Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.8e-269 931.8 859 100.0
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 9.3e-66 256.1 210 60.0
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 3.5e-49 201.1 191 49.7
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 4.6e-49 200.7 191 50.8
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 8.7e-48 196.4 191 48.7
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 2.5e-47 194.9 192 52.1
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 3.3e-47 194.5 191 49.2
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 9.7e-47 193.0 194 48.5
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.6e-46 192.2 202 47.5
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 3.1e-45 188.0 191 50.3
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.1e-45 187.6 188 48.4
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 9.0e-45 186.4 192 47.4
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 2.0e-44 185.3 192 47.4
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 2.0e-44 185.3 190 47.4
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 5.9e-44 183.7 188 49.5
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 1.0e-43 183.0 189 47.6
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.3e-43 182.6 188 47.9
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.3e-43 182.6 189 48.1
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 1.3e-43 182.6 191 47.1
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.7e-43 182.2 197 45.2
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.2e-43 181.8 188 47.3
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 2.2e-43 181.8 188 48.9
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 2.9e-43 181.4 191 47.6
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 2.9e-43 181.4 194 45.9
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.8e-43 181.0 197 45.2
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 3.8e-43 181.0 194 46.4
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 5.0e-43 180.6 192 47.4
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 6.5e-43 180.3 192 47.4
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 6.5e-43 180.3 191 48.7
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 6.5e-43 180.3 192 46.4
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 2.5e-42 178.3 192 45.8
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 5.5e-42 177.2 189 46.0
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 1.2e-41 176.0 191 46.1
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 1.2e-41 176.0 176 50.0
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 2.7e-41 174.9 189 47.1
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 3.6e-41 174.5 193 48.2
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 3.6e-41 174.5 187 44.9
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 4.6e-41 174.1 195 45.6
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 4.6e-41 174.1 188 46.8
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 4.6e-41 174.1 189 47.1
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.1e-41 173.7 188 45.7
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 1.0e-40 172.9 195 44.6
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 1.0e-40 172.9 191 46.6
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.8e-40 172.2 192 43.8
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.3e-40 171.8 179 49.7
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 3.9e-40 171.0 195 45.6
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 5.1e-40 170.6 193 45.1
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 5.1e-40 170.6 190 45.3
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.7e-40 170.2 194 44.8
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 6.7e-40 170.2 190 45.3
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 8.8e-40 169.9 190 45.8
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 1.1e-39 169.5 194 45.4
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 2.0e-39 168.7 191 43.5
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 2.0e-39 168.7 192 43.8
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 2.0e-39 168.7 189 43.4
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.5e-39 168.3 191 44.0
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 2.5e-39 168.3 191 44.5
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.3e-39 167.9 192 44.3
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 4.3e-39 167.5 175 49.1
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 4.3e-39 167.5 189 45.0
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 5.7e-39 167.2 192 44.3
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 5.7e-39 167.2 196 42.9
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 5.7e-39 167.2 196 42.9
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 9.7e-39 166.4 192 43.8
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 9.7e-39 166.4 239 38.9
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.3e-38 166.0 184 44.0
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 2.2e-38 165.2 187 42.8
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 4.8e-38 164.1 191 44.0
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 6.3e-38 163.7 189 45.5
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 8.2e-38 163.3 190 43.2
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.1e-37 162.9 190 44.7
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.4e-37 162.5 142 54.2
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 1.8e-37 162.2 189 40.2
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.8e-37 162.2 189 44.4
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.8e-37 162.2 194 42.8
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 2.4e-37 161.8 191 39.8
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 2.4e-37 161.8 200 44.0
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 3.1e-37 161.4 189 40.2
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 4.1e-37 161.0 193 44.0
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.3e-37 160.6 194 42.3
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 6.9e-37 160.2 175 45.7
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 6.9e-37 160.2 186 43.0
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 9.1e-37 159.8 195 43.1
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 1.2e-36 159.5 189 40.2
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 1.5e-36 159.1 192 39.6
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.5e-36 159.1 202 39.1
