Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0114600 Oryza sativa ssp. japonica HOM05D006533 ORTHO05D008625 1.3e-206 723.0 413 100.0
Zm00001eb268960 Zea mays HOM05D006533 ORTHO05D008625 1.3e-142 510.4 320 78.8
HPP92_005443 Vanilla planifolia HOM05D006533 ORTHO05D008625 3.2e-120 436.0 362 60.5
GSVIVG01024411001 Vitis vinifera HOM05D006533 ORTHO05D008625 1.9e-112 410.2 355 58.6
PSO063G2320 Papaver somniferum HOM05D006533 ORTHO05D008625 1.1e-109 401.0 355 56.3
Aqoxy3G02101 Aquilegia oxysepala HOM05D006533 ORTHO05D008625 2.5e-109 399.8 357 57.4
Actinidia34305 Actinidia chinensis HOM05D006533 ORTHO05D008625 4.0e-107 392.5 357 56.0
CiPaw.06G033000 Carya illinoinensis HOM05D006533 ORTHO05D008625 9.8e-106 387.9 355 56.6
Phvul.002G039600 Phaseolus vulgaris HOM05D006533 ORTHO05D008625 1.3e-105 387.5 349 55.0
Glyma.01G228300 Glycine max HOM05D006533 ORTHO05D008625 8.3e-105 384.8 349 56.7
Lj6g0021866 Lotus japonicus HOM05D006533 ORTHO05D008625 1.4e-104 384.0 349 56.2
Solyc02g094260.1 Solanum lycopersicum HOM05D006533 ORTHO05D008625 1.9e-104 383.6 351 55.0
Sopen02g038900 Solanum pennellii HOM05D006533 ORTHO05D008625 1.9e-104 383.6 351 55.0
Thecc.01G135900 Theobroma cacao HOM05D006533 ORTHO05D008625 1.9e-104 383.6 354 55.6
RcHm_v2.0_Chr1g0384131 Rosa chinensis HOM05D006533 ORTHO05D008625 7.1e-104 381.7 355 54.6
QL09p024067 Quercus lobata HOM05D006533 ORTHO05D008625 1.6e-103 380.6 354 54.8
ATR0829G094 Amborella trichopoda HOM05D006533 ORTHO05D008625 3.5e-103 379.4 368 53.5
AUR62002060 Chenopodium quinoa HOM05D006533 ORTHO05D008625 3.5e-103 379.4 356 54.2
AUR62028174 Chenopodium quinoa HOM05D006533 ORTHO05D008625 6.0e-103 378.6 356 54.5
MD07G1308500 Malus domestica HOM05D006533 ORTHO05D008625 6.0e-103 378.6 364 53.3
PGSC0003DMG400020249 Solanum tuberosum HOM05D006533 ORTHO05D008625 6.0e-103 378.6 350 54.6
Gorai.006G005800 Gossypium raimondii HOM05D006533 ORTHO05D008625 1.0e-102 377.9 353 54.4
CsaV3_3G015700 Cucumis sativus L. HOM05D006533 ORTHO05D008625 1.3e-102 377.5 357 52.9
FAN03G0602 Fragaria x ananassa HOM05D006533 ORTHO05D008625 1.3e-102 377.5 354 55.1
Gohir.A09G004900 Gossypium hirsutum HOM05D006533 ORTHO05D008625 1.7e-102 377.1 353 54.4
ClCG05G007010 Citrullus lanatus HOM05D006533 ORTHO05D008625 2.3e-102 376.7 357 52.7
FvH4_7g33920 Fragaria vesca HOM05D006533 ORTHO05D008625 2.3e-102 376.7 356 54.8
Gohir.D09G004200 Gossypium hirsutum HOM05D006533 ORTHO05D008625 2.3e-102 376.7 353 54.4
FAN10G3989 Fragaria x ananassa HOM05D006533 ORTHO05D008625 3.9e-102 375.9 357 54.9
Oeu060384.1 Olea europaea HOM05D006533 ORTHO05D008625 3.9e-102 375.9 353 54.7
PGR142G1840 Punica granatum HOM05D006533 ORTHO05D008625 5.1e-102 375.6 351 54.1
Medtr5g007700 Medicago truncatula HOM05D006533 ORTHO05D008625 1.5e-101 374.0 349 54.7
Cc02_g00290 Coffea canephora HOM05D006533 ORTHO05D008625 1.9e-101 373.6 356 54.2
Lalb_Chr09g0320221 Lupinus albus HOM05D006533 ORTHO05D008625 1.9e-101 373.6 351 55.0
Potri.013G082000 Populus trichocarpa HOM05D006533 ORTHO05D008625 2.5e-101 373.2 355 54.9
Sed0002742 Sechium edule HOM05D006533 ORTHO05D008625 3.3e-101 372.9 356 52.5
MSTRG.8576 Avicennia marina HOM05D006533 ORTHO05D008625 5.6e-101 372.1 356 53.9
Migut.F00098 Erythranthe guttata HOM05D006533 ORTHO05D008625 5.6e-101 372.1 351 53.8
Glyma.11G011100 Glycine max HOM05D006533 ORTHO05D008625 9.5e-101 371.3 348 55.2
