Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0669000 Oryza sativa ssp. japonica HOM05D002009 ORTHO05D006831 1.6e-79 299.3 147 100.0
Zm00001eb330170 Zea mays HOM05D002009 ORTHO05D006831 1.5e-61 239.6 145 80.0
Manes.09G167800 Manihot esculenta HOM05D002009 ORTHO05D006831 6.3e-47 191.0 134 64.9
Haze_04184 Corylus avellana HOM05D002009 ORTHO05D006831 2.4e-46 189.1 129 66.7
FvH4_6g06120 Fragaria vesca HOM05D002009 ORTHO05D006831 4.1e-46 188.3 129 67.4
RcHm_v2.0_Chr3g0455131 Rosa chinensis HOM05D002009 ORTHO05D006831 4.1e-46 188.3 129 68.2
Lj9C89G5 Lonicera japonica HOM05D002009 ORTHO05D006831 2.0e-45 186.0 134 64.9
CsaV3_2G006490 Cucumis sativus L. HOM05D002009 ORTHO05D006831 4.5e-45 184.9 133 66.2
Lju1040C0G1 Lonicera japonica HOM05D002009 ORTHO05D006831 4.5e-45 184.9 134 64.9
Prupe.6G324000 Prunus persica HOM05D002009 ORTHO05D006831 4.5e-45 184.9 134 64.9
TWI36G1702 Tripterygium wilfordii HOM05D002009 ORTHO05D006831 5.9e-45 184.5 147 61.2
arahy.Tifrunner.gnm1.ann1.UY60S3 Arachis hypogaea HOM05D002009 ORTHO05D006831 1.3e-44 183.3 133 62.4
Sopen01g042760 Solanum pennellii HOM05D000208 ORTHO05D000130 1.3e-44 183.3 136 62.5
CANSAT54G3017 Cannabis sativa HOM05D002009 ORTHO05D006831 2.2e-44 182.6 133 65.4
CAN.G1034.31 Capsicum annuum HOM05D002009 ORTHO05D006831 2.2e-44 182.6 129 65.1
Potri.013G022200 Populus trichocarpa HOM05D002009 ORTHO05D006831 2.2e-44 182.6 141 58.2
CSS0006817 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D006831 3.8e-44 181.8 139 61.9
MSTRG.27991 Avicennia marina HOM05D002009 ORTHO05D006831 5.0e-44 181.4 139 64.7
CSS0012384 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D006831 6.5e-44 181.0 139 61.9
CiPaw.07G018700 Carya illinoinensis HOM05D002009 ORTHO05D006831 6.5e-44 181.0 143 58.7
Ciclev10003639m.g Citrus clementina HOM05D002009 ORTHO05D006831 6.5e-44 181.0 133 62.4
Phvul.006G091300 Phaseolus vulgaris HOM05D002009 ORTHO05D006831 1.1e-43 180.3 135 60.0
QL03p007751 Quercus lobata HOM05D002009 ORTHO05D006831 1.1e-43 180.3 133 63.9
Solyc01g099220.3 Solanum lycopersicum HOM05D002009 ORTHO05D006831 1.1e-43 180.3 135 62.2
Sopen01g042770 Solanum pennellii HOM05D002009 ORTHO05D006831 1.1e-43 180.3 135 62.2
Glyma.03G237200 Glycine max HOM05D002009 ORTHO05D006831 1.4e-43 179.9 133 61.7
Sed0001711 Sechium edule HOM05D002009 ORTHO05D006831 1.4e-43 179.9 133 63.9
QL03p007353 Quercus lobata HOM05D002009 ORTHO05D006831 1.9e-43 179.5 133 63.9
Ah.04g160310 Amaranthus hybridus HOM05D002009 ORTHO05D006831 2.5e-43 179.1 132 61.4
BolC6t38955H Brassica oleracea HOM05D002009 ORTHO05D006831 2.5e-43 179.1 132 62.1
Dinv40301 Davidia involucrata HOM05D002009 ORTHO05D006831 2.5e-43 179.1 133 63.2
TPR.G33207 Trifolium pratense HOM05D002009 ORTHO05D006831 2.5e-43 179.1 133 63.2
Gohir.A08G210100 Gossypium hirsutum HOM05D002009 ORTHO05D006831 3.2e-43 178.7 136 64.0
Sc09g0003130 Simmondsia chinensis HOM05D002009 ORTHO05D006831 3.2e-43 178.7 133 60.2
