Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0132600 Oryza sativa ssp. japonica HOM05D006814 ORTHO05D008613 1.2e-174 616.3 297 100.0
Zm00001eb269700 Zea mays HOM05D006814 ORTHO05D008613 2.7e-137 492.3 270 84.4
Ciclev10032236m.g Citrus clementina HOM05D006814 ORTHO05D008613 5.6e-127 458.0 265 80.0
Duzib205G0392 Durio zibethinus HOM05D006814 ORTHO05D008613 2.1e-126 456.1 266 79.7
Nn1g02991 Nelumbo nucifera HOM05D006814 ORTHO05D008613 2.8e-126 455.7 265 79.6
TAR629G1931 Trochodendron aralioides HOM05D006814 ORTHO05D008613 4.7e-126 454.9 265 80.4
Hund14354 Selenicereus undatus HOM05D006814 ORTHO05D008613 1.4e-125 453.4 266 78.2
CiPaw.11G097800 Carya illinoinensis HOM05D006814 ORTHO05D008613 2.3e-125 452.6 265 79.6
Gohir.A08G154800 Gossypium hirsutum HOM05D006814 ORTHO05D008613 3.1e-125 452.2 265 79.2
Gohir.D08G175300 Gossypium hirsutum HOM05D006814 ORTHO05D008613 3.1e-125 452.2 265 79.2
CiPaw.11G096600 Carya illinoinensis HOM05D006814 ORTHO05D008613 8.9e-125 450.7 265 79.2
Gorai.004G183200 Gossypium raimondii HOM05D006814 ORTHO05D008613 2.0e-124 449.5 265 78.9
Aqoxy4G00304 Aquilegia oxysepala HOM05D006814 ORTHO05D008613 3.4e-124 448.7 266 78.6
Sabra01G0108000 Salix brachista HOM05D006814 ORTHO05D008613 3.4e-124 448.7 266 78.2
CSS0047525 Camellia sinensis var. sinensis HOM05D006814 ORTHO05D008613 9.8e-124 447.2 266 78.2
Potri.001G139100 Populus trichocarpa HOM05D006814 ORTHO05D008613 9.8e-124 447.2 266 78.2
Thecc.03G307100 Theobroma cacao HOM05D006814 ORTHO05D008613 1.3e-123 446.8 265 78.9
Cfa012484 Carpinus fangiana HOM05D006814 ORTHO05D008613 1.7e-123 446.4 265 78.1
Peaxi162Scf00170g01111 Petunia axillaris HOM05D006814 ORTHO05D008613 1.7e-123 446.4 266 77.4
Manes.02G107600 Manihot esculenta HOM05D006814 ORTHO05D008613 2.2e-123 446.0 265 78.5
Cc08_g03190 Coffea canephora HOM05D006814 ORTHO05D008613 3.7e-123 445.3 269 77.0
Actinidia03355 Actinidia chinensis HOM05D006814 ORTHO05D008613 4.9e-123 444.9 266 77.1
Cpa.g.sc87.105 Carica papaya HOM05D006814 ORTHO05D008613 4.9e-123 444.9 259 79.2
Hma1.2p1_0586F.1_g183880 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 8.3e-123 444.1 265 78.5
RcHm_v2.0_Chr7g0211071 Rosa chinensis HOM05D006814 ORTHO05D008613 8.3e-123 444.1 268 75.0
HanXRQChr17g0538211 Helianthus annuus HOM05D006814 ORTHO05D008613 1.9e-122 443.0 266 77.1
HanXRQChr17g0538231 Helianthus annuus HOM05D006814 ORTHO05D008613 1.9e-122 443.0 266 77.1
Rhsim11G0018900 Rhododendron simsii HOM05D006814 ORTHO05D008613 1.9e-122 443.0 266 77.1
GSVIVG01013112001 Vitis vinifera HOM05D006814 ORTHO05D008613 1.9e-122 443.0 257 79.0