Sabra13G0070900 Salix brachista HOM05D006533 ORTHO05D008625 1.6e-100 370.5 354 53.7
CANSAT56G1022 Cannabis sativa HOM05D006533 ORTHO05D008625 3.6e-100 369.4 356 53.1
CANSAT56G3916 Cannabis sativa HOM05D006533 ORTHO05D008625 6.2e-100 368.6 356 52.8
arahy.Tifrunner.gnm1.ann1.NII7HE Arachis hypogaea HOM05D006533 ORTHO05D008625 8.1e-100 368.2 350 51.4
Ca_24442_v3 Cicer arietinum L. HOM05D006533 ORTHO05D008625 1.8e-99 367.1 351 54.1
SGA_v2.0_scaffold18G08508 Striga asiatica HOM05D006533 ORTHO05D008625 2.3e-99 366.7 355 51.8
Atru.chr1.2781 Acer truncatum HOM05D006533 ORTHO05D008625 5.2e-99 365.5 353 52.7
PSO782G0079 Papaver somniferum HOM05D006533 ORTHO05D008625 8.9e-99 364.8 331 54.7
Prupe.2G325700 Prunus persica HOM05D006533 ORTHO05D008625 8.9e-99 364.8 367 51.8
TAR374G0999 Trochodendron aralioides HOM05D006533 ORTHO05D008625 2.6e-98 363.2 355 53.2
Lj3A887G72 Lonicera japonica HOM05D006533 ORTHO05D008625 7.6e-98 361.7 354 52.5
Lsat_1_v5_gn_9_47461 Lactuca sativa HOM05D006533 ORTHO05D008625 2.9e-97 359.8 350 52.9
Ciclev10020455m.g Citrus clementina HOM05D006533 ORTHO05D008625 3.7e-97 359.4 352 51.7
Eucgr.K00088 Eucalyptus grandis HOM05D006533 ORTHO05D008625 4.9e-97 359.0 354 52.5
ECA232G2080 Erigeron canadensis HOM05D006533 ORTHO05D008625 6.4e-97 358.6 354 52.3
EL10Ac3g05080 Beta vulgaris HOM05D006533 ORTHO05D008625 3.2e-96 356.3 374 49.5
arahy.Tifrunner.gnm1.ann1.YJZS8S Arachis hypogaea HOM05D006533 ORTHO05D008625 5.4e-96 355.5 376 48.7
Psat2g188880 Pisum sativum HOM05D006533 ORTHO05D008625 1.6e-95 354.0 349 53.0
vmacro06509 Vaccinium macrocarpon HOM05D006533 ORTHO05D008625 2.1e-95 353.6 336 55.4
VMungo1215G1087 Vigna mungo HOM05D006533 ORTHO05D008625 2.1e-95 353.6 327 54.1
Aa31LG11G12640 Aethionema arabicum HOM05D006533 ORTHO05D008625 1.7e-94 350.5 353 52.4
Sc06g0002540 Simmondsia chinensis HOM05D006533 ORTHO05D008625 1.7e-94 350.5 355 51.8
THA.LOC104820882 Tarenaya hassleriana HOM05D006533 ORTHO05D008625 3.9e-94 349.4 352 51.7
AL6G27960 Arabidopsis lyrata HOM05D006533 ORTHO05D008625 1.1e-93 347.8 352 51.7
MBI04_g36026_MAGBIO Magnolia biondii HOM05D006533 ORTHO05D008625 1.1e-93 347.8 354 51.1
unitig_0.g2430 Utricularia gibba HOM05D006533 ORTHO05D008625 1.1e-93 347.8 352 48.3
Nitab4.5_0001510g0030 Nicotiana tabacum HOM05D006533 ORTHO05D008625 1.5e-93 347.4 377 49.6
Cfa006012 Carpinus fangiana HOM05D006533 ORTHO05D008625 1.2e-92 344.4 336 54.5
Nn1g01934 Nelumbo nucifera HOM05D006533 ORTHO05D008625 2.1e-92 343.6 355 50.7
Hma1.2p1_3802F.1_g337635 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 3.6e-92 342.8 336 53.0
CARHR196200 Cardamine hirsuta HOM05D006533 ORTHO05D008625 6.2e-92 342.0 353 50.4
CDE11G1068 Ceratophyllum demersum HOM05D006533 ORTHO05D004827 1.1e-91 341.3 319 54.9
Medtr5g061700 Medicago truncatula HOM05D006533 ORTHO05D008625 1.1e-91 341.3 355 51.5
Mapoly0015s0191 Marchantia polymorpha HOM05D006533 ORTHO05D008625 1.4e-91 340.9 401 46.6
Cpa.g.sc39.72 Carica papaya HOM05D006533 ORTHO05D008625 5.2e-91 339.0 332 54.2
CSS0012834 Camellia sinensis var. sinensis HOM05D006533 ORTHO05D008625 6.8e-91 338.6 355 51.0
Ah.04g156530 Amaranthus hybridus HOM05D006533 ORTHO05D008625 4.4e-90 335.9 332 52.7
HanXRQChr05g0141721 Helianthus annuus HOM05D006533 ORTHO05D008625 5.8e-90 335.5 353 49.0
Peaxi162Scf00133g00721 Petunia axillaris HOM05D006533 ORTHO05D008625 1.3e-89 334.3 359 49.9
