Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0490000 Oryza sativa ssp. japonica HOM05D002539 ORTHO05D002876 2.5e-42 175.3 103 100.0
Zm00001eb233640 Zea mays HOM05D002539 ORTHO05D002876 7.8e-20 100.5 100 61.0
Os10g0183900 Oryza sativa ssp. japonica HOM05D002539 ORTHO05D002876 1.5e-18 96.3 101 70.3
Hund04764 Selenicereus undatus HOM05D002539 ORTHO05D002876 1.3e-14 83.2 99 49.5
Ah.02g112320 Amaranthus hybridus HOM05D002539 ORTHO05D002876 1.4e-13 79.7 99 48.5
Phvul.003G030300 Phaseolus vulgaris HOM05D002539 ORTHO05D002876 2.4e-13 79.0 99 49.5
SGA_v2.0_scaffold5G02884 Striga asiatica HOM05D002539 ORTHO05D002876 3.2e-13 78.6 99 47.5
unitig_37.g12524 Utricularia gibba HOM05D002539 ORTHO05D002876 4.2e-13 78.2 101 48.5
Aqoxy3G02771 Aquilegia oxysepala HOM05D002539 ORTHO05D002876 5.4e-13 77.8 99 47.5
Eucgr.H03223 Eucalyptus grandis HOM05D002539 ORTHO05D002876 5.4e-13 77.8 99 48.5
Phvul.008G161800 Phaseolus vulgaris HOM05D002539 ORTHO05D002876 5.4e-13 77.8 99 48.5
SHI07194 Sapria himalayana HOM05D002539 ORTHO05D002876 5.4e-13 77.8 99 46.5
Sc17g0000470 Simmondsia chinensis HOM05D002539 ORTHO05D002876 5.4e-13 77.8 99 47.5
EL10As5g23525 Beta vulgaris HOM05D002539 ORTHO05D002876 7.1e-13 77.4 99 46.5
AUR62024655 Chenopodium quinoa HOM05D002539 ORTHO05D002876 7.1e-13 77.4 99 46.5
AUR62024659 Chenopodium quinoa HOM05D002539 ORTHO05D002876 7.1e-13 77.4 99 46.5
Glyma.06G316500 Glycine max HOM05D002539 ORTHO05D002876 7.1e-13 77.4 99 47.5
VMungo1080G1512 Vigna mungo HOM05D002539 ORTHO05D002876 7.1e-13 77.4 99 48.5
arahy.Tifrunner.gnm1.ann1.E77Y9X Arachis hypogaea HOM05D002539 ORTHO05D002876 9.3e-13 77.0 99 45.5
arahy.Tifrunner.gnm1.ann1.VKDS2Z Arachis hypogaea HOM05D002539 ORTHO05D002876 9.3e-13 77.0 99 45.5
MSTRG.27944 Avicennia marina HOM05D002539 ORTHO05D002876 1.2e-12 76.6 101 46.5
MSTRG.5140 Avicennia marina HOM05D002539 ORTHO05D002876 1.2e-12 76.6 99 45.5
Carub.0004s3014 Capsella rubella HOM05D002539 ORTHO05D002876 1.2e-12 76.6 99 47.5
Gohir.D07G132600 Gossypium hirsutum HOM05D002539 ORTHO05D002876 1.2e-12 76.6 99 45.5
Gorai.001G144000 Gossypium raimondii HOM05D002539 ORTHO05D002876 1.2e-12 76.6 99 45.5
SGA_v2.0_scaffold37G14612 Striga asiatica HOM05D002539 ORTHO05D002876 1.2e-12 76.6 99 45.5
Cfa005804 Carpinus fangiana HOM05D002539 ORTHO05D002876 1.6e-12 76.3 99 48.5
CiPaw.08G089900 Carya illinoinensis HOM05D002539 ORTHO05D002876 1.6e-12 76.3 99 47.5
Haze_05036 Corylus avellana HOM05D002539 ORTHO05D002876 1.6e-12 76.3 99 48.5
VMungo0647G1023 Vigna mungo HOM05D002539 ORTHO05D002876 1.6e-12 76.3 99 47.5
