Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0205200 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 5.7e-38 160.6 92 100.0
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 2.6e-22 108.6 84 67.9
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 1.8e-12 75.9 84 48.8
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 1.8e-12 75.9 84 48.8
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 7.8e-11 70.5 84 46.4
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 1.0e-10 70.1 84 45.2
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 1.9e-09 65.9 84 44.0
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 4.3e-09 64.7 84 42.9
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 5.6e-09 64.3 91 42.9
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 5.6e-09 64.3 84 44.0
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 7.3e-09 63.9 89 53.9
Actinidia10512 Actinidia chinensis HOM05D004632 ORTHO05D005556 9.5e-09 63.5 86 43.0
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 1.6e-08 62.8 91 41.8
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 2.1e-08 62.4 84 42.9
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 2.8e-08 62.0 87 40.2
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 4.7e-08 61.2 86 44.2
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 4.7e-08 61.2 85 41.2
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 6.1e-08 60.8 86 39.5
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 6.1e-08 60.8 98 38.8
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 6.1e-08 60.8 84 42.9
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 8.0e-08 60.5 86 40.7
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 1.4e-07 59.7 96 36.5
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 1.8e-07 59.3 91 40.7
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 3.0e-07 58.5 88 36.4
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 3.0e-07 58.5 94 39.4
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 4.0e-07 58.2 92 38.0
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 4.0e-07 58.2 85 41.2
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 4.0e-07 58.2 84 41.7
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 4.0e-07 58.2 85 40.0
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 8.9e-07 57.0 89 41.6
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 1.2e-06 56.6 84 40.5
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 1.2e-06 56.6 82 37.8
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 1.2e-06 56.6 85 42.4
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 1.2e-06 56.6 85 42.4
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 1.2e-06 56.6 84 40.5
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 1.5e-06 56.2 89 46.1
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 2.0e-06 55.8 92 45.7
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 2.6e-06 55.5 85 38.8
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 2.6e-06 55.5 85 40.0
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 2.6e-06 55.5 85 40.0
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 2.6e-06 55.5 85 40.0
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 3.4e-06 55.1 84 36.9
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 3.4e-06 55.1 93 49.5
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 3.4e-06 55.1 85 40.0
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 3.4e-06 55.1 85 40.0
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 3.4e-06 55.1 88 38.6
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 4.4e-06 54.7 87 36.8
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 4.4e-06 54.7 90 50.0
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 4.4e-06 54.7 84 35.7
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 4.4e-06 54.7 85 36.5
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 4.4e-06 54.7 88 39.8
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 4.4e-06 54.7 84 38.1
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 5.7e-06 54.3 85 37.6
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 5.7e-06 54.3 86 39.5
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 5.7e-06 54.3 84 35.7
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 7.5e-06 53.9 89 34.8
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 7.5e-06 53.9 85 37.6
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 7.5e-06 53.9 86 43.0
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 7.5e-06 53.9 86 37.2
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 7.5e-06 53.9 91 46.2
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 7.5e-06 53.9 91 46.2
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 9.8e-06 53.5 88 37.5


User provided reference genes

Program Settings