SMO340G0278 Selaginella moellendorffii HOM05D006533 ORTHO05D008625 1.2e-87 327.8 355 45.4
Dinv17259 Davidia involucrata HOM05D006533 ORTHO05D008625 7.8e-87 325.1 312 55.1
Sabra06G0125800 Salix brachista HOM05D006533 ORTHO05D008625 2.3e-86 323.6 355 49.6
CAN.G473.117 Capsicum annuum HOM05D006533 ORTHO05D008625 3.0e-86 323.2 307 54.4
Manes.09G124800 Manihot esculenta HOM05D006533 ORTHO05D008625 3.9e-86 322.8 351 49.9
Nitab4.5_0005342g0010 Nicotiana tabacum HOM05D006533 ORTHO05D008625 4.3e-85 319.3 402 45.8
Pp3c15_5730 Physcomitrium patens HOM05D006533 ORTHO05D008625 4.3e-85 319.3 376 44.7
DCAR_009009 Daucus carota HOM05D006533 ORTHO05D008625 5.6e-85 318.9 300 56.3
LjContig00222g0024674 Lotus japonicus HOM05D006533 ORTHO05D008625 1.6e-84 317.4 299 55.2
Duzib264G0907 Durio zibethinus HOM05D006533 ORTHO05D008625 1.8e-83 313.9 354 48.3
MELO3C006767.2 Cucumis melo HOM05D006533 ORTHO05D008625 6.9e-83 312.0 371 45.8
COL.COLO4_35796 Corchorus olitorius HOM05D006533 ORTHO05D008625 7.6e-82 308.5 349 48.1
Hund09790 Selenicereus undatus HOM05D006533 ORTHO05D008625 2.9e-81 306.6 358 45.5
SalBow4G2334 Salvia bowleyana HOM05D006533 ORTHO05D008625 8.7e-78 295.0 354 44.6
Rhsim03G0221300 Rhododendron simsii HOM05D006533 ORTHO05D008625 6.2e-76 288.9 351 46.7
Hma1.2p1_0758F.1_g213747 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 3.4e-66 256.5 330 45.2
Psat2g075360 Pisum sativum HOM05D006533 ORTHO05D008625 4.5e-66 256.1 295 48.8
Hma1.2p1_0758F.1_g213741 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 3.2e-64 250.0 337 43.9
Hma1.2p1_0758F.1_g213730 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 5.5e-64 249.2 339 43.7
Hma1.2p1_0758F.1_g213704 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 4.6e-63 246.1 298 47.0
Hma1.2p1_0758F.1_g213725 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 3.9e-62 243.0 298 46.6
Hma1.2p1_0758F.1_g213746 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 3.9e-62 243.0 298 46.6
Hma1.2p1_3802F.1_g337637 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 3.9e-62 243.0 298 46.6
TPR.G22023 Trifolium pratense HOM05D006533 ORTHO05D008625 1.6e-60 237.7 163 71.2
SalBow4G1971 Salvia bowleyana HOM05D006533 ORTHO05D008625 2.4e-59 233.8 304 43.4
SEGI_31434 Sequoiadendron giganteum HOM05D006533 ORTHO05D008625 4.1e-59 233.0 188 60.6
QL09p024429 Quercus lobata HOM05D006533 ORTHO05D008625 3.4e-58 229.9 286 47.2
arahy.Tifrunner.gnm1.ann1.1W8L1U Arachis hypogaea HOM05D006533 ORTHO05D008625 3.9e-54 216.5 164 62.8
TPR.G37965 Trifolium pratense HOM05D006533 ORTHO05D008625 1.5e-53 214.5 251 46.6
CBR_g24301 Chara braunii HOM05D006533 ORTHO05D008625 2.5e-48 197.2 540 29.3
HPP92_005432 Vanilla planifolia HOM05D006533 ORTHO05D008625 2.0e-29 134.4 175 43.4
SEGI_03149 Sequoiadendron giganteum HOM05D006533 ORTHO05D008625 2.0e-26 124.4 205 38.5
MBI06_g38701_MAGBIO Magnolia biondii HOM05D006533 ORTHO05D008625 1.8e-22 111.3 116 49.1
MBI06_g38702_MAGBIO Magnolia biondii HOM05D006533 ORTHO05D008625 5.4e-19 99.8 71 63.4
MBI12_g01582_MAGBIO Magnolia biondii HOM05D006533 ORTHO05D008625 1.3e-17 95.1 115 44.3
FAN01G0029 Fragaria x ananassa HOM05D006533 ORTHO05D008625 1.5e-16 91.7 56 67.9
MBI05_g26894_MAGBIO Magnolia biondii HOM05D003110 ORTHO05D003585 2.8e-07 60.8 47 55.3


User provided reference genes

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