CSS0002968 Camellia sinensis var. sinensis HOM05D002539 ORTHO05D002876 2.1e-12 75.9 101 46.5
Cc02_g34970 Coffea canephora HOM05D002539 ORTHO05D002876 2.1e-12 75.9 101 46.5
Migut.C00729 Erythranthe guttata HOM05D002539 ORTHO05D002876 2.1e-12 75.9 99 46.5
MBI18_g31675_MAGBIO Magnolia biondii HOM05D002539 ORTHO05D002876 2.1e-12 75.9 99 47.5
Medtr3g007750 Medicago truncatula HOM05D002539 ORTHO05D002876 2.1e-12 75.9 99 46.5
Potri.014G121200 Populus trichocarpa HOM05D002539 ORTHO05D002876 2.1e-12 75.9 99 47.5
Sabra14G0089800 Salix brachista HOM05D002539 ORTHO05D002876 2.1e-12 75.9 99 47.5
CANSAT78G0122 Cannabis sativa HOM05D002539 ORTHO05D002876 2.7e-12 75.5 99 47.5
Eucgr.K03428 Eucalyptus grandis HOM05D002539 ORTHO05D002876 2.7e-12 75.5 99 47.5
Thhalv10001522m.g Eutrema salsugineum HOM05D002539 ORTHO05D002876 2.7e-12 75.5 71 54.9
Glyma.06G315500 Glycine max HOM05D002539 ORTHO05D002876 2.7e-12 75.5 99 47.5
PGR119G2169 Punica granatum HOM05D002539 ORTHO05D002876 2.7e-12 75.5 99 46.5
THA.LOC104802156 Tarenaya hassleriana HOM05D002539 ORTHO05D002876 2.7e-12 75.5 99 47.5
TWI18G1220 Tripterygium wilfordii HOM05D002539 ORTHO05D002876 2.7e-12 75.5 99 45.5
Aa31LG1G28720 Aethionema arabicum HOM05D002539 ORTHO05D002876 3.5e-12 75.1 71 56.3
AT2G47420 Arabidopsis thaliana HOM05D002539 ORTHO05D002876 3.5e-12 75.1 71 56.3
BcaB01g03167 Brassica carinata HOM05D002539 ORTHO05D002876 3.5e-12 75.1 71 56.3
BcaB02g08773 Brassica carinata HOM05D002539 ORTHO05D002876 3.5e-12 75.1 71 56.3
BcaC01g05030 Brassica carinata HOM05D002539 ORTHO05D002876 3.5e-12 75.1 71 56.3
BcaC02g12577 Brassica carinata HOM05D002539 ORTHO05D002876 3.5e-12 75.1 71 56.3
A03p25960 Brassica napus HOM05D002539 ORTHO05D002876 3.5e-12 75.1 71 56.3
A05p00500 Brassica napus HOM05D002539 ORTHO05D002876 3.5e-12 75.1 71 56.3
C03p30960 Brassica napus HOM05D002539 ORTHO05D002876 3.5e-12 75.1 71 56.3
C04p00450 Brassica napus HOM05D002539 ORTHO05D002876 3.5e-12 75.1 71 56.3
BolC3t15447H Brassica oleracea HOM05D002539 ORTHO05D002876 3.5e-12 75.1 71 56.3
BraA03t11813Z Brassica rapa HOM05D002539 ORTHO05D002876 3.5e-12 75.1 71 56.3
BraA05t19048Z Brassica rapa HOM05D002539 ORTHO05D002876 3.5e-12 75.1 71 56.3
CAN.G1715.3 Capsicum annuum HOM05D002539 ORTHO05D002876 3.5e-12 75.1 99 47.5
Cpa.g.sc26.213 Carica papaya HOM05D002539 ORTHO05D002876 3.5e-12 75.1 71 56.3
FvH4_5g39320 Fragaria vesca HOM05D002539 ORTHO05D002876 3.5e-12 75.1 99 45.5
FAN08G2541 Fragaria x ananassa HOM05D002539 ORTHO05D002876 3.5e-12 75.1 99 45.5
FAN13G0855 Fragaria x ananassa HOM05D002539 ORTHO05D002876 3.5e-12 75.1 99 45.5
