Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0309200 Oryza sativa ssp. japonica HOM05D003198 ORTHO05D003716 4.0e-73 278.1 150 100.0
Zm00001eb381520 Zea mays HOM05D003198 ORTHO05D003716 5.4e-46 188.0 133 75.9
Nn1g03326 Nelumbo nucifera HOM05D003198 ORTHO05D003716 3.3e-27 125.6 135 46.7
CANSAT64G0645 Cannabis sativa HOM05D003198 ORTHO05D003716 6.2e-26 121.3 116 44.8
Haze_09751 Corylus avellana HOM05D003198 ORTHO05D000645 6.2e-26 121.3 116 50.0
TAR626G0152 Trochodendron aralioides HOM05D003198 ORTHO05D003716 6.2e-26 121.3 113 50.4
Sabra14G0122400 Salix brachista HOM05D003198 ORTHO05D003716 8.2e-26 120.9 133 45.9
Potri.014G160700 Populus trichocarpa HOM05D003198 ORTHO05D003716 1.1e-25 120.6 133 45.9
DCAR_021127 Daucus carota HOM05D003198 ORTHO05D003716 1.8e-25 119.8 135 48.1
Carub.0001s0421 Capsella rubella HOM05D003198 ORTHO05D003716 2.4e-25 119.4 131 46.6
CiPaw.03G274400 Carya illinoinensis HOM05D003198 ORTHO05D003716 2.4e-25 119.4 113 46.0
Dinv40799 Davidia involucrata HOM05D003198 ORTHO05D003716 2.4e-25 119.4 131 46.6
GSVIVG01030539001 Vitis vinifera HOM05D003198 ORTHO05D003716 2.4e-25 119.4 134 44.0
AL1G14700 Arabidopsis lyrata HOM05D003198 ORTHO05D003716 4.0e-25 118.6 120 46.7
Ciclev10014979m.g Citrus clementina HOM05D003198 ORTHO05D003716 4.0e-25 118.6 138 45.7
Thhalv10007436m.g Eutrema salsugineum HOM05D003198 ORTHO05D003716 4.0e-25 118.6 128 46.1
Cfa020272 Carpinus fangiana HOM05D003198 ORTHO05D003716 6.9e-25 117.9 133 46.6
Hma1.2p1_0133F.1_g060850 Hydrangea macrophylla HOM05D003198 ORTHO05D003716 9.0e-25 117.5 131 46.6
Sp1g03840 Schrenkiella parvula HOM05D003198 ORTHO05D003716 9.0e-25 117.5 113 48.7
Manes.12G056200 Manihot esculenta HOM05D003198 ORTHO05D003716 1.2e-24 117.1 141 45.4
A10p03410 Brassica napus HOM05D003198 ORTHO05D003716 1.5e-24 116.7 113 47.8
Nn1g07356 Nelumbo nucifera HOM05D003198 ORTHO05D003716 1.5e-24 116.7 133 44.4
Cfa014294 Carpinus fangiana HOM05D003198 ORTHO05D003716 2.0e-24 116.3 124 43.5
QL08p007660 Quercus lobata HOM05D003198 ORTHO05D003716 2.6e-24 115.9 138 44.9
BraA10t42617Z Brassica rapa HOM05D003198 ORTHO05D003716 3.4e-24 115.5 113 46.9
TWI36G1248 Tripterygium wilfordii HOM05D003198 ORTHO05D003716 4.5e-24 115.2 140 45.0
CARHR004380 Cardamine hirsuta HOM05D003198 ORTHO05D003716 7.6e-24 114.4 128 44.5
COL.COLO4_05388 Corchorus olitorius HOM05D003198 ORTHO05D003716 7.6e-24 114.4 114 48.2
FvH4_6g41770 Fragaria vesca HOM05D003198 ORTHO05D003716 1.0e-23 114.0 141 44.0
FAN02G1329 Fragaria x ananassa HOM05D003198 ORTHO05D003716 1.0e-23 114.0 141 43.3
FAN14G3592 Fragaria x ananassa HOM05D003198 ORTHO05D003716 1.0e-23 114.0 141 44.0
