Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 8.4e-210 733.4 364 100.0
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 1.5e-190 669.5 365 91.0
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 7.2e-177 624.0 364 83.2
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 2.1e-176 622.5 360 83.9
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 8.2e-165 583.9 368 77.4
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 1.4e-164 583.2 365 78.4
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 1.8e-164 582.8 365 78.4
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 2.4e-164 582.4 360 79.7
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 4.1e-164 581.6 367 77.4
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 1.6e-163 579.7 364 78.3
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.1e-161 573.5 365 76.4
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 1.5e-161 573.2 366 77.0
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 3.2e-161 572.0 368 76.6
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 4.2e-161 571.6 368 77.4
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 7.2e-161 570.9 364 76.9
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 9.4e-161 570.5 366 77.0
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.2e-160 570.1 365 77.8
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.2e-160 570.1 366 77.3
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 2.1e-160 569.3 366 77.0
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 3.6e-160 568.5 365 77.0
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.0e-159 567.0 365 75.6
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 1.4e-159 566.6 366 76.2
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 2.3e-159 565.8 364 75.8
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 2.3e-159 565.8 362 77.3
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 3.0e-159 565.5 366 76.2
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 4.0e-159 565.1 367 75.5
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 4.0e-159 565.1 365 75.9
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 4.0e-159 565.1 364 75.8
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 4.0e-159 565.1 366 77.0
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 5.2e-159 564.7 366 76.2
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 8.8e-159 563.9 366 75.7
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 8.8e-159 563.9 360 76.4
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 1.2e-158 563.5 365 75.9
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 1.2e-158 563.5 366 76.5
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 1.2e-158 563.5 366 77.3
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 2.0e-158 562.8 367 75.7
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 2.0e-158 562.8 365 76.4
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 2.0e-158 562.8 367 75.7
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 2.6e-158 562.4 362 77.1
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 2.6e-158 562.4 361 76.5
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 3.4e-158 562.0 364 76.9
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 4.4e-158 561.6 366 76.0
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 5.7e-158 561.2 362 75.4
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 5.7e-158 561.2 366 75.1
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 9.8e-158 560.5 365 75.6
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 1.7e-157 559.7 367 74.1
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 2.8e-157 558.9 364 75.3
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 2.8e-157 558.9 366 74.9
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 3.7e-157 558.5 366 74.9
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 3.7e-157 558.5 367 74.9
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 3.7e-157 558.5 379 73.6
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 4.8e-157 558.1 365 75.3
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 4.8e-157 558.1 368 73.9
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 6.3e-157 557.8 368 73.6
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 8.3e-157 557.4 367 74.7
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 8.3e-157 557.4 367 75.2
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 8.3e-157 557.4 366 75.7
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 8.3e-157 557.4 366 75.7
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 8.3e-157 557.4 365 75.3
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 8.3e-157 557.4 368 73.6
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 8.3e-157 557.4 367 75.7
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 1.1e-156 557.0 366 74.9
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 1.4e-156 556.6 367 74.9
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 1.4e-156 556.6 364 74.7
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 1.4e-156 556.6 368 75.8
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 1.8e-156 556.2 367 74.7
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 3.1e-156 555.4 367 74.1
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 3.1e-156 555.4 367 74.4
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 3.1e-156 555.4 366 74.3
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 3.1e-156 555.4 367 74.1
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 4.1e-156 555.1 371 74.1
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 5.4e-156 554.7 367 74.1
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 7.0e-156 554.3 366 74.6
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 7.0e-156 554.3 367 75.2
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 7.0e-156 554.3 392 71.4
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 9.1e-156 553.9 367 74.4
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 9.1e-156 553.9 367 74.4
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 2.7e-155 552.4 366 75.1
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 2.7e-155 552.4 367 74.4
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 2.7e-155 552.4 366 74.6
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 3.5e-155 552.0 405 69.4
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 3.5e-155 552.0 361 75.3
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 5.9e-155 551.2 366 74.0
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 5.9e-155 551.2 360 74.4
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 7.7e-155 550.8 365 75.3
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 1.0e-154 550.4 367 73.8
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.0e-154 550.4 366 73.8
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 1.3e-154 550.1 367 73.6
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.3e-154 550.1 366 73.8
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 1.7e-154 549.7 366 74.3
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 5.0e-154 548.1 367 73.6
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 5.0e-154 548.1 361 74.2
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 5.0e-154 548.1 378 72.2