FAN18G4394 Fragaria x ananassa HOM05D002539 ORTHO05D002876 3.5e-12 75.1 99 45.5
Sp4g29370 Schrenkiella parvula HOM05D002539 ORTHO05D002876 3.5e-12 75.1 71 56.3
Thecc.01G312800 Theobroma cacao HOM05D002539 ORTHO05D002876 4.6e-12 74.7 99 45.5
AUR62011811 Chenopodium quinoa HOM05D002539 ORTHO05D002876 6.0e-12 74.3 99 45.5
ClCG06G009680 Citrullus lanatus HOM05D002539 ORTHO05D002876 6.0e-12 74.3 99 46.5
TPR.G1752 Trifolium pratense HOM05D002539 ORTHO05D002876 6.0e-12 74.3 99 44.4
Atru.chr5.1006 Acer truncatum HOM05D002539 ORTHO05D002876 7.8e-12 73.9 71 53.5
Actinidia12778 Actinidia chinensis HOM05D002539 ORTHO05D002876 7.8e-12 73.9 101 46.5
AL4G46980 Arabidopsis lyrata HOM05D002539 ORTHO05D002876 7.8e-12 73.9 71 54.9
Ciclev10020794m.g Citrus clementina HOM05D002539 ORTHO05D002876 7.8e-12 73.9 71 56.3
COL.COLO4_23237 Corchorus olitorius HOM05D002539 ORTHO05D002876 7.8e-12 73.9 71 53.5
Lj3g0026518 Lotus japonicus HOM05D002539 ORTHO05D002876 7.8e-12 73.9 99 44.4
Manes.01G227400 Manihot esculenta HOM05D002539 ORTHO05D002876 7.8e-12 73.9 99 45.5
Nitab4.5_0004873g0050 Nicotiana tabacum HOM05D002539 ORTHO05D002876 7.8e-12 73.9 99 45.5
SalBow1G4930 Salvia bowleyana HOM05D002539 ORTHO05D002876 7.8e-12 73.9 99 46.5
Sed0022259 Sechium edule HOM05D002539 ORTHO05D002876 7.8e-12 73.9 99 45.5
Solyc01g100430.3 Solanum lycopersicum HOM05D002539 ORTHO05D002876 7.8e-12 73.9 99 45.5
Sopen01g043950 Solanum pennellii HOM05D002539 ORTHO05D002876 7.8e-12 73.9 99 45.5
PGSC0003DMG400002773 Solanum tuberosum HOM05D002539 ORTHO05D002876 7.8e-12 73.9 99 45.5
CsaV3_1G045270 Cucumis sativus L. HOM05D002539 ORTHO05D002876 1.0e-11 73.6 99 46.5
Lalb_Chr19g0133121 Lupinus albus HOM05D002539 ORTHO05D002876 1.0e-11 73.6 99 45.5
Nitab4.5_0000368g0120 Nicotiana tabacum HOM05D002539 ORTHO05D002876 1.0e-11 73.6 99 44.4
Peaxi162Scf00916g00217 Petunia axillaris HOM05D002539 ORTHO05D002876 1.0e-11 73.6 99 46.5
TWI36G0273 Tripterygium wilfordii HOM05D002539 ORTHO05D002876 1.0e-11 73.6 104 45.2
CARHR142810 Cardamine hirsuta HOM05D002539 ORTHO05D002876 1.3e-11 73.2 99 44.4
ECA240G0639 Erigeron canadensis HOM05D002539 ORTHO05D002876 1.3e-11 73.2 71 54.9
Lj5A335G22 Lonicera japonica HOM05D002539 ORTHO05D002876 1.3e-11 73.2 99 44.4
PSO017G2058 Papaver somniferum HOM05D002539 ORTHO05D002876 1.3e-11 73.2 99 44.4
PSO017G3927 Papaver somniferum HOM05D002539 ORTHO05D002876 1.3e-11 73.2 99 44.4
PSO210G3830 Papaver somniferum HOM05D002539 ORTHO05D002876 1.3e-11 73.2 99 44.4
PSO478G5203 Papaver somniferum HOM05D002539 ORTHO05D002876 1.3e-11 73.2 99 44.4