THA.LOC104816032 Tarenaya hassleriana HOM05D003198 ORTHO05D003716 1.0e-23 114.0 130 43.1
Duzib138G0118 Durio zibethinus HOM05D003198 ORTHO05D003716 1.3e-23 113.6 136 45.6
HPP92_015463 Vanilla planifolia HOM05D003198 ORTHO05D003716 1.3e-23 113.6 129 47.3
ATR1101G097 Amborella trichopoda HOM05D003198 ORTHO05D003716 1.7e-23 113.2 138 44.2
FAN05G5757 Fragaria x ananassa HOM05D003198 ORTHO05D003716 1.7e-23 113.2 141 43.3
Cpa.g.sc132.52 Carica papaya HOM05D003198 ORTHO05D003716 2.2e-23 112.8 122 43.4
QL08p029708 Quercus lobata HOM05D003198 ORTHO05D003716 2.2e-23 112.8 113 44.2
RcHm_v2.0_Chr2g0157551 Rosa chinensis HOM05D003198 ORTHO05D003716 2.2e-23 112.8 141 43.3
Prupe.3G206400 Prunus persica HOM05D003198 ORTHO05D003716 2.9e-23 112.5 116 45.7
QL08p007665 Quercus lobata HOM05D003198 ORTHO05D003716 2.9e-23 112.5 134 43.3
Aqoxy1G02847 Aquilegia oxysepala HOM05D003198 ORTHO05D003716 3.8e-23 112.1 136 41.9
BolC5t29095H Brassica oleracea HOM05D003198 ORTHO05D003716 3.8e-23 112.1 132 42.4
CsaV3_2G034360 Cucumis sativus L. HOM05D003198 ORTHO05D003716 3.8e-23 112.1 137 43.1
MD09G1117400 Malus domestica HOM05D003198 ORTHO05D003716 3.8e-23 112.1 116 44.8
PGR142G2700 Punica granatum HOM05D003198 ORTHO05D003716 3.8e-23 112.1 115 42.6
Glyma.14G051400 Glycine max HOM05D003198 ORTHO05D003716 6.5e-23 111.3 132 43.2
Aa31LG1G20050 Aethionema arabicum HOM05D003198 ORTHO05D003716 8.4e-23 110.9 128 43.8
C05p03130 Brassica napus HOM05D003198 ORTHO05D003716 8.4e-23 110.9 132 41.7
FvH4_3g23590 Fragaria vesca HOM05D003198 ORTHO05D003716 8.4e-23 110.9 136 45.6
MBI16_g42269_MAGBIO Magnolia biondii HOM05D003198 ORTHO05D003716 1.1e-22 110.5 117 45.3
Haze_12742 Corylus avellana HOM05D003198 ORTHO05D003716 1.9e-22 109.8 149 39.6
MELO3C019348.2 Cucumis melo HOM05D003198 ORTHO05D003716 1.9e-22 109.8 130 43.8
VMungo0647G1222 Vigna mungo HOM05D003198 ORTHO05D003716 1.9e-22 109.8 134 43.3
Actinidia09760 Actinidia chinensis HOM05D003198 ORTHO05D003716 2.5e-22 109.4 131 41.2
FAN21G2261 Fragaria x ananassa HOM05D003198 ORTHO05D003716 2.5e-22 109.4 136 44.9
RcHm_v2.0_Chr5g0041601 Rosa chinensis HOM05D003198 ORTHO05D003716 3.2e-22 109.0 126 45.2
CiPaw.11G195200 Carya illinoinensis HOM05D003198 ORTHO05D003716 4.2e-22 108.6 131 43.5
Cc05_g14360 Coffea canephora HOM05D003198 ORTHO05D003716 4.2e-22 108.6 131 42.7
Lj1A881T82 Lonicera japonica HOM05D003198 ORTHO05D003716 4.2e-22 108.6 141 42.6
PGR083G1857 Punica granatum HOM05D003198 ORTHO05D003716 4.2e-22 108.6 113 44.2
Rhsim06G0223900 Rhododendron simsii HOM05D003198 ORTHO05D003716 5.5e-22 108.2 131 44.3
