Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.6e-114 416.0 197 100.0
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 1.3e-76 290.0 189 67.7
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.5e-75 286.6 186 67.2
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 5.4e-70 268.1 185 64.3
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 6.2e-66 254.6 189 63.0
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 3.1e-65 252.3 189 61.9
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 2.6e-64 249.2 188 62.2
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 4.4e-64 248.4 179 65.4
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 2.2e-63 246.1 188 59.0
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 8.4e-63 244.2 189 58.2
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 4.2e-62 241.9 189 60.3
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 1.2e-61 240.4 184 59.8
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 2.3e-60 236.1 184 60.3
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 8.7e-60 234.2 189 61.4
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 1.9e-59 233.0 189 58.7
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 1.9e-59 233.0 188 60.6
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 7.3e-59 231.1 189 58.7
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 7.3e-59 231.1 189 58.7
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.3e-58 230.3 189 58.7
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 2.1e-58 229.6 183 59.0
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 2.8e-58 229.2 183 59.0
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 4.8e-58 228.4 185 58.4
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 8.1e-58 227.6 189 58.7
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 8.1e-58 227.6 187 58.3
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 1.1e-57 227.3 189 57.1
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 1.1e-57 227.3 189 55.0
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 1.4e-57 226.9 183 56.3
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 1.8e-57 226.5 183 55.7
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 1.8e-57 226.5 187 58.3
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 2.4e-57 226.1 187 58.8
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 3.1e-57 225.7 183 56.8
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 4.0e-57 225.3 188 57.4
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 4.0e-57 225.3 187 55.1
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 5.3e-57 224.9 189 56.6
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 5.3e-57 224.9 183 57.4
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 6.9e-57 224.6 186 58.1
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 9.0e-57 224.2 186 58.1
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 9.0e-57 224.2 183 56.8
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 9.0e-57 224.2 188 57.4
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 1.2e-56 223.8 183 56.8
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 1.2e-56 223.8 183 56.8
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 1.2e-56 223.8 188 55.3
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 1.2e-56 223.8 190 58.9
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 1.5e-56 223.4 183 56.3
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 1.5e-56 223.4 185 57.3
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 2.0e-56 223.0 190 57.9
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 2.0e-56 223.0 194 58.2
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 2.6e-56 222.6 185 57.8
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 2.6e-56 222.6 190 56.8
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 3.4e-56 222.2 190 57.4
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 4.5e-56 221.9 183 56.3
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 4.5e-56 221.9 184 57.6
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 4.5e-56 221.9 184 56.5
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 5.8e-56 221.5 184 59.2
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 5.8e-56 221.5 119 86.6
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 1.3e-55 220.3 183 55.7
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 1.3e-55 220.3 183 55.7
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 1.3e-55 220.3 184 56.5
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 1.7e-55 219.9 189 56.1
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 1.7e-55 219.9 189 55.0
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.7e-55 219.9 189 55.0
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 1.7e-55 219.9 190 57.9
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 1.7e-55 219.9 183 57.4
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 2.2e-55 219.5 188 56.4
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 2.9e-55 219.2 189 54.0
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 2.9e-55 219.2 190 56.8
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 3.8e-55 218.8 182 55.5
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 3.8e-55 218.8 189 56.6
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 3.8e-55 218.8 189 56.6
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 3.8e-55 218.8 185 57.8
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 3.8e-55 218.8 185 57.8
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 4.9e-55 218.4 189 56.6
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 4.9e-55 218.4 190 56.3
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 4.9e-55 218.4 190 57.4
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 8.4e-55 217.6 189 56.1
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 1.9e-54 216.5 184 55.4
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 1.9e-54 216.5 198 56.6
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 2.4e-54 216.1 184 54.9
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 2.4e-54 216.1 198 56.6
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 3.2e-54 215.7 183 53.6
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 3.2e-54 215.7 184 54.9
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 4.2e-54 215.3 185 56.8
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 4.2e-54 215.3 194 56.7
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 4.2e-54 215.3 184 53.8
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 4.2e-54 215.3 198 56.1
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 5.4e-54 214.9 182 56.0
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 7.1e-54 214.5 185 57.8
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 9.3e-54 214.2 194 56.2
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 9.3e-54 214.2 185 55.7
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 1.6e-53 213.4 182 57.7
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 2.1e-53 213.0 171 60.8
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 2.1e-53 213.0 184 56.0
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 2.7e-53 212.6 184 53.8
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 2.7e-53 212.6 184 55.4
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 3.5e-53 212.2 206 52.4
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 3.5e-53 212.2 185 56.8
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 3.5e-53 212.2 189 54.0
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 3.5e-53 212.2 184 54.3
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 4.6e-53 211.8 184 53.8
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 6.0e-53 211.5 184 54.9
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 7.9e-53 211.1 189 54.5
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 1.0e-52 210.7 185 56.2
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 5.6e-51 204.9 189 51.3
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 1.3e-50 203.8 188 51.1
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 2.8e-50 202.6 187 50.3
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 6.2e-50 201.4 183 51.4
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 2.4e-49 199.5 192 48.4
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 3.1e-49 199.1 224 48.7
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 6.9e-49 198.0 190 51.1
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 1.5e-48 196.8 216 49.1
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 5.8e-48 194.9 184 51.1
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 3.8e-47 192.2 190 49.5
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 3.8e-47 192.2 186 51.6
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 2.5e-46 189.5 150 60.7
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 4.2e-46 188.7 189 51.9
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 2.3e-44 183.0 183 47.0
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 6.7e-44 181.4 183 47.5
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 5.3e-41 171.8 149 54.4
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.1e-38 164.1 152 51.3
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.3e-34 150.6 137 51.1
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 4.3e-27 125.6 81 69.1
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.4e-25 120.6 101 58.4
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 1.3e-23 114.0 79 60.8
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 1.9e-22 110.2 110 50.9
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 9.7e-19 97.8 113 46.9
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 1.8e-12 77.0 90 47.8
PRCOL_00002298 Prasinoderma coloniale HOM05D006185 ORTHO05D007572 1.7e-10 70.5 205 27.3
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 9.1e-09 64.7 75 44.0


User provided reference genes

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