Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0136800 Oryza sativa ssp. japonica HOM05D005181 ORTHO05D006086 3.8e-44 181.0 85 100.0
Zm00001eb299750 Zea mays HOM05D005181 ORTHO05D006086 1.6e-18 95.9 66 66.7
SGA_v2.0_scaffold168G38494 Striga asiatica HOM05D005181 ORTHO05D006086 8.7e-17 90.1 68 60.3
Cc04_g06620 Coffea canephora HOM05D002288 ORTHO05D002894 1.5e-16 89.4 68 58.8
TWI60G1411 Tripterygium wilfordii HOM05D005181 ORTHO05D006086 1.9e-16 89.0 66 60.6
PGR083G0229 Punica granatum HOM05D005181 ORTHO05D006086 2.5e-16 88.6 64 57.8
Sc06g0002030 Simmondsia chinensis HOM05D005181 ORTHO05D006086 4.3e-16 87.8 68 57.4
CsaV3_3G006700 Cucumis sativus L. HOM05D005181 ORTHO05D006086 5.7e-16 87.4 65 58.5
TAR622G0602 Trochodendron aralioides HOM05D005181 ORTHO05D006086 7.4e-16 87.0 68 57.4
COL.COLO4_21587 Corchorus olitorius HOM05D005181 ORTHO05D006086 9.7e-16 86.7 64 59.4
Migut.D01451 Erythranthe guttata HOM05D005181 ORTHO05D006086 9.7e-16 86.7 68 58.8
PSO541G5122 Papaver somniferum HOM05D005181 ORTHO05D006086 9.7e-16 86.7 66 54.5
ClCG05G014580 Citrullus lanatus HOM05D005181 ORTHO05D006086 1.3e-15 86.3 65 58.5
Sed0017978 Sechium edule HOM05D005181 ORTHO05D006086 1.3e-15 86.3 65 56.9
Nn4g24098 Nelumbo nucifera HOM05D005181 ORTHO05D006086 1.6e-15 85.9 64 59.4
Oeu040446.1 Olea europaea HOM05D005181 ORTHO05D006086 1.6e-15 85.9 64 57.8
PSO675G7584 Papaver somniferum HOM05D005181 ORTHO05D006086 1.6e-15 85.9 66 54.5
MELO3C016456.2 Cucumis melo HOM05D005181 ORTHO05D006086 2.2e-15 85.5 65 56.9
SalBow1G8605 Salvia bowleyana HOM05D005181 ORTHO05D006086 2.2e-15 85.5 68 52.9
TWI81G0236 Tripterygium wilfordii HOM05D005181 ORTHO05D006086 2.2e-15 85.5 66 57.6
CDE09G1365 Ceratophyllum demersum HOM05D005181 ORTHO05D006086 2.8e-15 85.1 64 59.4
MBI10_g07295_MAGBIO Magnolia biondii HOM05D005181 ORTHO05D006086 2.8e-15 85.1 66 57.6
vmacro09847 Vaccinium macrocarpon HOM05D005181 ORTHO05D006086 2.8e-15 85.1 68 55.9
vmacro17791 Vaccinium macrocarpon HOM05D005181 ORTHO05D006086 2.8e-15 85.1 68 55.9
HPP92_001896 Vanilla planifolia HOM05D005181 ORTHO05D006086 2.8e-15 85.1 66 59.1
Ciclev10007362m.g Citrus clementina HOM05D005181 ORTHO05D006086 3.7e-15 84.7 68 54.4
Dinv24641 Davidia involucrata HOM05D005181 ORTHO05D006086 3.7e-15 84.7 68 57.4
Duzib205G1340 Durio zibethinus HOM05D005181 ORTHO05D006086 3.7e-15 84.7 64 57.8
Sabra15G0055600 Salix brachista HOM05D005181 ORTHO05D006086 3.7e-15 84.7 64 57.8
Sabra15G0063200 Salix brachista HOM05D005181 ORTHO05D006086 3.7e-15 84.7 64 57.8