TPR.G17694 Trifolium pratense HOM05D003198 ORTHO05D003716 7.1e-22 107.8 116 39.7
Prupe.4G224100 Prunus persica HOM05D003198 ORTHO05D003716 9.3e-22 107.5 113 46.0
Glyma.02G295500 Glycine max HOM05D003198 ORTHO05D003716 1.2e-21 107.1 130 43.8
vmacro22305 Vaccinium macrocarpon HOM05D003198 ORTHO05D003716 1.2e-21 107.1 136 44.1
Gohir.D11G158700 Gossypium hirsutum HOM05D003198 ORTHO05D003716 1.6e-21 106.7 114 45.6
Gorai.007G169100 Gossypium raimondii HOM05D003198 ORTHO05D003716 1.6e-21 106.7 114 45.6
vmacro12142 Vaccinium macrocarpon HOM05D003198 ORTHO05D003716 1.6e-21 106.7 136 41.2
CSS0000021 Camellia sinensis var. sinensis HOM05D003198 ORTHO05D003716 2.1e-21 106.3 133 39.1
MD03G1192700 Malus domestica HOM05D003198 ORTHO05D003716 2.1e-21 106.3 113 44.2
ClCG02G009680 Citrullus lanatus HOM05D003198 ORTHO05D003716 2.7e-21 105.9 143 39.9
vmacro22998 Vaccinium macrocarpon HOM05D003198 ORTHO05D003716 2.7e-21 105.9 136 43.4
FAN11G3493 Fragaria x ananassa HOM05D003198 ORTHO05D003716 3.5e-21 105.5 136 43.4
Sabra16G0236600 Salix brachista HOM05D003198 ORTHO05D003716 3.5e-21 105.5 136 44.9
SGA_v2.0_scaffold97G29135 Striga asiatica HOM05D003198 ORTHO05D003716 3.5e-21 105.5 139 41.7
Zm00001eb316440 Zea mays HOM05D003198 ORTHO05D003716 3.5e-21 105.5 132 43.2
arahy.Tifrunner.gnm1.ann1.9JEK37 Arachis hypogaea HOM05D003198 ORTHO05D003716 4.6e-21 105.1 113 44.2
DCAR_016646 Daucus carota HOM05D003198 ORTHO05D003716 4.6e-21 105.1 111 46.8
Eucgr.K00725 Eucalyptus grandis HOM05D003198 ORTHO05D003716 7.9e-21 104.4 132 40.9
Duzib268G1559 Durio zibethinus HOM05D003198 ORTHO05D003716 1.0e-20 104.0 126 42.1
CSS0018093 Camellia sinensis var. sinensis HOM05D003198 ORTHO05D003716 1.3e-20 103.6 133 38.3
Potri.001G358800 Populus trichocarpa HOM05D003198 ORTHO05D003716 1.8e-20 103.2 133 42.1
MSTRG.13001 Avicennia marina HOM05D003198 ORTHO05D003716 3.0e-20 102.4 128 41.4
Hma1.2p1_0036F.1_g023060 Hydrangea macrophylla HOM05D003198 ORTHO05D003716 3.0e-20 102.4 137 40.1
Medtr5g084690 Medicago truncatula HOM05D003198 ORTHO05D003716 3.0e-20 102.4 114 40.4
Oeu007993.1 Olea europaea HOM05D003198 ORTHO05D003716 3.0e-20 102.4 135 40.0
Sed0019099 Sechium edule HOM05D003198 ORTHO05D003716 3.0e-20 102.4 113 42.5
Hund23195 Selenicereus undatus HOM05D003198 ORTHO05D003716 3.0e-20 102.4 127 43.3
arahy.Tifrunner.gnm1.ann1.37WV86 Arachis hypogaea HOM05D003198 ORTHO05D003716 3.9e-20 102.1 139 41.0
arahy.Tifrunner.gnm1.ann1.39HZ5K Arachis hypogaea HOM05D003198 ORTHO05D003716 3.9e-20 102.1 131 41.2
arahy.Tifrunner.gnm1.ann1.8LWJ5G Arachis hypogaea HOM05D003198 ORTHO05D003716 5.1e-20 101.7 113 43.4