GSVIVG01028116001 Vitis vinifera HOM05D002539 ORTHO05D002876 1.3e-11 73.2 101 46.5
ClCG11G015510 Citrullus lanatus HOM05D002539 ORTHO05D002876 1.7e-11 72.8 99 45.5
Oeu037028.1 Olea europaea HOM05D002539 ORTHO05D002876 1.7e-11 72.8 99 43.4
Psat1g054320 Pisum sativum HOM05D002539 ORTHO05D002876 1.7e-11 72.8 71 54.9
TAR374G1067 Trochodendron aralioides HOM05D002539 ORTHO05D002876 1.7e-11 72.8 99 45.5
MELO3C010154.2 Cucumis melo HOM05D002539 ORTHO05D002876 2.3e-11 72.4 99 45.5
Duzib133G1023 Durio zibethinus HOM05D002539 ORTHO05D002876 2.3e-11 72.4 99 43.4
HanXRQChr03g0083541 Helianthus annuus HOM05D002539 ORTHO05D002876 2.3e-11 72.4 101 46.5
HanXRQChr13g0415261 Helianthus annuus HOM05D002539 ORTHO05D002876 2.3e-11 72.4 101 46.5
Lsat_1_v5_gn_6_84020 Lactuca sativa HOM05D002539 ORTHO05D002876 2.3e-11 72.4 99 45.5
Lj3C881T4 Lonicera japonica HOM05D002539 ORTHO05D002876 2.3e-11 72.4 99 43.4
Rhsim05G0132200 Rhododendron simsii HOM05D002539 ORTHO05D002876 2.3e-11 72.4 99 43.4
RcHm_v2.0_Chr7g0241601 Rosa chinensis HOM05D002539 ORTHO05D002876 2.3e-11 72.4 101 45.5
DCAR_003645 Daucus carota HOM05D002539 ORTHO05D002876 3.0e-11 72.0 101 46.5
DCAR_025277 Daucus carota HOM05D002539 ORTHO05D002876 3.0e-11 72.0 101 46.5
Oeu039501.1 Olea europaea HOM05D002539 ORTHO05D002876 3.0e-11 72.0 71 52.1
SalBow6G4473 Salvia bowleyana HOM05D002539 ORTHO05D002876 3.0e-11 72.0 97 46.4
SEGI_09721 Sequoiadendron giganteum HOM05D002539 ORTHO05D002876 3.0e-11 72.0 99 47.5
Dinv24437 Davidia involucrata HOM05D002539 ORTHO05D002876 3.9e-11 71.6 101 44.6
Hma1.2p1_0008F-1.1_g005650 Hydrangea macrophylla HOM05D002539 ORTHO05D002876 3.9e-11 71.6 99 42.4
Carub.0007s3306 Capsella rubella HOM05D002539 ORTHO05D002876 5.1e-11 71.2 99 45.5
MD11G1314900 Malus domestica HOM05D002539 ORTHO05D002876 5.1e-11 71.2 99 45.5
Prupe.1G563800 Prunus persica HOM05D002539 ORTHO05D002876 6.6e-11 70.9 99 45.5
Prupe.8G271700 Prunus persica HOM05D002539 ORTHO05D002876 6.6e-11 70.9 99 45.5
vmacro19740 Vaccinium macrocarpon HOM05D002539 ORTHO05D002876 8.7e-11 70.5 99 42.4
vmacro19791 Vaccinium macrocarpon HOM05D002539 ORTHO05D002876 8.7e-11 70.5 99 42.4
Nn4g25605 Nelumbo nucifera HOM05D002539 ORTHO05D002876 1.1e-10 70.1 99 43.4
ATR0618G264 Amborella trichopoda HOM05D002539 ORTHO05D002876 1.9e-10 69.3 99 45.5
Ca_12846_v3 Cicer arietinum L. HOM05D002539 ORTHO05D002876 1.9e-10 69.3 99 43.4
Dinv24436 Davidia involucrata HOM05D002539 ORTHO05D002876 1.9e-10 69.3 99 42.4
Mapoly0016s0053 Marchantia polymorpha HOM05D002539 ORTHO05D002876 4.3e-10 68.2 99 45.5