Carub.0007s2360 Capsella rubella HOM05D006814 ORTHO05D008613 2.4e-122 442.6 266 74.4
FAN04G0609 Fragaria x ananassa HOM05D006814 ORTHO05D008613 2.4e-122 442.6 268 74.6
FAN08G0276 Fragaria x ananassa HOM05D006814 ORTHO05D008613 2.4e-122 442.6 268 74.6
FAN18G2202 Fragaria x ananassa HOM05D006814 ORTHO05D008613 3.2e-122 442.2 268 74.6
Atru.chr6.1626 Acer truncatum HOM05D006814 ORTHO05D008613 5.4e-122 441.4 265 78.1
FvH4_5g22650 Fragaria vesca HOM05D006814 ORTHO05D008613 7.0e-122 441.0 268 74.3
AL7G36810 Arabidopsis lyrata HOM05D006814 ORTHO05D008613 1.2e-121 440.3 267 73.8
Nitab4.5_0000685g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 1.2e-121 440.3 266 76.7
FAN18G0582 Fragaria x ananassa HOM05D006814 ORTHO05D008613 1.6e-121 439.9 268 74.3
PGSC0003DMG400014801 Solanum tuberosum HOM05D006814 ORTHO05D008613 2.7e-121 439.1 266 77.1
Thhalv10025847m.g Eutrema salsugineum HOM05D006814 ORTHO05D008613 4.6e-121 438.3 266 74.8
CANSAT21G0682 Cannabis sativa HOM05D006814 ORTHO05D008613 6.0e-121 438.0 266 76.3
Lsat_1_v5_gn_3_19041 Lactuca sativa HOM05D006814 ORTHO05D008613 6.0e-121 438.0 266 75.9
Solyc08g076610.4 Solanum lycopersicum HOM05D006814 ORTHO05D008613 7.8e-121 437.6 266 76.7
MD11G1183600 Malus domestica HOM05D006814 ORTHO05D008613 1.0e-120 437.2 269 76.2
PSO063G6077 Papaver somniferum HOM05D006814 ORTHO05D008613 1.0e-120 437.2 265 75.5
BcaNung04035 Brassica carinata HOM05D006814 ORTHO05D008613 1.7e-120 436.4 266 74.8
A03p50690 Brassica napus HOM05D006814 ORTHO05D008613 1.7e-120 436.4 266 74.8
vmacro00308 Vaccinium macrocarpon HOM05D006814 ORTHO05D008613 1.7e-120 436.4 287 72.5
Aa31LG6G500 Aethionema arabicum HOM05D006814 ORTHO05D008613 2.3e-120 436.0 266 74.4
BraA03t14161Z Brassica rapa HOM05D006814 ORTHO05D008613 3.0e-120 435.6 266 74.4
AUR62007326 Chenopodium quinoa HOM05D006814 ORTHO05D008613 3.0e-120 435.6 261 77.4
CAN.G298.54 Capsicum annuum HOM05D006814 ORTHO05D008613 5.1e-120 434.9 266 75.9
Sopen08g025160 Solanum pennellii HOM05D006814 ORTHO05D008613 5.1e-120 434.9 266 76.3
THA.LOC104798334 Tarenaya hassleriana HOM05D006814 ORTHO05D008613 5.1e-120 434.9 267 75.3
TWI60G0232 Tripterygium wilfordii HOM05D006814 ORTHO05D008613 5.1e-120 434.9 265 75.5
BcaC06g33591 Brassica carinata HOM05D006814 ORTHO05D008613 6.6e-120 434.5 266 74.4
BolC7t45420H Brassica oleracea HOM05D006814 ORTHO05D008613 6.6e-120 434.5 266 74.4
MELO3C008839.2 Cucumis melo HOM05D006814 ORTHO05D008613 1.1e-119 433.7 266 74.4
CARHR224480 Cardamine hirsuta HOM05D006814 ORTHO05D008613 1.5e-119 433.3 266 73.3