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.5e-36 159.1 200 39.5
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.0e-36 158.7 192 42.2
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 2.0e-36 158.7 184 44.6
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.0e-36 158.7 190 41.1
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 2.6e-36 158.3 173 42.2
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 3.4e-36 157.9 187 40.6
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 3.4e-36 157.9 191 40.3
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 3.4e-36 157.9 199 39.2
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 3.4e-36 157.9 187 41.2
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 3.4e-36 157.9 193 41.5
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 4.5e-36 157.5 189 43.9
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 4.5e-36 157.5 191 42.9
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 4.5e-36 157.5 191 41.9
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 5.9e-36 157.1 191 42.9
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 7.7e-36 156.8 188 41.5
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 7.7e-36 156.8 190 43.7
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 1.3e-35 156.0 174 46.0
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 1.3e-35 156.0 190 44.2
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.9e-35 154.8 196 42.3
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 2.9e-35 154.8 192 39.1
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.9e-35 154.8 175 44.0
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 3.8e-35 154.5 174 45.4
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.1e-34 152.9 193 39.4
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 1.4e-34 152.5 174 45.4
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.4e-34 152.5 190 41.6
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.9e-34 152.1 191 44.5
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.9e-34 152.1 181 44.2
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 4.2e-34 151.0 187 40.6
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 4.2e-34 151.0 177 41.8
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 5.5e-34 150.6 189 39.2
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 5.5e-34 150.6 145 49.0
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 2.7e-33 148.3 191 37.7
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 3.6e-33 147.9 195 40.0
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 4.7e-33 147.5 175 44.6
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 6.1e-33 147.1 177 44.6
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 7.9e-33 146.7 193 37.8
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.4e-32 146.0 190 40.5
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 3.0e-32 144.8 191 40.3
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 3.9e-32 144.4 191 38.2
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 3.9e-32 144.4 188 41.5
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 5.1e-32 144.1 191 37.2
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 5.1e-32 144.1 191 38.2
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 5.1e-32 144.1 172 43.6
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 8.8e-32 143.3 191 37.2
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.1e-31 142.9 195 38.5
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.5e-31 142.5 156 44.9
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 7.4e-31 140.2 190 38.9
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 7.4e-31 140.2 177 44.1
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 9.7e-31 139.8 189 39.2
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 1.3e-30 139.4 191 37.2
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.7e-30 139.0 169 42.6
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.7e-30 139.0 191 39.3
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 2.2e-30 138.7 191 37.7
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.2e-30 138.7 182 37.9
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 8.2e-30 136.7 136 53.7
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-29 136.3 191 36.6
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 1.8e-29 135.6 189 36.0
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 3.1e-29 134.8 192 37.0
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 9.1e-29 133.3 170 40.6
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.2e-28 132.9 137 49.6
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 7.7e-28 130.2 189 36.0
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 2.9e-27 128.3 189 37.6
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 3.8e-27 127.9 169 37.3
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 5.5e-26 124.0 161 41.6
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 1.2e-25 122.9 192 39.6
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 2.1e-25 122.1 175 38.9
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 3.6e-25 121.3 143 42.7
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.0e-24 119.8 194 33.5
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 1.3e-22 112.8 195 35.4
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 3.7e-22 111.3 126 40.5
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.4e-21 109.4 161 36.6
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 3.1e-21 108.2 166 39.8
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 5.3e-21 107.5 149 36.2
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 5.9e-20 104.0 130 39.2
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 8.5e-19 100.1 140 35.7
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.1e-17 95.5 198 31.3
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.7e-17 94.4 157 36.9
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 8.8e-16 90.1 108 46.3
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 1.5e-15 89.4 111 38.7
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 7.2e-10 70.5 179 31.8
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 2.1e-09 68.9 86 38.4
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 4.7e-09 67.8 96 40.6
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 4.0e-08 64.7 78 47.4
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 6.8e-08 63.9 220 26.4
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.2e-06 58.9 64 42.2


User provided reference genes

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