Eucgr.B00857 Eucalyptus grandis HOM05D005181 ORTHO05D006086 4.8e-15 84.3 64 56.2
Gohir.D12G268700 Gossypium hirsutum HOM05D005181 ORTHO05D006086 4.8e-15 84.3 64 57.8
Cfa019696 Carpinus fangiana HOM05D005181 ORTHO05D006086 6.3e-15 84.0 66 56.1
MD14G1233900 Malus domestica HOM05D005181 ORTHO05D006086 6.3e-15 84.0 68 55.9
GSVIVG01008395001 Vitis vinifera HOM05D002288 ORTHO05D006086 6.3e-15 84.0 68 55.9
Gohir.A12G268300 Gossypium hirsutum HOM05D005181 ORTHO05D006086 8.2e-15 83.6 64 56.2
unitig_736.g22463 Utricularia gibba HOM05D005181 ORTHO05D006086 8.2e-15 83.6 64 57.8
Atru.chr9.956 Acer truncatum HOM05D005181 ORTHO05D006086 1.1e-14 83.2 68 54.4
CSS0001327 Camellia sinensis var. sinensis HOM05D000119 ORTHO05D006086 1.1e-14 83.2 68 55.9
CiPaw.15G139300 Carya illinoinensis HOM05D005181 ORTHO05D006086 1.1e-14 83.2 64 56.2
Thecc.03G047800 Theobroma cacao HOM05D005181 ORTHO05D006086 1.1e-14 83.2 64 56.2
vmacro07281 Vaccinium macrocarpon HOM05D005181 ORTHO05D006086 1.1e-14 83.2 68 54.4
Cpa.g.sc3.430 Carica papaya HOM05D005181 ORTHO05D006086 1.4e-14 82.8 68 51.5
Actinidia37888 Actinidia chinensis HOM05D005181 ORTHO05D006086 1.8e-14 82.4 68 54.4
Manes.14G168800 Manihot esculenta HOM05D005181 ORTHO05D006086 1.8e-14 82.4 64 57.8
AT3G18100 Arabidopsis thaliana HOM05D005181 ORTHO05D006086 2.4e-14 82.0 64 56.2
Gorai.008G288900 Gossypium raimondii HOM05D005181 ORTHO05D006086 2.4e-14 82.0 64 56.2
Prupe.5G230100 Prunus persica HOM05D005181 ORTHO05D006086 2.4e-14 82.0 64 54.7
QL10p027571 Quercus lobata HOM05D005181 ORTHO05D006086 2.4e-14 82.0 64 59.4
FvH4_5g17070 Fragaria vesca HOM05D005181 ORTHO05D006086 4.1e-14 81.3 64 56.2
FAN18G0354 Fragaria x ananassa HOM05D005181 ORTHO05D006086 4.1e-14 81.3 64 56.2
Haze_18792 Corylus avellana HOM05D005181 ORTHO05D006086 5.3e-14 80.9 66 54.5
Hma1.2p1_0669F.1_g200310 Hydrangea macrophylla HOM05D005181 ORTHO05D006086 5.3e-14 80.9 68 57.4
CAN.G1129.29 Capsicum annuum HOM05D005181 ORTHO05D006086 9.0e-14 80.1 72 52.8
FAN04G2630 Fragaria x ananassa HOM05D005181 ORTHO05D006086 9.0e-14 80.1 64 56.2
FAN08G2561 Fragaria x ananassa HOM05D005181 ORTHO05D006086 9.0e-14 80.1 64 56.2
Potri.015G041500 Populus trichocarpa HOM05D005181 ORTHO05D006086 9.0e-14 80.1 64 54.7
Rhsim13G0100900 Rhododendron simsii HOM05D005181 ORTHO05D006086 9.0e-14 80.1 68 52.9
AL7G46060 Arabidopsis lyrata HOM05D005181 ORTHO05D006086 1.2e-13 79.7 64 54.7
Carub.0003s1783 Capsella rubella HOM05D005181 ORTHO05D006086 1.2e-13 79.7 58 58.6
