Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 2.5e-256 888.3 437 100.0
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 5.5e-216 754.2 439 82.0
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 8.6e-185 650.6 425 72.7
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 6.2e-183 644.4 428 70.8
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 2.3e-182 642.5 423 72.1
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 3.1e-182 642.1 424 72.4
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 5.2e-182 641.3 423 72.1
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 8.9e-182 640.6 423 71.4
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 1.3e-180 636.7 423 70.7
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 1.3e-180 636.7 419 70.9
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 1.7e-180 636.3 423 70.4
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 2.2e-180 636.0 423 70.4
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 3.7e-180 635.2 423 70.7
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 8.3e-180 634.0 438 68.9
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 1.1e-179 633.6 423 70.7
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 1.4e-179 633.3 428 70.1
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 4.1e-179 631.7 425 72.2
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 4.1e-179 631.7 423 71.2
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 5.4e-179 631.3 431 68.7
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 5.4e-179 631.3 423 71.2
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 5.4e-179 631.3 419 70.4
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 1.2e-178 630.2 441 67.3
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 4.6e-178 628.2 431 69.4
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 6.0e-178 627.9 417 71.0
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 1.0e-177 627.1 428 69.2
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 2.3e-177 625.9 423 70.0
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 2.3e-177 625.9 423 69.7
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 3.0e-177 625.5 423 69.5
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 3.0e-177 625.5 431 69.1
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 5.1e-177 624.8 431 68.2
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 6.6e-177 624.4 416 68.0
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 8.6e-177 624.0 443 69.1
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 8.6e-177 624.0 443 69.1
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 1.1e-176 623.6 431 69.4
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 1.5e-176 623.2 433 68.4
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 1.5e-176 623.2 419 68.3
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 3.3e-176 622.1 433 68.1
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 7.3e-176 620.9 417 70.3
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 8.1e-175 617.5 423 67.6
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 8.1e-175 617.5 426 68.8
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 1.1e-174 617.1 423 67.8
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.1e-174 615.5 423 68.3
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 3.1e-174 615.5 423 68.3
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 4.0e-174 615.1 417 70.3
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 5.2e-174 614.8 423 69.3
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 1.5e-173 613.2 423 66.9
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 1.5e-173 613.2 416 68.0
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 2.2e-172 609.4 416 69.2
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 4.9e-172 608.2 422 67.5
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 6.4e-172 607.8 423 66.7
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.4e-171 606.7 423 67.4
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 2.4e-171 605.9 416 68.0
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 2.4e-171 605.9 425 66.1
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 3.2e-171 605.5 416 68.5
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 3.5e-170 602.1 482 61.0
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 2.3e-169 599.4 431 65.7
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 1.1e-168 597.0 416 67.1
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 1.5e-168 596.7 423 66.7
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 2.5e-168 595.9 416 67.5
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 9.6e-168 594.0 416 67.1
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 1.2e-167 593.6 416 66.8
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 1.2e-167 593.6 416 67.1
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 1.6e-167 593.2 416 66.8
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 2.1e-167 592.8 416 66.8
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 8.1e-167 590.9 424 66.3
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 8.1e-167 590.9 423 66.7
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 1.4e-166 590.1 424 66.0
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 2.4e-166 589.3 414 66.7
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 2.4e-166 589.3 419 65.6
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 9.0e-166 587.4 423 65.5
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 1.5e-165 586.6 424 66.3
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 2.0e-165 586.3 424 65.6
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 5.8e-165 584.7 416 66.3
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 5.8e-165 584.7 424 66.0
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 7.6e-165 584.3 422 66.8
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 9.9e-165 583.9 416 65.6
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 3.8e-164 582.0 423 66.0
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 8.4e-164 580.9 423 65.0
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 1.6e-162 576.6 423 64.8
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 2.7e-162 575.9 423 64.8
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 3.5e-162 575.5 435 64.1
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 2.3e-161 572.8 430 64.2
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 3.0e-161 572.4 392 68.4
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 1.5e-160 570.1 420 65.5
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 1.5e-160 570.1 420 65.5