BcaB03g15362 Brassica carinata HOM05D002009 ORTHO05D006831 5.5e-43 177.9 131 64.9
Ca_05812_v3 Cicer arietinum L. HOM05D002009 ORTHO05D006831 5.5e-43 177.9 133 60.9
Thhalv10017996m.g Eutrema salsugineum HOM05D002009 ORTHO05D006831 5.5e-43 177.9 135 62.2
AL2G26100 Arabidopsis lyrata HOM05D002009 ORTHO05D006831 7.2e-43 177.6 146 61.0
BraA07t30876Z Brassica rapa HOM05D002009 ORTHO05D006831 9.4e-43 177.2 132 61.4
Lalb_Chr18g0045671 Lupinus albus HOM05D002009 ORTHO05D006831 9.4e-43 177.2 131 60.3
MD12G1217900 Malus domestica HOM05D002009 ORTHO05D006831 9.4e-43 177.2 129 62.8
Atru.chr2.372 Acer truncatum HOM05D002009 ORTHO05D006831 1.2e-42 176.8 133 60.9
ECA236G3568 Erigeron canadensis HOM05D002009 ORTHO05D006831 1.2e-42 176.8 139 60.4
AUR62000811 Chenopodium quinoa HOM05D002009 ORTHO05D006831 1.6e-42 176.4 133 60.9
HanXRQChr15g0469941 Helianthus annuus HOM05D002009 ORTHO05D006831 1.6e-42 176.4 133 59.4
Gorai.004G241000 Gossypium raimondii HOM05D002009 ORTHO05D006831 2.1e-42 176.0 137 64.2
Sp5g22500 Schrenkiella parvula HOM05D002009 ORTHO05D006831 2.1e-42 176.0 133 64.7
PSO170G1195 Papaver somniferum HOM05D002009 ORTHO05D006831 2.7e-42 175.6 137 58.4
TAR633G0909 Trochodendron aralioides HOM05D002009 ORTHO05D006831 2.7e-42 175.6 133 61.7
GSVIVG01000087001 Vitis vinifera HOM05D002009 ORTHO05D006831 2.7e-42 175.6 130 60.8
PSO210G3028 Papaver somniferum HOM05D002009 ORTHO05D006831 4.7e-42 174.9 133 59.4
Aa31LG2G11690 Aethionema arabicum HOM05D000208 ORTHO05D006831 6.1e-42 174.5 134 61.2
Cc02_g33310 Coffea canephora HOM05D002009 ORTHO05D006831 8.0e-42 174.1 136 61.0
AT1G67500 Arabidopsis thaliana HOM05D002009 ORTHO05D006831 1.8e-41 172.9 135 60.0
C06p38660 Brassica napus HOM05D002009 ORTHO05D006831 1.8e-41 172.9 131 60.3
Rhsim12G0060600 Rhododendron simsii HOM05D002009 ORTHO05D006831 2.3e-41 172.6 134 61.9
Aqoxy2G03070 Aquilegia oxysepala HOM05D002009 ORTHO05D006831 3.9e-41 171.8 135 60.7
FAN14G2713 Fragaria x ananassa HOM05D002009 ORTHO05D006831 3.9e-41 171.8 121 65.3
A07p32520 Brassica napus HOM05D002009 ORTHO05D006831 8.8e-41 170.6 131 59.5
Lsat_1_v5_gn_9_86800 Lactuca sativa HOM05D002009 ORTHO05D006831 8.8e-41 170.6 132 59.1
CARHR060080 Cardamine hirsuta HOM05D002009 ORTHO05D006831 2.6e-40 169.1 135 60.0
SGA_v2.0_scaffold80G25788 Striga asiatica HOM05D002009 ORTHO05D006831 3.3e-40 168.7 130 60.0
DCAR_001814 Daucus carota HOM05D002009 ORTHO05D006831 4.4e-40 168.3 131 59.5
Psat0s2197g0080 Pisum sativum HOM05D002009 ORTHO05D006831 4.4e-40 168.3 133 60.2
Medtr7g113380 Medicago truncatula HOM05D002009 ORTHO05D006831 5.7e-40 167.9 133 60.9
Carub.0002s1383 Capsella rubella HOM05D002009 ORTHO05D006831 9.7e-40 167.2 135 58.5
THA.LOC104823729 Tarenaya hassleriana HOM05D002009 ORTHO05D006831 2.8e-39 165.6 133 59.4
Thecc.05G301300 Theobroma cacao HOM05D002009 ORTHO05D006831 3.7e-39 165.2 144 60.4
ATR0706G256 Amborella trichopoda HOM05D002009 ORTHO05D006831 4.8e-39 164.9 137 59.1
