Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0489000 Oryza sativa ssp. japonica HOM05D000489 ORTHO05D000372 1.6e-78 296.2 171 100.0
Zm00001eb327930 Zea mays HOM05D000489 ORTHO05D000372 1.5e-15 87.0 107 46.7
Zm00001eb109750 Zea mays HOM05D000489 ORTHO05D000372 2.5e-15 86.3 98 45.9
Os07g0625800 Oryza sativa ssp. japonica HOM05D000489 ORTHO05D000372 1.6e-14 83.6 135 39.3
Os03g0385400 Oryza sativa ssp. japonica HOM05D000489 ORTHO05D000372 4.8e-14 82.0 85 49.4
Zm00001eb334250 Zea mays HOM05D000489 ORTHO05D000372 2.0e-12 76.6 89 46.1
Os02g0286350 Oryza sativa ssp. japonica HOM05D000489 ORTHO05D000372 1.9e-10 70.1 77 46.8
Os03g0385100 Oryza sativa ssp. japonica HOM05D000489 ORTHO05D000372 2.5e-10 69.7 128 42.2
Prupe.1G512100 Prunus persica HOM05D000489 ORTHO05D000372 3.2e-10 69.3 105 38.1
Nn1g05279 Nelumbo nucifera HOM05D000489 ORTHO05D000372 4.2e-10 68.9 104 36.5
SEGI_32497 Sequoiadendron giganteum HOM05D000489 ORTHO05D000372 5.5e-10 68.6 111 36.9
Nn5g29038 Nelumbo nucifera HOM05D000489 ORTHO05D000372 7.9e-09 64.7 101 36.6
HPP92_004062 Vanilla planifolia HOM05D000489 ORTHO05D000372 7.9e-09 64.7 108 37.0
COL.COLO4_25284 Corchorus olitorius HOM05D000489 ORTHO05D000372 2.3e-08 63.2 144 31.9
Medtr2g008560 Medicago truncatula HOM05D000489 ORTHO05D000372 2.3e-08 63.2 107 34.6
Dinv09047 Davidia involucrata HOM05D000489 ORTHO05D000372 3.0e-08 62.8 103 34.0
Glyma.08G074100 Glycine max HOM05D000489 ORTHO05D000372 3.0e-08 62.8 121 30.6
TAR376G0535 Trochodendron aralioides HOM05D000489 ORTHO05D000372 3.0e-08 62.8 115 32.2
Actinidia00258 Actinidia chinensis HOM05D000489 ORTHO05D000372 3.9e-08 62.4 102 35.3
Ah.09g232010 Amaranthus hybridus HOM05D000489 ORTHO05D000372 3.9e-08 62.4 136 30.9
Cfa005629 Carpinus fangiana HOM05D000489 ORTHO05D000372 6.7e-08 61.6 102 36.3
CiPaw.13G128200 Carya illinoinensis HOM05D000489 ORTHO05D000372 6.7e-08 61.6 89 37.1
Dinv13041 Davidia involucrata HOM05D003397 ORTHO05D004390 6.7e-08 61.6 92 34.8
Lj5P241T33 Lonicera japonica HOM05D000489 ORTHO05D000372 6.7e-08 61.6 81 38.3
MBI02_g30886_MAGBIO Magnolia biondii HOM05D000489 ORTHO05D000372 6.7e-08 61.6 81 40.7
SEGI_17517 Sequoiadendron giganteum HOM05D000489 ORTHO05D000372 6.7e-08 61.6 146 33.6
TAR633G0728 Trochodendron aralioides HOM05D000489 ORTHO05D000372 6.7e-08 61.6 116 33.6
Lsat_1_v5_gn_7_81381 Lactuca sativa HOM05D000489 ORTHO05D000372 8.7e-08 61.2 83 34.9
Phvul.002G207400 Phaseolus vulgaris HOM05D000489 ORTHO05D000372 8.7e-08 61.2 103 31.1
SGA_v2.0_scaffold83G26283 Striga asiatica HOM05D000489 ORTHO05D000372 8.7e-08 61.2 105 35.2
Ca_18339_v3 Cicer arietinum L. HOM05D000489 ORTHO05D000372 1.1e-07 60.8 102 33.3