Lj8A305G45 Lonicera japonica HOM05D006814 ORTHO05D008613 1.5e-119 433.3 266 77.1
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 1.5e-119 433.3 270 77.0
Lj3g0020867 Lotus japonicus HOM05D006814 ORTHO05D008613 1.9e-119 433.0 269 74.0
PGR031G2224 Punica granatum HOM05D006814 ORTHO05D008613 2.5e-119 432.6 265 75.8
CsaV3_4G012030 Cucumis sativus L. HOM05D006814 ORTHO05D008613 4.3e-119 431.8 266 74.1
Sp7g16350 Schrenkiella parvula HOM05D006814 ORTHO05D008613 5.6e-119 431.4 266 74.1
ClCG04G005520 Citrullus lanatus HOM05D006814 ORTHO05D008613 9.5e-119 430.6 283 71.4
MSTRG.24841 Avicennia marina HOM05D006814 ORTHO05D008613 6.2e-118 427.9 268 71.6
Migut.A01081 Erythranthe guttata HOM05D006814 ORTHO05D008613 8.1e-118 427.6 268 72.8
arahy.Tifrunner.gnm1.ann1.DD0PLV Arachis hypogaea HOM05D006814 ORTHO05D008613 1.1e-117 427.2 266 72.6
Medtr8g447310 Medicago truncatula HOM05D006814 ORTHO05D008613 1.1e-117 427.2 264 73.5
ECA246G4850 Erigeron canadensis HOM05D006814 ORTHO05D008613 1.8e-117 426.4 283 71.4
DCAR_032083 Daucus carota HOM05D006814 ORTHO05D008613 4.0e-117 425.2 264 75.0
Psat4g131760 Pisum sativum HOM05D006814 ORTHO05D008613 4.0e-117 425.2 264 73.1
TPR.G8183 Trifolium pratense HOM05D006814 ORTHO05D008613 4.0e-117 425.2 261 73.9
Ca_26271_v3 Cicer arietinum L. HOM05D006814 ORTHO05D008613 8.9e-117 424.1 264 73.5
arahy.Tifrunner.gnm1.ann1.S7AV19 Arachis hypogaea HOM05D006814 ORTHO05D008613 1.2e-116 423.7 266 71.4
Sc07g0008590 Simmondsia chinensis HOM05D006814 ORTHO05D008613 2.0e-116 422.9 266 74.4
VMungo0251G2608 Vigna mungo HOM05D006814 ORTHO05D008613 2.0e-116 422.9 267 72.3
COL.COLO4_16971 Corchorus olitorius HOM05D006814 ORTHO05D008613 3.4e-116 422.2 244 80.3
CDE11G0551 Ceratophyllum demersum HOM05D006814 ORTHO05D008613 7.5e-116 421.0 267 70.4
C07p49120 Brassica napus HOM05D006814 ORTHO05D008613 9.9e-116 420.6 291 68.0
SGA_v2.0_scaffold36G14306 Striga asiatica HOM05D006814 ORTHO05D008613 9.9e-116 420.6 298 68.8
AUR62018677 Chenopodium quinoa HOM05D006814 ORTHO05D008613 2.4e-114 416.0 266 74.1
QL12p004459 Quercus lobata HOM05D006814 ORTHO05D008613 4.1e-114 415.2 286 70.3
Glyma.20G095300 Glycine max HOM05D006814 ORTHO05D008613 3.0e-112 409.1 265 72.5
Lalb_Chr05g0228761 Lupinus albus HOM05D006814 ORTHO05D008613 3.9e-112 408.7 260 71.9
EL10Ac5g12048 Beta vulgaris HOM05D006814 ORTHO05D008613 6.6e-112 407.9 269 71.4
Aa31LG9G8590 Aethionema arabicum HOM05D006814 ORTHO05D008613 8.6e-112 407.5 266 70.3
ATR0772G225 Amborella trichopoda HOM05D006814 ORTHO05D008613 7.3e-111 404.4 260 73.1
Oeu005300.2 Olea europaea HOM05D006814 ORTHO05D008613 6.2e-110 401.4 314 61.8
