Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 0.0e+00 1233.4 623 100.0
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 3.1e-252 875.2 627 73.2
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 3.4e-158 562.8 641 47.9
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 2.9e-157 559.7 635 49.6
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 9.2e-156 554.7 633 47.4
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 5.0e-154 548.9 638 48.6
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 7.3e-153 545.0 641 47.6
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 4.7e-152 542.3 644 46.0
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 1.4e-151 540.8 624 47.6
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 4.4e-150 535.8 641 47.6
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 2.2e-149 533.5 652 46.6
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 4.9e-149 532.3 642 47.8
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 4.6e-147 525.8 637 45.8
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 3.9e-146 522.7 620 47.9
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 2.5e-145 520.0 658 46.0
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 9.5e-145 518.1 634 46.1
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 2.8e-144 516.5 629 46.6
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 3.6e-144 516.2 668 44.5
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 6.2e-144 515.4 589 48.2
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.8e-143 513.8 620 47.3
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 4.0e-143 512.7 626 47.1
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 8.9e-143 511.5 633 47.9
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 4.4e-142 509.2 638 44.8
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 1.3e-141 507.7 617 45.1
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 4.9e-141 505.8 640 43.6
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 8.3e-141 505.0 636 44.8
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 5.4e-140 502.3 619 45.4
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 2.1e-139 500.4 620 45.5
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 1.7e-138 497.3 633 45.5
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 2.3e-138 496.9 646 44.4
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 8.6e-138 495.0 624 46.5
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 1.9e-137 493.8 670 44.6
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.5e-137 493.4 640 43.4
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 7.3e-137 491.9 640 43.3
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 2.1e-136 490.3 624 45.2
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 3.6e-136 489.6 623 45.4
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 4.7e-136 489.2 637 44.0
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 6.2e-136 488.8 601 47.1
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 2.3e-135 486.9 650 43.8
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 3.1e-135 486.5 645 44.7
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.6e-134 483.4 614 44.8
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 2.6e-134 483.4 640 43.9
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 5.8e-134 482.3 564 47.0
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 5.8e-134 482.3 618 44.7
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 5.8e-134 482.3 636 46.1
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 1.7e-133 480.7 637 44.6
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 2.2e-133 480.3 594 45.3
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 4.9e-133 479.2 618 44.5
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 8.4e-133 478.4 585 45.3
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 1.2e-131 474.6 539 47.1
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 1.2e-131 474.6 630 44.8
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 3.5e-131 473.0 603 45.3
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 3.9e-130 469.5 636 43.9
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.5e-129 467.6 614 44.1
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 1.5e-129 467.6 666 42.8
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 1.5e-129 467.6 536 48.3
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 3.3e-129 466.5 620 43.7
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 3.3e-129 466.5 523 47.2
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 1.2e-128 464.5 636 43.4
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 6.2e-128 462.2 620 43.1
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 6.2e-128 462.2 619 42.3
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 1.1e-127 461.5 640 42.2
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 8.9e-127 458.4 635 41.1
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 1.5e-126 457.6 651 43.8
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 2.0e-126 457.2 702 39.5
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 2.6e-126 456.8 619 43.3
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 3.4e-126 456.4 589 46.0
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 5.8e-126 455.7 739 38.0
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 1.3e-125 454.5 723 38.3
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 1.1e-124 451.4 733 38.3
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 1.9e-124 450.7 620 43.5
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.9e-124 450.7 621 43.3
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 2.4e-124 450.3 631 42.8
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 4.2e-124 449.5 612 43.0
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 7.1e-124 448.7 587 44.6
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 9.3e-124 448.4 634 43.7
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 9.3e-124 448.4 614 42.7
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 9.3e-124 448.4 537 46.4
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 1.2e-123 448.0 637 41.6
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 1.6e-123 447.6 617 42.8
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 4.6e-123 446.0 589 43.5
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 4.6e-123 446.0 589 43.5
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 6.0e-123 445.7 642 41.7
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 7.8e-123 445.3 616 43.3
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 1.0e-122 444.9 634 41.8
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 3.9e-122 443.0 599 44.1
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 8.7e-122 441.8 619 42.6
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 1.1e-121 441.4 634 42.0
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 1.1e-121 441.4 632 41.6
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 1.5e-121 441.0 520 45.8
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 1.9e-121 440.7 620 42.6
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 5.6e-121 439.1 617 42.8
