Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 1.9e-115 419.1 199 100.0
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 4.6e-69 265.0 179 67.6
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 2.3e-60 236.1 188 58.0
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 4.2e-54 215.3 184 55.4
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 2.7e-53 212.6 187 55.6
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 2.6e-48 196.1 182 48.4
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 1.0e-47 194.1 182 47.8
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.0e-47 194.1 180 48.3
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 3.8e-47 192.2 182 47.3
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 8.5e-47 191.0 194 46.9
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 2.5e-46 189.5 182 47.3
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 2.5e-46 189.5 182 47.8
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 3.2e-46 189.1 182 47.3
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 5.5e-46 188.3 182 46.7
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 7.2e-46 188.0 182 47.3
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 7.2e-46 188.0 182 44.0
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 9.4e-46 187.6 182 47.8
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 2.1e-45 186.4 182 46.7
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 2.7e-45 186.0 178 48.9
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 4.7e-45 185.3 182 46.7
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 6.1e-45 184.9 185 45.9
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 8.0e-45 184.5 182 47.8
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 8.0e-45 184.5 182 45.1
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 1.0e-44 184.1 182 46.7
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.0e-44 184.1 184 47.8
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 1.0e-44 184.1 182 46.7
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.8e-44 183.3 182 47.8
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 1.8e-44 183.3 182 48.4
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 2.3e-44 183.0 182 45.6
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 2.3e-44 183.0 183 47.0
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 2.3e-44 183.0 182 46.2
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 3.0e-44 182.6 182 46.7
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 3.0e-44 182.6 185 45.4
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 4.0e-44 182.2 182 46.2
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 4.0e-44 182.2 190 46.8
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 5.2e-44 181.8 131 60.3
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 5.2e-44 181.8 182 46.7
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 5.2e-44 181.8 182 46.7
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 6.7e-44 181.4 182 46.2
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 6.7e-44 181.4 183 46.4
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 8.8e-44 181.0 184 45.7
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 1.2e-43 180.6 182 46.2
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 1.2e-43 180.6 182 44.0
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 1.5e-43 180.3 189 45.5
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 1.5e-43 180.3 182 48.9
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.5e-43 180.3 182 45.6
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.5e-43 180.3 182 46.2
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 2.0e-43 179.9 182 44.5
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 2.0e-43 179.9 182 45.6
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 2.0e-43 179.9 182 45.6
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 2.6e-43 179.5 189 46.0
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.6e-43 179.5 182 46.2
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 3.3e-43 179.1 189 45.0
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 3.3e-43 179.1 182 47.3
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 3.3e-43 179.1 183 45.9
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 4.4e-43 178.7 189 45.5
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 4.4e-43 178.7 185 45.9
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 4.4e-43 178.7 182 45.6
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 4.4e-43 178.7 183 45.9
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 5.7e-43 178.3 182 45.6
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 5.7e-43 178.3 182 45.6
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 5.7e-43 178.3 182 45.1
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 5.7e-43 178.3 183 46.4
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 5.7e-43 178.3 182 46.7
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 5.7e-43 178.3 181 45.9
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 5.7e-43 178.3 182 46.2
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 7.5e-43 177.9 182 45.1
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 7.5e-43 177.9 182 44.5
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 7.5e-43 177.9 179 46.4
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 7.5e-43 177.9 182 45.6
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 9.7e-43 177.6 188 44.7
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 9.7e-43 177.6 182 46.7
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 1.7e-42 176.8 182 45.1
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.7e-42 176.8 182 45.6
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 1.7e-42 176.8 183 44.3
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 1.7e-42 176.8 185 43.8
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 1.7e-42 176.8 176 46.6
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 2.2e-42 176.4 189 45.5
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 2.2e-42 176.4 182 45.1
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 2.8e-42 176.0 182 44.5
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 2.8e-42 176.0 182 45.1
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 2.8e-42 176.0 182 45.1
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 2.8e-42 176.0 182 46.7
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 2.8e-42 176.0 182 45.6
