 473 78.2
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 6.1e-216 754.2 479 74.7
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 2.0e-214 749.2 500 73.0
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 7.4e-214 747.3 501 73.9
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 2.9e-210 735.3 480 74.8
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 3.8e-210 734.9 483 73.7
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 1.4e-209 733.0 463 72.8
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 6.7e-207 724.2 471 72.6
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 6.7e-207 724.2 455 76.7
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 3.1e-204 715.3 473 71.5
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 4.5e-203 711.4 508 71.1
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 3.2e-201 705.3 468 70.1
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 1.0e-199 700.3 478 71.5
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 1.0e-194 683.7 499 69.1
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 2.9e-186 655.6 386 80.1
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 1.5e-182 643.3 461 68.5
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 3.9e-178 628.6 474 66.7
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 3.7e-173 612.1 371 76.5
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 3.0e-170 602.4 371 75.7
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 1.2e-166 590.5 455 64.4
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 7.8e-163 577.8 304 89.1
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 1.5e-161 573.5 480 61.7
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 2.7e-155 552.7 304 86.2
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.9e-145 520.0 420 63.1
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 2.8e-144 516.2 410 62.0
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 6.9e-143 511.5 468 54.5
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 3.6e-136 489.2 281 81.1
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 4.8e-136 488.8 308 77.6
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 2.4e-135 486.5 275 82.2
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 1.1e-119 434.5 308 69.5
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.6e-107 394.0 250 74.0
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 2.6e-102 376.7 228 76.8
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 2.6e-102 376.7 228 76.8
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 1.3e-101 374.4 211 83.4
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 1.3e-93 347.8 408 47.3
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 1.1e-89 334.7 200 80.0
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 1.1e-84 318.2 465 42.6
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 2.3e-74 283.9 429 42.0
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 3.7e-72 276.6 151 81.5
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 2.2e-64 250.8 182 66.5
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 1.4e-63 248.1 182 65.9
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 5.6e-60 236.1 173 65.9
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 9.5e-60 235.3 177 64.4
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 8.3e-48 195.7 98 87.8
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 8.3e-48 195.7 98 87.8
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 1.1e-42 178.7 111 73.9
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.2e-38 165.2 105 71.4
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 7.3e-36 156.0 95 82.1
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 8.1e-35 152.5 97 73.2
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 1.4e-31 141.7 83 78.3
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 6.0e-30 136.3 86 75.6
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 9.6e-28 129.0 76 77.6
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 1.6e-22 111.7 56 91.1
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 2.1e-22 111.3 66 75.8
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 1.1e-20 105.5 133 42.1
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 1.1e-20 105.5 82 70.7
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.1e-20 105.5 82 70.7
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 1.2e-14 85.5 45 82.2
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 8.7e-13 79.3 66 62.1
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 1.9e-12 78.2 77 51.9
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 1.1e-10 72.4 48 72.9
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 2.4e-10 71.2 34 85.3
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 8.4e-08 62.8 34 85.3
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 3.2e-07 60.8 64 54.7
MBI04_g12481_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D243036 6.0e-06 56.6 32 78.1
BcaC01g06358 Brassica carinata HOM05D004186 ORTHO05D011383 7.9e-06 56.2 62 50.0


User provided reference genes

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