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 7.3e-121 438.7 635 41.6
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 9.6e-121 438.3 602 41.5
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 1.3e-120 438.0 613 43.4
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 1.3e-120 438.0 689 39.5
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 4.8e-120 436.0 620 42.3
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.8e-119 434.1 573 44.5
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 4.0e-119 433.0 645 40.0
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 5.3e-119 432.6 628 41.2
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 9.0e-119 431.8 619 41.7
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.6e-118 430.3 621 43.0
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 2.6e-118 430.3 616 41.2
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 3.4e-118 429.9 619 41.7
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 1.3e-117 427.9 629 40.9
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 6.4e-117 425.6 711 37.8
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 6.4e-117 425.6 616 40.9
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 1.9e-116 424.1 641 40.1
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 2.4e-116 423.7 618 39.8
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 9.3e-116 421.8 556 43.9
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 1.2e-115 421.4 579 43.2
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 2.8e-112 410.2 630 40.8
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 1.4e-111 407.9 639 41.3
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 6.9e-111 405.6 640 41.4
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 4.5e-110 402.9 638 40.4
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 9.9e-110 401.7 589 40.4
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 1.7e-109 401.0 640 40.9
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 8.4e-109 398.7 640 39.1
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.1e-107 394.0 651 40.4
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 1.0e-106 391.7 622 40.5
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 2.3e-106 390.6 577 39.9
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.0e-106 390.2 659 39.9
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 3.9e-106 389.8 517 43.1
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 1.5e-105 387.9 623 40.1
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.5e-105 387.1 452 45.4
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 4.3e-105 386.3 619 39.6
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 5.6e-105 386.0 626 39.9
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 2.8e-104 383.6 553 41.8
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 2.4e-103 380.6 622 40.0
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 1.3e-101 374.8 433 48.0
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.2e-101 374.0 616 40.3
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 1.8e-98 364.4 580 40.0
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 6.7e-98 362.5 578 40.3
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 4.5e-94 349.7 616 37.2
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 2.2e-93 347.4 638 38.2
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 7.2e-92 342.4 569 37.8
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 1.6e-91 341.3 623 37.9
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 2.7e-91 340.5 617 35.5
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.5e-89 334.7 619 33.6
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.5e-89 334.7 619 33.6
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 3.4e-86 323.6 591 35.0
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 7.7e-78 295.8 443 40.9
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.8e-74 284.6 565 36.5
Actinidia20762 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.6e-73 280.8 298 51.3
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 2.6e-70 270.8 396 39.1
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 4.5e-70 270.0 523 33.5
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 5.0e-69 266.5 441 38.5
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 2.0e-62 244.6 320 42.5
DCAR_007550 Daucus carota HOM05D003539 ORTHO05D004111 9.4e-60 235.7 270 48.5
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.2e-57 228.8 341 42.2
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.7e-56 224.9 325 41.8
BolC4t27866H Brassica oleracea HOM05D003539 ORTHO05D004111 7.7e-54 216.1 257 47.5
SalBow7G0297 Salvia bowleyana HOM05D003539 ORTHO05D004111 2.5e-52 211.1 263 46.0
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.1e-51 208.0 369 38.8
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 3.0e-50 204.1 258 46.1
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 8.0e-43 179.5 342 36.5
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 3.0e-42 177.6 618 26.5
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 3.4e-41 174.1 279 37.3
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 1.2e-35 155.6 298 35.6
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 3.1e-34 151.0 546 24.5
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 1.1e-31 142.5 268 34.0
arahy.Tifrunner.gnm1.ann1.PJLZ8M Arachis hypogaea HOM05D003539 ORTHO05D004111 3.9e-29 134.0 148 50.7
CBR_g23267 Chara braunii HOM05D000019 ORTHO05D000048 3.9e-29 134.0 189 38.6
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 9.5e-28 129.4 327 31.2
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.2e-27 129.0 160 41.2
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 4.7e-27 127.1 201 39.8
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 1.2e-25 122.5 191 37.7
Cfa022324 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.9e-23 115.2 510 24.5
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 9.2e-23 112.8 178 40.4
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 2.0e-17 95.1 113 45.1
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 2.9e-16 91.3 195 32.8
MCO15G598 Micromonas commoda HOM05D003539 ORTHO05D004111 8.4e-16 89.7 655 21.8
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 3.0e-13 81.3 157 33.1
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 3.9e-13 80.9 78 48.7
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 5.6e-12 77.0 104 37.5
C03p59690 Brassica napus HOM05D003539 ORTHO05D004111 1.2e-11 75.9 165 33.9
BolC3t18231H Brassica oleracea HOM05D003539 ORTHO05D004111 1.2e-11 75.9 165 33.9
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 1.4e-10 72.4 181 29.3
Medtr8g085920 Medicago truncatula HOM05D003539 ORTHO05D004111 3.2e-07 61.2 90 41.1
Potri.007G065101 Populus trichocarpa HOM05D003539 ORTHO05D004111 2.1e-06 58.5 178 28.1
Ciclev10010647m.g Citrus clementina HOM05D003539 ORTHO05D004111 3.5e-06 57.8 89 42.7
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 7.8e-06 56.6 145 26.9


User provided reference genes

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