Lj5A154G68 Lonicera japonica HOM05D005181 ORTHO05D006086 1.2e-13 79.7 68 52.9
arahy.Tifrunner.gnm1.ann1.UX5VDV Arachis hypogaea HOM05D005181 ORTHO05D006086 1.5e-13 79.3 68 54.4
FAN13G0793 Fragaria x ananassa HOM05D005181 ORTHO05D006086 1.5e-13 79.3 64 54.7
SEGI_11728 Sequoiadendron giganteum HOM05D005181 ORTHO05D006086 1.5e-13 79.3 66 54.5
PGSC0003DMG400005657 Solanum tuberosum HOM05D005181 ORTHO05D006086 1.5e-13 79.3 68 51.5
AL3G31260 Arabidopsis lyrata HOM05D005181 ORTHO05D006086 2.0e-13 79.0 64 53.1
arahy.Tifrunner.gnm1.ann1.QZK539 Arachis hypogaea HOM05D005181 ORTHO05D006086 2.0e-13 79.0 68 54.4
CANSAT80G0160 Cannabis sativa HOM05D005181 ORTHO05D006086 2.0e-13 79.0 62 56.5
CANSAT80G2311 Cannabis sativa HOM05D005181 ORTHO05D006086 2.0e-13 79.0 62 56.5
AUR62036514 Chenopodium quinoa HOM05D005181 ORTHO05D006086 2.6e-13 78.6 68 54.4
Sopen03g037940 Solanum pennellii HOM05D005181 ORTHO05D006086 2.6e-13 78.6 68 51.5
A05p31690 Brassica napus HOM05D005181 ORTHO05D006086 3.4e-13 78.2 58 58.6
BraA05t22002Z Brassica rapa HOM05D005181 ORTHO05D006086 3.4e-13 78.2 58 58.6
AUR62037061 Chenopodium quinoa HOM05D005181 ORTHO05D006086 3.4e-13 78.2 68 52.9
Lj2g0017806 Lotus japonicus HOM05D005181 ORTHO05D006086 4.5e-13 77.8 64 54.7
Nitab4.5_0012734g0010 Nicotiana tabacum HOM05D005181 ORTHO05D006086 5.9e-13 77.4 68 52.9
Phvul.004G151600 Phaseolus vulgaris HOM05D005181 ORTHO05D006086 5.9e-13 77.4 68 54.4
Sp3g16220 Schrenkiella parvula HOM05D005181 ORTHO05D006086 5.9e-13 77.4 58 58.6
Solyc03g119050.4 Solanum lycopersicum HOM05D005181 ORTHO05D006086 5.9e-13 77.4 68 50.0
Aqoxy3G00439 Aquilegia oxysepala HOM05D005181 ORTHO05D006086 7.7e-13 77.0 66 50.0
Lsat_1_v5_gn_8_145621 Lactuca sativa HOM05D005181 ORTHO05D006086 7.7e-13 77.0 68 51.5
Nitab4.5_0001158g0050 Nicotiana tabacum HOM05D005181 ORTHO05D006086 7.7e-13 77.0 68 51.5
Psat1g033720 Pisum sativum HOM05D005181 ORTHO05D006086 7.7e-13 77.0 68 52.9
C05p48090 Brassica napus HOM05D005181 ORTHO05D006086 1.0e-12 76.6 58 56.9
Aqoxy3G03966 Aquilegia oxysepala HOM05D005181 ORTHO05D006086 1.3e-12 76.3 66 51.5
AL7G34390 Arabidopsis lyrata HOM05D005181 ORTHO05D006086 1.3e-12 76.3 57 59.6
Carub.0007s2150 Capsella rubella HOM05D005181 ORTHO05D006086 1.7e-12 75.9 57 57.9
Peaxi162Scf00683g00242 Petunia axillaris HOM05D005181 ORTHO05D006086 1.7e-12 75.9 68 51.5
BolC5t33518H Brassica oleracea HOM05D005181 ORTHO05D006086 2.9e-12 75.1 58 56.9
Aa31LG8G4950 Aethionema arabicum HOM05D005181 ORTHO05D006086 3.8e-12 74.7 64 50.0