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 2.8e-42 176.0 182 44.5
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 2.8e-42 176.0 182 45.1
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 3.7e-42 175.6 185 43.2
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 3.7e-42 175.6 182 45.1
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 6.3e-42 174.9 184 44.0
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 6.3e-42 174.9 184 44.0
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 6.3e-42 174.9 184 44.0
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 6.3e-42 174.9 182 45.6
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 8.2e-42 174.5 182 45.1
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 8.2e-42 174.5 182 45.1
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 1.1e-41 174.1 184 44.6
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 1.1e-41 174.1 186 44.1
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 1.4e-41 173.7 185 42.7
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 1.4e-41 173.7 177 44.6
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.8e-41 173.3 182 44.5
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 4.1e-41 172.2 182 45.6
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 5.3e-41 171.8 182 43.4
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 5.3e-41 171.8 182 45.6
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 1.2e-40 170.6 182 43.4
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 1.6e-40 170.2 182 44.0
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 2.0e-40 169.9 182 44.5
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 2.0e-40 169.9 182 42.9
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 2.7e-40 169.5 148 51.4
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.7e-40 169.5 182 45.1
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.5e-40 168.7 182 45.1
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 1.3e-39 167.2 202 41.6
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 2.2e-39 166.4 182 43.4
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 2.9e-39 166.0 155 50.3
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 5.0e-39 165.2 129 55.0
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 1.1e-38 164.1 184 44.6
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.5e-38 163.7 147 53.1
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 1.9e-38 163.3 182 41.8
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 3.2e-38 162.5 189 45.0
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 1.0e-36 157.5 281 32.4
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 4.4e-35 152.1 254 33.9
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.8e-34 149.4 173 40.5
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 1.4e-33 147.1 183 41.5
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 7.0e-33 144.8 183 41.0
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 2.0e-32 143.3 97 58.8
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.7e-32 142.9 182 37.9
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 3.5e-32 142.5 182 39.0
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 1.3e-31 140.6 155 41.9
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 2.2e-31 139.8 155 42.6
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 5.0e-31 138.7 183 38.3
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 5.0e-31 138.7 191 36.6
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 1.5e-30 137.1 155 38.7
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 2.5e-30 136.3 185 36.2
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 1.6e-29 133.7 185 40.0
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 1.6e-29 133.7 193 34.7
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 2.8e-29 132.9 155 41.9
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 5.2e-28 128.6 94 55.3
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 4.4e-27 125.6 92 54.3
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 9.8e-27 124.4 136 41.2
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 1.7e-26 123.6 182 35.2
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 2.8e-26 122.9 182 33.5
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 4.9e-26 122.1 183 36.1
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 1.4e-25 120.6 185 35.7
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 9.2e-25 117.9 136 40.4
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 7.8e-24 114.8 84 58.3
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 7.8e-24 114.8 147 44.2
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 1.7e-23 113.6 131 40.5
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 2.3e-23 113.2 84 57.1
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 1.4e-20 104.0 134 36.6
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 4.0e-20 102.4 70 55.7
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 7.5e-19 98.2 96 49.0
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 2.9e-18 96.3 186 33.9
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 1.1e-17 94.4 96 47.9
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 1.1e-17 94.4 96 47.9
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 1.8e-17 93.6 182 31.3
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 5.4e-17 92.0 207 28.5
Zm00001eb329620 Zea mays HOM05D004775 ORTHO05D005351 1.7e-15 87.0 94 47.9
CARHR222170 Cardamine hirsuta HOM05D006348 ORTHO05D008261 1.4e-12 77.4 164 28.7
AL7G40130 Arabidopsis lyrata HOM05D006348 ORTHO05D008261 4.0e-12 75.9 151 28.5
AT4G15420 Arabidopsis thaliana HOM05D006348 ORTHO05D008261 4.0e-12 75.9 164 28.0
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 1.5e-11 73.9 153 29.4
Aa31LG9G2030 Aethionema arabicum HOM05D006348 ORTHO05D008261 3.4e-11 72.8 151 29.8
unitig_26.g9928 Utricularia gibba HOM05D006348 ORTHO05D008261 1.3e-10 70.9 153 26.1
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 1.1e-09 67.8 55 52.7
FvH4_6g42660 Fragaria vesca HOM05D006348 ORTHO05D008261 7.8e-08 61.6 153 24.8
FAN02G0418 Fragaria x ananassa HOM05D006348 ORTHO05D008261 7.8e-08 61.6 153 24.8
FAN14G5544 Fragaria x ananassa HOM05D006348 ORTHO05D008261 7.8e-08 61.6 153 24.8
FAN09G4439 Fragaria x ananassa HOM05D006348 ORTHO05D008261 1.7e-07 60.5 153 24.8
MBI15_g39225_MAGBIO Magnolia biondii HOM05D022081 ORTHO05D005351 1.5e-06 57.4 42 57.1


User provided reference genes

Program Settings