vmacro04986 Vaccinium macrocarpon HOM05D002009 ORTHO05D006831 6.3e-39 164.5 133 58.6
FAN09G2733 Fragaria x ananassa HOM05D002009 ORTHO05D006831 1.1e-38 163.7 121 62.8
Sabra13G0024400 Salix brachista HOM05D002009 ORTHO05D006831 1.2e-37 160.2 119 59.7
Pp3c2_33440 Physcomitrium patens HOM05D002009 ORTHO05D006831 2.0e-37 159.5 152 51.3
Mapoly0082s0049 Marchantia polymorpha HOM05D002009 ORTHO05D006831 3.5e-37 158.7 143 51.7
SMO146G0384 Selaginella moellendorffii HOM05D002009 ORTHO05D006831 1.0e-36 157.1 131 57.3
Peaxi162Scf00037g00637 Petunia axillaris HOM05D002009 ORTHO05D006831 2.9e-36 155.6 150 54.0
AagrBONN_evm.TU.Sc2ySwM_362.1967 Anthoceros agrestis HOM05D002009 ORTHO05D006831 1.5e-35 153.3 141 51.1
Nn3g21358 Nelumbo nucifera HOM05D002009 ORTHO05D006831 1.0e-33 147.1 103 65.0
EL10Ac4g09368 Beta vulgaris HOM05D002009 ORTHO05D006831 2.3e-33 146.0 190 43.7
CBR_g26314 Chara braunii HOM05D002009 ORTHO05D006831 2.0e-32 142.9 129 49.6
ClCG02G015610 Citrullus lanatus HOM05D002009 ORTHO05D006831 2.6e-32 142.5 210 41.4
FAN05G0625 Fragaria x ananassa HOM05D002009 ORTHO05D006831 1.3e-31 140.2 126 54.8
arahy.Tifrunner.gnm1.ann1.V7WSHY Arachis hypogaea HOM05D002009 ORTHO05D006831 2.0e-29 132.9 94 61.7
Migut.N02062 Erythranthe guttata HOM05D002009 ORTHO05D006831 2.0e-29 132.9 103 59.2
Hund07076 Selenicereus undatus HOM05D002009 ORTHO05D006831 3.5e-29 132.1 111 52.3
MD05G1053400 Malus domestica HOM05D002009 ORTHO05D006831 7.2e-27 124.4 100 55.0
Cpa.g.sc48.67 Carica papaya HOM05D002009 ORTHO05D006831 6.1e-26 121.3 95 56.8
QL03p054350 Quercus lobata HOM05D003219 ORTHO05D005190 4.0e-25 118.6 94 61.7
AUR62005157 Chenopodium quinoa HOM05D002009 ORTHO05D006831 5.7e-24 114.8 134 49.3
Cre09.g387400 Chlamydomonas reinhardtii HOM05D002009 ORTHO05D006831 3.1e-22 109.0 172 33.7
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 1.1e-19 100.5 56 80.4
Atru.chr1.2931 Acer truncatum HOM05D002009 ORTHO05D006831 5.5e-19 98.2 58 70.7
Sabra11G0104600 Salix brachista HOM05D000080 ORTHO05D004954 2.8e-15 85.9 73 49.3
Sabra15G0077100 Salix brachista HOM05D002009 ORTHO05D006831 1.1e-14 84.0 63 55.6
Sabra04G0085200 Salix brachista HOM05D002009 ORTHO05D006831 7.0e-14 81.3 64 53.1
Lju1225A2T63 Lonicera japonica HOM05D002009 ORTHO05D036486 4.5e-13 78.6 84 48.8
HPP92_001324 Vanilla planifolia HOM05D002009 ORTHO05D006831 1.1e-11 73.9 55 65.5
Lju1225A0T4 Lonicera japonica HOM05D002009 ORTHO05D036486 3.3e-11 72.4 81 48.1
PRCOL_00003841 Prasinoderma coloniale HOM05D002009 ORTHO05D006831 6.1e-10 68.2 146 32.9
Lj9A88T63 Lonicera japonica HOM05D002009 ORTHO05D036486 3.4e-08 62.4 44 65.9
SEGI_14509 Sequoiadendron giganteum HOM05D002009 ORTHO05D006831 2.9e-07 59.3 59 45.8
Haze_26679 Corylus avellana HOM05D002009 ORTHO05D006831 6.4e-07 58.2 59 40.7
Sabra05G0106300 Salix brachista HOM05D000002 ORTHO05D000001 8.3e-07 57.8 29 79.3
Lj9A92T11 Lonicera japonica HOM05D001538 ORTHO05D006831 1.4e-06 57.0 66 48.5


User provided reference genes

Program Settings