CSS0044172 Camellia sinensis var. sinensis HOM05D003198 ORTHO05D003716 6.7e-20 101.3 135 42.2
CSS0008016 Camellia sinensis var. sinensis HOM05D003198 ORTHO05D003716 8.7e-20 100.9 135 42.2
COL.COLO4_09742 Corchorus olitorius HOM05D003198 ORTHO05D003716 1.1e-19 100.5 137 40.1
Lsat_1_v5_gn_5_2701 Lactuca sativa HOM05D003198 ORTHO05D003716 1.1e-19 100.5 134 41.8
LjContig00029g0002987 Lotus japonicus HOM05D003198 ORTHO05D003716 1.1e-19 100.5 138 38.4
LjContig00272g0024308 Lotus japonicus HOM05D003198 ORTHO05D003716 1.1e-19 100.5 134 41.0
Psat2g027120 Pisum sativum HOM05D003198 ORTHO05D003716 1.5e-19 100.1 138 36.2
VMungo0647G1270 Vigna mungo HOM05D003198 ORTHO05D003716 1.5e-19 100.1 128 43.8
Medtr5g093980 Medicago truncatula HOM05D003198 ORTHO05D003716 1.9e-19 99.8 136 39.7
CANSAT11G0980 Cannabis sativa HOM05D003198 ORTHO05D003716 2.5e-19 99.4 136 41.9
Actinidia05057 Actinidia chinensis HOM05D003198 ORTHO05D003716 3.3e-19 99.0 129 40.3
Ca_06351_v3 Cicer arietinum L. HOM05D003198 ORTHO05D000645 3.3e-19 99.0 105 47.6
Gorai.013G157300 Gossypium raimondii HOM05D003198 ORTHO05D003716 3.3e-19 99.0 127 40.9
Os09g0482720 Oryza sativa ssp. japonica HOM05D003198 ORTHO05D003716 3.3e-19 99.0 117 43.6
Migut.H01790 Erythranthe guttata HOM05D003198 ORTHO05D003716 4.3e-19 98.6 130 41.5
Gohir.D13G140700 Gossypium hirsutum HOM05D003198 ORTHO05D003716 4.3e-19 98.6 127 40.9
LjContig00272g0019387 Lotus japonicus HOM05D003198 ORTHO05D003716 4.3e-19 98.6 134 40.3
Thecc.07G027500 Theobroma cacao HOM05D003198 ORTHO05D003716 4.3e-19 98.6 126 43.7
Phvul.008G273000 Phaseolus vulgaris HOM05D003198 ORTHO05D003716 7.4e-19 97.8 132 41.7
EL10Ac9g22786 Beta vulgaris HOM05D003198 ORTHO05D003716 9.7e-19 97.4 125 39.2
Ciclev10008119m.g Citrus clementina HOM05D003198 ORTHO05D003716 9.7e-19 97.4 134 40.3
CDE07G0032 Ceratophyllum demersum HOM05D003198 ORTHO05D003716 1.3e-18 97.1 117 41.0
VMungo0540G1357 Vigna mungo HOM05D003198 ORTHO05D003716 1.3e-18 97.1 113 42.5
Glyma.14G017900 Glycine max HOM05D003198 ORTHO05D003716 1.6e-18 96.7 129 42.6
Lalb_Chr10g0105481 Lupinus albus HOM05D003198 ORTHO05D003716 1.6e-18 96.7 134 38.8
Sc06g0009740 Simmondsia chinensis HOM05D003198 ORTHO05D003716 1.6e-18 96.7 126 41.3
Ah.01g001800 Amaranthus hybridus HOM05D003198 ORTHO05D007707 2.2e-18 96.3 110 41.8
arahy.Tifrunner.gnm1.ann1.EAF0L1 Arachis hypogaea HOM05D003198 ORTHO05D003716 2.2e-18 96.3 138 39.1
Ah.04g166180 Amaranthus hybridus HOM05D003198 ORTHO05D003716 2.8e-18 95.9 109 44.0
arahy.Tifrunner.gnm1.ann1.M5AJQH Arachis hypogaea HOM05D003198 ORTHO05D003716 2.8e-18 95.9 133 40.6