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 5.0e-154 548.1 360 74.2
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.9e-153 546.2 363 73.6
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 2.5e-153 545.8 365 74.5
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 4.2e-153 545.0 367 73.8
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 5.5e-153 544.7 363 73.0
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 7.2e-153 544.3 368 73.1
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 9.5e-153 543.9 365 72.6
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 2.1e-152 542.7 365 74.0
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.1e-152 542.7 367 73.3
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 2.8e-152 542.3 398 69.3
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 3.6e-152 542.0 361 74.2
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 1.0e-151 540.4 361 73.1
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 2.3e-151 539.3 361 73.1
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 2.3e-151 539.3 361 73.1
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 2.3e-151 539.3 361 73.1
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 2.3e-151 539.3 361 73.1
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 2.3e-151 539.3 361 73.1
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 8.9e-151 537.3 365 73.7
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 8.9e-151 537.3 361 73.4
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 4.4e-150 535.0 370 71.1
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 5.7e-150 534.6 364 72.3
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 7.5e-150 534.3 370 70.8
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 9.8e-150 533.9 369 71.3
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 9.8e-150 533.9 362 73.8
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 2.8e-149 532.3 345 75.9
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 4.9e-149 531.6 430 65.3
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 6.3e-149 531.2 357 73.9
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 1.4e-148 530.0 350 73.4
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 1.8e-148 529.6 363 71.3
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 3.1e-148 528.9 353 74.5
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 2.0e-147 526.2 363 71.1
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 5.0e-146 521.5 363 73.0
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 5.0e-146 521.5 370 69.5
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 2.1e-144 516.2 365 73.2
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 6.1e-144 514.6 344 73.8
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 1.0e-143 513.8 364 72.8
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 1.5e-142 510.0 372 68.5
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 2.0e-142 509.6 364 69.0
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.6e-142 509.2 343 72.6
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 4.4e-142 508.4 361 70.6
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 1.3e-141 506.9 347 72.3
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 4.9e-141 505.0 364 65.4
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 1.2e-139 500.4 356 69.4
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 1.6e-139 500.0 346 72.5
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 6.0e-139 498.0 364 66.5
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 6.0e-139 498.0 363 66.4
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 6.0e-139 498.0 367 65.7
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 7.3e-137 491.1 370 68.4
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 2.8e-136 489.2 367 64.3
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 1.4e-135 486.9 390 64.9
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 1.8e-135 486.5 365 64.9
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 4.4e-134 481.9 364 63.7
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 1.3e-130 470.3 348 67.0
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 1.7e-125 453.4 276 81.2
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 1.0e-122 444.1 356 64.0
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 3.0e-122 442.6 284 75.4
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 1.2e-120 437.2 357 62.2
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 1.1e-119 434.1 326 68.1
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 1.8e-119 433.3 289 74.4
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 2.6e-118 429.5 377 56.5
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 1.4e-116 423.7 347 64.8
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 1.0e-114 417.5 364 55.5
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 5.1e-114 415.2 390 55.9
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 8.7e-114 414.5 331 63.4
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 2.5e-113 412.9 273 74.4
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 5.6e-113 411.8 278 73.0
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 9.6e-113 411.0 276 73.9
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 3.1e-111 406.0 274 72.3
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 2.6e-110 402.9 274 72.3
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 5.4e-108 395.2 364 53.8
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 1.7e-106 390.2 276 71.0
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 6.4e-101 371.7 290 63.8
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 9.3e-100 367.9 240 77.5
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 5.7e-81 305.4 222 69.4
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 1.5e-78 297.4 274 58.0
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 1.9e-76 290.4 177 79.7
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 5.1e-74 282.3 198 67.2
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.1e-71 274.6 194 70.6
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 6.5e-61 238.8 167 71.3
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 1.7e-53 214.2 261 50.2
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 7.2e-52 208.8 119 84.9
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 2.1e-51 207.2 147 74.8
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 1.4e-50 204.5 122 81.1
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 2.0e-46 190.7 371 32.3
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 9.4e-44 181.8 431 28.3
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 8.3e-40 168.7 113 75.2
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 4.1e-39 166.4 401 26.9
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 1.3e-32 144.8 302 31.1
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 3.1e-26 123.6 115 53.0
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 4.6e-22 109.8 77 66.2
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 6.4e-08 62.8 49 65.3
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 8.4e-08 62.4 60 55.0
Zm00001eb049370 Zea mays HOM05D003727 ORTHO05D441754 3.5e-06 57.0 32 84.4


User provided reference genes

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