QL11p019810 Quercus lobata HOM05D000489 ORTHO05D000372 1.1e-07 60.8 106 34.0
CiPaw.06G152200 Carya illinoinensis HOM05D000489 ORTHO05D000372 1.5e-07 60.5 101 35.6
Dinv24208 Davidia involucrata HOM05D000489 ORTHO05D000372 1.5e-07 60.5 108 31.5
CSS0009034 Camellia sinensis var. sinensis HOM05D000489 ORTHO05D000372 1.9e-07 60.1 103 35.0
Lalb_Chr10g0097701 Lupinus albus HOM05D000489 ORTHO05D000372 1.9e-07 60.1 142 28.2
Lalb_Chr17g0340121 Lupinus albus HOM05D000489 ORTHO05D000372 1.9e-07 60.1 104 32.7
RcHm_v2.0_Chr7g0226231 Rosa chinensis HOM05D000489 ORTHO05D000372 1.9e-07 60.1 99 35.4
ECA236G4717 Erigeron canadensis HOM05D000489 ORTHO05D000372 2.5e-07 59.7 83 34.9
Thhalv10004996m.g Eutrema salsugineum HOM05D000489 ORTHO05D000372 3.3e-07 59.3 106 31.1
Glyma.05G119100 Glycine max HOM05D000489 ORTHO05D000372 3.3e-07 59.3 103 31.1
TPR.G5732 Trifolium pratense HOM05D000489 ORTHO05D000372 3.3e-07 59.3 105 32.4
VMungo0251G1568 Vigna mungo HOM05D000489 ORTHO05D000372 3.3e-07 59.3 100 33.0
Zm00001eb401230 Zea mays HOM05D000489 ORTHO05D000372 3.3e-07 59.3 107 37.4
Actinidia28063 Actinidia chinensis HOM05D000489 ORTHO05D000372 4.3e-07 58.9 102 32.4
Ciclev10029367m.g Citrus clementina HOM05D000489 ORTHO05D000372 4.3e-07 58.9 105 33.3
Haze_10639 Corylus avellana HOM05D000489 ORTHO05D000372 4.3e-07 58.9 107 33.6
TAR628G0745 Trochodendron aralioides HOM05D000489 ORTHO05D000372 4.3e-07 58.9 83 34.9
TAR628G1546 Trochodendron aralioides HOM05D000489 ORTHO05D000372 4.3e-07 58.9 83 34.9
vmacro01816 Vaccinium macrocarpon HOM05D000489 ORTHO05D000372 4.3e-07 58.9 113 31.9
Lalb_Chr18g0060591 Lupinus albus HOM05D000489 ORTHO05D000372 5.7e-07 58.5 83 33.7
Oeu000237.1 Olea europaea HOM05D000489 ORTHO05D000372 5.7e-07 58.5 105 31.4
SEGI_40082 Sequoiadendron giganteum HOM05D000489 ORTHO05D000372 5.7e-07 58.5 85 41.2
unitig_62.g23873 Utricularia gibba HOM05D000489 ORTHO05D000372 5.7e-07 58.5 106 38.7
Carub.0006s0791 Capsella rubella HOM05D000489 ORTHO05D000372 7.4e-07 58.2 86 34.9
Cpa.g.sc100.24 Carica papaya HOM05D000489 ORTHO05D000372 7.4e-07 58.2 83 36.1
Migut.B00627 Erythranthe guttata HOM05D000489 ORTHO05D000372 7.4e-07 58.2 102 32.4
SEGI_40524 Sequoiadendron giganteum HOM05D000489 ORTHO05D000372 7.4e-07 58.2 147 32.7
GSVIVG01029796001 Vitis vinifera HOM05D000489 ORTHO05D000372 7.4e-07 58.2 100 33.0
Ah.14g085460 Amaranthus hybridus HOM05D000489 ORTHO05D000372 9.7e-07 57.8 94 34.0
arahy.Tifrunner.gnm1.ann1.7W2D79 Arachis hypogaea HOM05D000489 ORTHO05D000372 9.7e-07 57.8 100 34.0
MSTRG.16571 Avicennia marina HOM05D000489 ORTHO05D000372 9.7e-07 57.8 88 31.8
AUR62027376 Chenopodium quinoa HOM05D000489 ORTHO05D000372 9.7e-07 57.8 93 37.6