Lj6g0024812 Lotus japonicus HOM05D003198 ORTHO05D003716 3.7e-18 95.5 131 41.2
Nitab4.5_0011589g0020 Nicotiana tabacum HOM05D003198 ORTHO05D003716 3.7e-18 95.5 130 40.8
TPR.G30638 Trifolium pratense HOM05D003198 ORTHO05D003716 4.8e-18 95.1 131 41.2
Lalb_Chr20g0116111 Lupinus albus HOM05D003198 ORTHO05D003716 6.3e-18 94.7 138 37.7
Manes.03G136000 Manihot esculenta HOM05D003198 ORTHO05D003716 6.3e-18 94.7 131 41.2
PSO541G3688 Papaver somniferum HOM05D003198 ORTHO05D003716 8.2e-18 94.4 135 42.2
PSO675G2203 Papaver somniferum HOM05D003198 ORTHO05D003716 8.2e-18 94.4 135 42.2
Nitab4.5_0001160g0070 Nicotiana tabacum HOM05D003198 ORTHO05D003716 1.1e-17 94.0 113 41.6
Psat5g173000 Pisum sativum HOM05D003198 ORTHO05D003716 1.1e-17 94.0 138 40.6
Glyma.18G089700 Glycine max HOM05D003198 ORTHO05D003716 1.4e-17 93.6 133 39.8
Lsat_1_v5_gn_7_94640 Lactuca sativa HOM05D003198 ORTHO05D003716 1.4e-17 93.6 131 36.6
Manes.15G065900 Manihot esculenta HOM05D003198 ORTHO05D003716 1.4e-17 93.6 131 38.2
Phvul.006G048700 Phaseolus vulgaris HOM05D003198 ORTHO05D003716 1.4e-17 93.6 138 39.1
TWI38G1197 Tripterygium wilfordii HOM05D003198 ORTHO05D003716 1.8e-17 93.2 113 41.6
Oeu013111.1 Olea europaea HOM05D003198 ORTHO05D003716 2.4e-17 92.8 125 39.2
HanXRQChr08g0233641 Helianthus annuus HOM05D003198 ORTHO05D003716 4.1e-17 92.0 132 37.9
Peaxi162Scf00235g00837 Petunia axillaris HOM05D003198 ORTHO05D003716 4.1e-17 92.0 113 40.7
Solyc07g065010.4 Solanum lycopersicum HOM05D003198 ORTHO05D003716 4.1e-17 92.0 128 39.1
EL10Ac4g07684 Beta vulgaris HOM05D003198 ORTHO05D003716 1.5e-16 90.1 129 40.3
HanXRQChr16g0508301 Helianthus annuus HOM05D003198 ORTHO05D003716 2.0e-16 89.7 137 36.5
Sed0016938 Sechium edule HOM05D003198 ORTHO05D003716 2.6e-16 89.4 131 40.5
MELO3C013125.2 Cucumis melo HOM05D003198 ORTHO05D003716 3.4e-16 89.0 128 40.6
ClCG09G011090 Citrullus lanatus HOM05D003198 ORTHO05D003716 5.9e-16 88.2 131 42.0
Oeu019640.1 Olea europaea HOM05D003198 ORTHO05D003716 5.9e-16 88.2 95 45.3
Sp3g18300 Schrenkiella parvula HOM05D003198 ORTHO05D003716 5.9e-16 88.2 139 38.1
unitig_61.g26144 Utricularia gibba HOM05D003198 ORTHO05D003716 7.6e-16 87.8 132 38.6
GSVIVG01037733001 Vitis vinifera HOM05D003198 ORTHO05D003716 1.0e-15 87.4 91 47.3
CsaV3_7G021000 Cucumis sativus L. HOM05D003198 ORTHO05D003716 1.3e-15 87.0 127 40.9
Prupe.1G199100 Prunus persica HOM05D003198 ORTHO05D003716 1.3e-15 87.0 109 43.1
Thhalv10020156m.g Eutrema salsugineum HOM05D003198 ORTHO05D009760 2.9e-15 85.9 133 39.1
Lalb_Chr00c48g0412921 Lupinus albus HOM05D003198 ORTHO05D003716 3.8e-15 85.5 131 37.4