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 1.9e-160 569.7 421 64.4
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 3.3e-160 568.9 420 64.8
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 5.6e-160 568.2 453 60.3
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 9.6e-160 567.4 453 60.3
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 2.1e-159 566.2 420 64.5
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 2.9e-156 555.8 426 63.1
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 2.4e-155 552.7 422 59.5
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 4.2e-155 552.0 430 57.2
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 1.2e-154 550.4 418 60.3
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 2.7e-154 549.3 445 61.1
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 5.3e-150 535.0 431 59.9
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 1.2e-149 533.9 430 61.4
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 2.3e-145 519.6 414 58.7
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 1.9e-144 516.5 418 60.5
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 2.5e-136 489.6 746 39.1
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 2.8e-135 486.1 292 78.4
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.9e-131 473.4 431 55.7
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 1.5e-128 463.8 414 51.7
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 3.8e-124 449.1 324 67.0
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 1.9e-123 446.8 418 56.5
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 4.4e-120 435.6 305 67.2
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 7.2e-115 418.3 424 46.9
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 4.7e-114 415.6 437 46.7
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 9.7e-112 407.9 576 40.8
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 7.7e-109 398.3 286 64.3
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 8.8e-105 384.8 434 47.7
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 4.0e-97 359.4 439 42.6
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 2.4e-94 350.1 426 45.3
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 1.6e-93 347.4 297 61.6
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 5.6e-75 285.8 281 50.9
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 4.9e-71 272.7 469 35.4
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 2.4e-70 270.4 175 76.0
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 6.2e-66 255.8 216 58.8
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 9.9e-64 248.4 190 61.1
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 4.6e-61 239.6 248 52.0
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 6.2e-58 229.2 262 48.5
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 8.9e-57 225.3 226 49.6
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 4.2e-54 216.5 237 47.3
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 9.3e-54 215.3 150 64.0
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 2.7e-53 213.8 247 47.4
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 2.1e-50 204.1 133 73.7
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 3.5e-45 186.8 205 48.3
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 2.5e-43 180.6 105 78.1
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 4.8e-42 176.4 106 80.2
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 1.8e-41 174.5 121 65.3
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 2.4e-33 147.5 116 58.6
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 5.3e-33 146.4 143 52.4
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 1.5e-32 144.8 114 64.0
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 2.0e-32 144.4 119 57.1
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 4.9e-31 139.8 174 43.1
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 3.2e-30 137.1 207 39.1
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 5.5e-30 136.3 214 40.7
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 1.8e-28 131.3 114 57.9
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 3.9e-28 130.2 70 77.1
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 5.7e-27 126.3 101 55.4
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 1.6e-26 124.8 101 54.5
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.1e-25 122.1 79 67.1
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 2.4e-25 120.9 79 64.6
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 2.4e-25 120.9 70 70.0
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 1.5e-24 118.2 108 46.3
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 4.5e-24 116.7 64 82.8
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 1.0e-23 115.5 63 82.5
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 1.0e-23 115.5 64 81.2
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 7.2e-22 109.4 85 56.5
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 7.2e-22 109.4 85 56.5
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 7.2e-22 109.4 85 56.5
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.6e-21 108.2 85 55.3
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 2.7e-21 107.5 113 46.0
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 8.7e-20 102.4 97 52.6
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 1.1e-17 95.5 62 71.0
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 1.4e-17 95.1 70 62.9
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 5.3e-17 93.2 62 71.0
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 9.0e-17 92.4 101 48.5
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 1.2e-16 92.0 85 55.3
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 1.5e-16 91.7 55 74.5
FvH4_3g33711 Fragaria vesca HOM05D003729 ORTHO05D001837 1.3e-15 88.6 96 45.8
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 2.7e-13 80.9 63 63.5
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 4.6e-13 80.1 55 61.8
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 6.7e-12 76.3 47 72.3
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 1.1e-11 75.5 59 59.3
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 8.2e-10 69.3 77 49.4
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 1.8e-09 68.2 49 65.3
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 1.8e-09 68.2 49 65.3
SHI48244 Sapria himalayana HOM05D003729 ORTHO05D004384 1.8e-09 68.2 39 71.8
Sabra06G0025400 Salix brachista HOM05D003729 ORTHO05D004384 2.0e-08 64.7 34 76.5
Medtr8g007590 Medicago truncatula HOM05D003729 ORTHO05D004384 2.9e-07 60.8 36 66.7


User provided reference genes

Program Settings