AUR62031292 Chenopodium quinoa HOM05D000489 ORTHO05D000372 9.7e-07 57.8 93 37.6
Lalb_Chr20g0123091 Lupinus albus HOM05D000489 ORTHO05D000372 9.7e-07 57.8 104 28.8
Rhsim11G0135800 Rhododendron simsii HOM05D000489 ORTHO05D000372 9.7e-07 57.8 105 32.4
Thecc.08G111400 Theobroma cacao HOM05D000489 ORTHO05D000372 9.7e-07 57.8 92 35.9
C03p62190 Brassica napus HOM05D000489 ORTHO05D000372 1.3e-06 57.4 83 33.7
BolC3t18482H Brassica oleracea HOM05D000489 ORTHO05D000372 1.3e-06 57.4 83 33.7
CiPaw.05G038100 Carya illinoinensis HOM05D000489 ORTHO05D000372 1.3e-06 57.4 109 33.0
Nitab4.5_0002865g0080 Nicotiana tabacum HOM05D000489 ORTHO05D000372 1.3e-06 57.4 110 33.6
PSO541G5398 Papaver somniferum HOM05D000489 ORTHO05D000372 1.3e-06 57.4 102 29.4
BraA06t26021Z Brassica rapa HOM05D000489 ORTHO05D000372 1.6e-06 57.0 83 33.7
CSS0029345 Camellia sinensis var. sinensis HOM05D000489 ORTHO05D000372 1.6e-06 57.0 140 30.0
COL.COLO4_33856 Corchorus olitorius HOM05D000489 ORTHO05D000372 1.6e-06 57.0 105 32.4
Thhalv10022877m.g Eutrema salsugineum HOM05D000489 ORTHO05D000372 1.6e-06 57.0 149 29.5
Medtr2g008580 Medicago truncatula HOM05D000489 ORTHO05D000372 1.6e-06 57.0 84 35.7
Os05g0489200 Oryza sativa ssp. japonica HOM05D000489 ORTHO05D000372 1.6e-06 57.0 128 35.2
SEGI_00778 Sequoiadendron giganteum HOM05D000489 ORTHO05D000372 1.6e-06 57.0 143 32.2
SEGI_30746 Sequoiadendron giganteum HOM05D000489 ORTHO05D000372 1.6e-06 57.0 103 37.9
SGA_v2.0_scaffold191G40501 Striga asiatica HOM05D002644 ORTHO05D003267 1.6e-06 57.0 107 36.4
THA.LOC104818431 Tarenaya hassleriana HOM05D000489 ORTHO05D000372 1.6e-06 57.0 134 28.4
arahy.Tifrunner.gnm1.ann1.PI996E Arachis hypogaea HOM05D002060 ORTHO05D002098 2.2e-06 56.6 83 33.7
arahy.Tifrunner.gnm1.ann1.UVCD4T Arachis hypogaea HOM05D002060 ORTHO05D000372 2.2e-06 56.6 83 33.7
arahy.Tifrunner.gnm1.ann1.VY6T3Y Arachis hypogaea HOM05D002060 ORTHO05D000372 2.2e-06 56.6 83 33.7
CANSAT11G2140 Cannabis sativa HOM05D000489 ORTHO05D000372 2.2e-06 56.6 105 30.5
Migut.N01059 Erythranthe guttata HOM05D000489 ORTHO05D000372 2.2e-06 56.6 107 31.8
MD15G1411800 Malus domestica HOM05D000489 ORTHO05D000372 2.2e-06 56.6 107 33.6
Nitab4.5_0003434g0070 Nicotiana tabacum HOM05D000489 ORTHO05D000372 2.2e-06 56.6 108 33.3
arahy.Tifrunner.gnm1.ann1.PF0WST Arachis hypogaea HOM05D000489 ORTHO05D000372 2.8e-06 56.2 100 33.0
AUR62028597 Chenopodium quinoa HOM05D003852 ORTHO05D003095 2.8e-06 56.2 100 38.0
COL.COLO4_33864 Corchorus olitorius HOM05D000489 ORTHO05D000372 2.8e-06 56.2 105 32.4
Dinv31207 Davidia involucrata HOM05D000489 ORTHO05D000372 2.8e-06 56.2 102 33.3
PSO133G0081 Papaver somniferum HOM05D000489 ORTHO05D000372 2.8e-06 56.2 102 28.4