Lalb_Chr04g0248121 Lupinus albus HOM05D003198 ORTHO05D003716 3.8e-15 85.5 131 37.4
BraA05t21741Z Brassica rapa HOM05D003198 ORTHO05D003716 6.5e-15 84.7 130 36.9
Aa31LG8G7080 Aethionema arabicum HOM05D003198 ORTHO05D003716 8.5e-15 84.3 139 36.7
CARHR095880 Cardamine hirsuta HOM05D003198 ORTHO05D003716 8.5e-15 84.3 129 37.2
Lalb_Chr00c48g0413011 Lupinus albus HOM05D003198 ORTHO05D003716 1.1e-14 84.0 127 37.8
Medtr3g054360 Medicago truncatula HOM05D003198 ORTHO05D003716 1.1e-14 84.0 136 37.5
Cpa.g.sc12.239 Carica papaya HOM05D003198 ORTHO05D003716 2.5e-14 82.8 113 38.1
A05p28650 Brassica napus HOM05D003198 ORTHO05D003716 3.2e-14 82.4 130 36.2
Medtr3g054370 Medicago truncatula HOM05D003198 ORTHO05D003716 3.2e-14 82.4 138 38.4
PGSC0003DMG401022202 Solanum tuberosum HOM05D003198 ORTHO05D003716 7.2e-14 81.3 90 43.3
unitig_21.g20275 Utricularia gibba HOM05D003198 ORTHO05D003867 7.2e-14 81.3 129 37.2
C05p44050 Brassica napus HOM05D003198 ORTHO05D003716 1.6e-13 80.1 130 35.4
SEGI_01628 Sequoiadendron giganteum HOM05D003198 ORTHO05D003716 1.6e-13 80.1 106 35.8
AL880U10020 Arabidopsis lyrata HOM05D003198 ORTHO05D003716 2.7e-13 79.3 128 37.5
AL3G33980 Arabidopsis lyrata HOM05D003198 ORTHO05D003716 7.9e-13 77.8 128 36.7
AT3G20270 Arabidopsis thaliana HOM05D003198 ORTHO05D003716 7.9e-13 77.8 138 34.8
SEGI_04729 Sequoiadendron giganteum HOM05D003198 ORTHO05D003716 2.3e-12 76.3 143 30.8
Sopen07g033220 Solanum pennellii HOM05D003198 ORTHO05D003716 2.3e-12 76.3 90 40.0
ECA236G1803 Erigeron canadensis HOM05D003198 ORTHO05D000023 1.5e-11 73.6 89 39.3
CAN.G337.51 Capsicum annuum HOM05D003198 ORTHO05D003716 9.7e-11 70.9 90 36.7
SMO332G0012 Selaginella moellendorffii HOM05D003198 ORTHO05D003716 2.4e-09 66.2 102 36.3
Ca_06043_v3 Cicer arietinum L. HOM05D003198 ORTHO05D003716 4.1e-09 65.5 69 43.5
TPR.G32229 Trifolium pratense HOM05D003198 ORTHO05D003716 4.1e-09 65.5 163 31.3
Mapoly0003s0230 Marchantia polymorpha HOM05D003198 ORTHO05D003716 1.0e-07 60.8 115 32.2
AagrBONN_evm.TU.Sc2ySwM_228.3311 Anthoceros agrestis HOM05D003198 ORTHO05D003716 1.3e-07 60.5 121 29.8
CBR_g6308 Chara braunii HOM05D003198 ORTHO05D003716 2.9e-07 59.3 112 30.4
Oeu054312.2 Olea europaea HOM05D003198 ORTHO05D003716 3.8e-07 58.9 61 44.3
Pp3c23_19210 Physcomitrium patens HOM05D003198 ORTHO05D003716 3.2e-06 55.8 105 32.4
Duzib213G0191 Durio zibethinus HOM05D003198 ORTHO05D000645 9.4e-06 54.3 36 69.4
ECA246G1111 Erigeron canadensis HOM05D003198 ORTHO05D003716 9.4e-06 54.3 74 33.8


User provided reference genes

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