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 3.8e-12 74.7 64 50.0
VMungo0251G3066 Vigna mungo HOM05D001910 ORTHO05D006086 3.8e-12 74.7 68 51.5
A01p11570 Brassica napus HOM05D005181 ORTHO05D006086 5.0e-12 74.3 57 56.1
Glyma.09G178000 Glycine max HOM05D005181 ORTHO05D006086 5.0e-12 74.3 64 53.1
BolC1t01339H Brassica oleracea HOM05D005181 ORTHO05D006086 6.5e-12 73.9 57 56.1
RcHm_v2.0_Chr7g0178781 Rosa chinensis HOM05D005181 ORTHO05D006086 6.5e-12 73.9 61 54.1
Glyma.07G100700 Glycine max HOM05D005181 ORTHO05D006086 8.5e-12 73.6 64 53.1
Medtr6g080360 Medicago truncatula HOM05D005181 ORTHO05D006086 1.1e-11 73.2 64 51.6
Phvul.003G004600 Phaseolus vulgaris HOM05D005181 ORTHO05D006086 1.1e-11 73.2 68 51.5
THA.LOC104821834 Tarenaya hassleriana HOM05D005181 ORTHO05D006086 1.1e-11 73.2 64 51.6
Ah.12g061970 Amaranthus hybridus HOM05D005181 ORTHO05D006086 1.4e-11 72.8 68 50.0
Thhalv10020020m.g Eutrema salsugineum HOM05D005181 ORTHO05D006086 1.4e-11 72.8 64 51.6
ECA233G2213 Erigeron canadensis HOM05D005181 ORTHO05D006086 1.9e-11 72.4 68 45.6
BcaNung01760 Brassica carinata HOM05D005181 ORTHO05D006086 3.2e-11 71.6 57 54.4
BcaNung01761 Brassica carinata HOM05D005181 ORTHO05D006086 3.2e-11 71.6 57 52.6
BraA01t01105Z Brassica rapa HOM05D005181 ORTHO05D006086 3.2e-11 71.6 57 54.4
Lalb_Chr22g0353341 Lupinus albus HOM05D005181 ORTHO05D006086 5.5e-11 70.9 64 53.1
BcaC09g51390 Brassica carinata HOM05D005181 ORTHO05D006086 7.2e-11 70.5 57 52.6
C01p13650 Brassica napus HOM05D005181 ORTHO05D006086 7.2e-11 70.5 57 52.6
RcHm_v2.0_Chr7g0230201 Rosa chinensis HOM05D005181 ORTHO05D006086 9.4e-11 70.1 68 51.5
Sp7g18220 Schrenkiella parvula HOM05D005181 ORTHO05D006086 9.4e-11 70.1 57 56.1
HanXRQChr07g0206911 Helianthus annuus HOM05D005181 ORTHO05D006086 1.6e-10 69.3 68 45.6
HanXRQChr05g0140931 Helianthus annuus HOM05D005181 ORTHO05D006086 2.1e-10 68.9 68 45.6
TPR.G14603 Trifolium pratense HOM05D005181 ORTHO05D006086 2.1e-10 68.9 68 48.5
Pp3c13_8880 Physcomitrium patens HOM05D005181 ORTHO05D006086 8.8e-09 63.5 64 50.0
Mapoly0061s0069 Marchantia polymorpha HOM05D005181 ORTHO05D006086 2.5e-08 62.0 64 45.3
SMO356G0228 Selaginella moellendorffii HOM05D000119 ORTHO05D006086 1.3e-07 59.7 63 42.9
TPR.G21383 Trifolium pratense HOM05D005181 ORTHO05D006086 6.3e-07 57.4 45 53.3
CBR_g2811 Chara braunii HOM05D000119 ORTHO05D006086 5.3e-06 54.3 64 40.6


User provided reference genes

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