Peaxi162Scf00152g01116 Petunia axillaris HOM05D000489 ORTHO05D000372 2.8e-06 56.2 103 32.0
Prupe.1G558100 Prunus persica HOM05D000489 ORTHO05D000372 2.8e-06 56.2 83 33.7
Aa31LG1G17840 Aethionema arabicum HOM05D000489 ORTHO05D000372 3.7e-06 55.8 110 32.7
Cpa.g.sc66.89 Carica papaya HOM05D000489 ORTHO05D000372 3.7e-06 55.8 104 29.8
Cc02_g21750 Coffea canephora HOM05D000489 ORTHO05D000372 3.7e-06 55.8 111 28.8
Eucgr.B01056 Eucalyptus grandis HOM05D000489 ORTHO05D000372 3.7e-06 55.8 107 33.6
Os03g0192600 Oryza sativa ssp. japonica HOM05D000489 ORTHO05D000372 3.7e-06 55.8 91 36.3
Phvul.006G207500 Phaseolus vulgaris HOM05D000489 ORTHO05D000372 3.7e-06 55.8 104 33.7
Prupe.6G152000 Prunus persica HOM05D000489 ORTHO05D000372 3.7e-06 55.8 114 34.2
TWI53G0660 Tripterygium wilfordii HOM05D000489 ORTHO05D000372 3.7e-06 55.8 105 31.4
TAR381G0274 Trochodendron aralioides HOM05D000489 ORTHO05D000372 3.7e-06 55.8 113 31.0
arahy.Tifrunner.gnm1.ann1.282MDX Arachis hypogaea HOM05D002060 ORTHO05D000372 4.8e-06 55.5 83 33.7
BcaB02g09788 Brassica carinata HOM05D000489 ORTHO05D000372 4.8e-06 55.5 83 33.7
FAN13G3066 Fragaria x ananassa HOM05D000489 ORTHO05D000372 4.8e-06 55.5 102 31.4
Lalb_Chr09g0335101 Lupinus albus HOM05D000489 ORTHO05D000372 4.8e-06 55.5 109 33.9
Oeu007949.1 Olea europaea HOM05D000489 ORTHO05D000372 4.8e-06 55.5 111 33.3
SEGI_22696 Sequoiadendron giganteum HOM05D000489 ORTHO05D000372 4.8e-06 55.5 143 32.2
Atru.chr4.2436 Acer truncatum HOM05D000489 ORTHO05D000372 6.3e-06 55.1 114 31.6
Atru.ctg752_3.51 Acer truncatum HOM05D000489 ORTHO05D000372 6.3e-06 55.1 114 31.6
AT2G13820 Arabidopsis thaliana HOM05D000489 ORTHO05D000372 6.3e-06 55.1 147 29.9
FAN08G0017 Fragaria x ananassa HOM05D000489 ORTHO05D000372 6.3e-06 55.1 102 31.4
Sed0020787 Sechium edule HOM05D000489 ORTHO05D000372 6.3e-06 55.1 85 34.1
A06p30800 Brassica napus HOM05D000489 ORTHO05D000372 8.2e-06 54.7 83 32.5
ClCG09G015260 Citrullus lanatus HOM05D000489 ORTHO05D000372 8.2e-06 54.7 108 33.3
Duzib132G0082 Durio zibethinus HOM05D000489 ORTHO05D000372 8.2e-06 54.7 105 31.4
FvH4_5g30920 Fragaria vesca HOM05D000489 ORTHO05D000372 8.2e-06 54.7 151 29.1
FAN04G1703 Fragaria x ananassa HOM05D000489 ORTHO05D000372 8.2e-06 54.7 102 31.4
FAN18G0428 Fragaria x ananassa HOM05D000489 ORTHO05D000372 8.2e-06 54.7 151 29.1
HanXRQChr11g0336911 Helianthus annuus HOM05D000489 ORTHO05D000372 8.2e-06 54.7 145 27.6
Peaxi162Scf00001g10028 Petunia axillaris HOM05D000489 ORTHO05D000372 8.2e-06 54.7 113 33.6
QL06p001777 Quercus lobata HOM05D000489 ORTHO05D000372 8.2e-06 54.7 108 31.5


User provided reference genes

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