SMO236G0014 Selaginella moellendorffii HOM05D002539 ORTHO05D002876 7.3e-10 67.4 74 52.7
PRCOL_00003372 Prasinoderma coloniale HOM05D002539 ORTHO05D002876 1.3e-09 66.6 70 54.3
Atru.chr1.3420 Acer truncatum HOM05D002539 ORTHO05D002876 2.1e-09 65.9 44 65.9
AagrBONN_evm.TU.Sc2ySwM_344.4657 Anthoceros agrestis HOM05D002539 ORTHO05D002876 3.6e-09 65.1 99 44.4
Aqoxy1G01529 Aquilegia oxysepala HOM05D002539 ORTHO05D002876 4.8e-09 64.7 72 48.6
CBR_g18976 Chara braunii HOM05D002539 ORTHO05D002876 8.1e-09 63.9 99 41.4
Pp3c3_34840 Physcomitrium patens HOM05D002539 ORTHO05D002876 8.1e-09 63.9 70 52.9
Cre01.g042900 Chlamydomonas reinhardtii HOM05D002539 ORTHO05D002876 1.1e-08 63.5 70 51.4
MCO14G176 Micromonas commoda HOM05D002539 ORTHO05D002876 1.1e-08 63.5 71 52.1
Aqoxy1G00903 Aquilegia oxysepala HOM05D002539 ORTHO05D002876 1.4e-08 63.2 72 45.8
Aqoxy6G01211 Aquilegia oxysepala HOM05D002539 ORTHO05D002876 4.0e-08 61.6 49 57.1
Nn1g09423 Nelumbo nucifera HOM05D002539 ORTHO05D002876 3.4e-07 58.5 44 61.4
Psat2g156680 Pisum sativum HOM05D002539 ORTHO05D002876 5.8e-07 57.8 45 57.8
TPR.G2384 Trifolium pratense HOM05D002539 ORTHO05D002876 9.9e-07 57.0 45 55.6
Ca_24886_v3 Cicer arietinum L. HOM05D002539 ORTHO05D002876 1.3e-06 56.6 45 55.6
SEGI_25022 Sequoiadendron giganteum HOM05D002539 ORTHO05D002876 1.3e-06 56.6 69 46.4
QL06p037339 Quercus lobata HOM05D002539 ORTHO05D002876 1.7e-06 56.2 37 70.3
VMungo1215G2249 Vigna mungo HOM05D002539 ORTHO05D002876 2.2e-06 55.8 41 61.0
CiPaw.08G144900 Carya illinoinensis HOM05D002539 ORTHO05D002876 3.8e-06 55.1 37 67.6
Dinv33578 Davidia involucrata HOM05D002539 ORTHO05D002876 3.8e-06 55.1 44 54.5
Prupe.7G163000 Prunus persica HOM05D002539 ORTHO05D002876 3.8e-06 55.1 43 58.1
Haze_03927 Corylus avellana HOM05D002539 ORTHO05D002876 4.9e-06 54.7 37 67.6
Medtr5g021210 Medicago truncatula HOM05D002539 ORTHO05D002876 4.9e-06 54.7 45 53.3
Atru.chr3.739 Acer truncatum HOM05D002539 ORTHO05D002876 6.4e-06 54.3 41 63.4
CSS0045783 Camellia sinensis var. sinensis HOM05D002539 ORTHO05D002876 6.4e-06 54.3 44 59.1
TAR628G0175 Trochodendron aralioides HOM05D002539 ORTHO05D002876 6.4e-06 54.3 44 54.5
Haze_26171 Corylus avellana HOM05D002539 ORTHO05D002876 8.4e-06 53.9 41 56.1
FAN23G2451 Fragaria x ananassa HOM05D002539 ORTHO05D002876 8.4e-06 53.9 37 67.6
RcHm_v2.0_Chr2g0100161 Rosa chinensis HOM05D002539 ORTHO05D002876 8.4e-06 53.9 47 55.3
Sed0016257 Sechium edule HOM05D002539 ORTHO05D002876 8.4e-06 53.9 39 61.5


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