Prupe.4G270400 Prunus persica HOM05D006814 ORTHO05D008613 2.1e-105 386.3 228 77.6
SEGI_31198 Sequoiadendron giganteum HOM05D006814 ORTHO05D008613 6.2e-102 374.8 265 65.7
Haze_08181 Corylus avellana HOM05D006814 ORTHO05D008613 9.9e-100 367.5 268 67.9
Sed0016076 Sechium edule HOM05D006814 ORTHO05D008613 1.3e-96 357.1 220 73.6
Pp3c10_20230 Physcomitrium patens HOM05D006814 ORTHO05D008613 1.3e-94 350.5 253 62.5
Mapoly0097s0033 Marchantia polymorpha HOM05D006814 ORTHO05D008613 1.1e-90 337.4 268 60.8
Dinv28983 Davidia involucrata HOM05D006814 ORTHO05D008613 1.9e-90 336.7 198 78.8
SMO358G0599 Selaginella moellendorffii HOM05D006814 ORTHO05D008613 2.1e-89 333.2 254 61.0
AagrBONN_evm.TU.Sc2ySwM_228.215 Anthoceros agrestis HOM05D006814 ORTHO05D008613 1.0e-88 330.9 250 60.0
Eucgr.D02215 Eucalyptus grandis HOM05D006814 ORTHO05D008613 1.3e-86 323.9 202 71.8
Phvul.003G283200 Phaseolus vulgaris HOM05D006814 ORTHO05D008613 2.5e-82 309.7 198 72.7
Nitab4.5_0025014g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 3.1e-69 266.2 165 75.8
CBR_g3124 Chara braunii HOM05D006814 ORTHO05D008613 7.2e-66 255.0 221 54.8
AT4G17760 Arabidopsis thaliana HOM05D006814 ORTHO05D008613 8.8e-64 248.1 154 71.4
GSVIVG01003310001 Vitis vinifera HOM05D006814 ORTHO05D008613 1.2e-57 227.6 152 66.4
SalBow6G3153 Salvia bowleyana HOM05D006814 ORTHO05D008613 1.1e-45 188.0 109 78.9
DCAR_021700 Daucus carota HOM05D006814 ORTHO05D013862 4.5e-36 156.0 115 63.5
Hma1.2p1_0572F.1_g181150 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 9.4e-34 148.3 109 67.0
Hma1.2p1_0586F.1_g183890 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 2.0e-28 130.6 120 59.2
Cre03.g162250 Chlamydomonas reinhardtii HOM05D006814 ORTHO05D008613 7.7e-28 128.6 297 28.6
CAN.G298.53 Capsicum annuum HOM05D006814 ORTHO05D008613 4.0e-24 116.3 81 65.4
MCO03G144 Micromonas commoda HOM05D006814 ORTHO05D008613 2.0e-23 114.0 294 27.6
Actinidia25985 Actinidia chinensis HOM05D006814 ORTHO05D008613 2.8e-22 110.2 71 74.6
CAN.G298.50 Capsicum annuum HOM05D006814 ORTHO05D008613 6.3e-22 109.0 69 69.6
Glyma.10G145666 Glycine max HOM05D006814 ORTHO05D008613 5.4e-21 105.9 73 67.1
PRCOL_00006064 Prasinoderma coloniale HOM05D006814 ORTHO05D008613 7.0e-21 105.5 247 29.1
CAN.G2435.1 Capsicum annuum HOM05D006814 ORTHO05D008613 1.9e-13 80.9 45 77.8
Actinidia25984 Actinidia chinensis HOM05D006814 ORTHO05D008613 2.4e-13 80.5 46 80.4
EL10As1g23070 Beta vulgaris HOM05D006814 ORTHO05D088401 2.8e-09 67.0 41 73.2


User provided reference genes

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