Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0111300 Oryza sativa ssp. japonica HOM05D006877 ORTHO05D008735 2.6e-176 622.9 551 100.0
Zm00001eb378980 Zea mays HOM05D006877 ORTHO05D008735 4.0e-92 343.2 579 74.1
TAR381G0744 Trochodendron aralioides HOM05D006877 ORTHO05D008735 1.9e-78 297.7 583 61.2
GSVIVG01024409001 Vitis vinifera HOM05D006877 ORTHO05D008735 8.2e-77 292.4 546 55.3
PSO063G6761 Papaver somniferum HOM05D006877 ORTHO05D008735 1.5e-75 288.1 217 63.6
Actinidia18704 Actinidia chinensis HOM05D006877 ORTHO05D008735 3.4e-75 287.0 216 65.3
BraA06t26685Z Brassica rapa HOM05D006877 ORTHO05D008735 4.5e-75 286.6 218 66.1
ATR0829G170 Amborella trichopoda HOM05D006877 ORTHO05D008735 1.3e-74 285.0 217 62.2
A06p37650 Brassica napus HOM05D006877 ORTHO05D008735 1.7e-74 284.6 218 65.6
C07p40570 Brassica napus HOM05D006877 ORTHO05D008735 1.7e-74 284.6 218 65.6
BolC7t44594H Brassica oleracea HOM05D006877 ORTHO05D008735 1.7e-74 284.6 218 65.6
Sp2g20510 Schrenkiella parvula HOM05D006877 ORTHO05D008735 8.4e-74 282.3 217 65.4
Prupe.2G325900 Prunus persica HOM05D006877 ORTHO05D008735 1.4e-73 281.6 217 61.8
CARHR185880 Cardamine hirsuta HOM05D006877 ORTHO05D008735 5.5e-73 279.6 217 64.1
MBI04_g20982_MAGBIO Magnolia biondii HOM05D006877 ORTHO05D008735 9.3e-73 278.9 204 65.2
Aa31LG11G9010 Aethionema arabicum HOM05D006877 ORTHO05D008735 1.8e-71 274.6 217 63.1
Sc25g0001210 Simmondsia chinensis HOM05D006877 ORTHO05D008735 6.7e-71 272.7 216 61.1
Sabra19G0059000 Salix brachista HOM05D006877 ORTHO05D008735 8.7e-71 272.3 215 61.9
AUR62002061 Chenopodium quinoa HOM05D006877 ORTHO05D008735 1.1e-70 271.9 202 65.8
MD01G1235800 Malus domestica HOM05D006877 ORTHO05D008735 1.1e-70 271.9 217 60.4
EL10Ac3g05079 Beta vulgaris HOM05D006877 ORTHO05D008735 3.3e-70 270.4 204 64.2
Potri.019G049400 Populus trichocarpa HOM05D006877 ORTHO05D008735 4.3e-70 270.0 577 64.5
Dinv17258 Davidia involucrata HOM05D006877 ORTHO05D008735 5.7e-70 269.6 205 65.4
Rhsim09G0212700 Rhododendron simsii HOM05D006877 ORTHO05D008735 9.7e-70 268.9 218 61.0
RcHm_v2.0_Chr1g0384191 Rosa chinensis HOM05D006877 ORTHO05D008735 9.7e-70 268.9 212 60.4
Ah.04g156540 Amaranthus hybridus HOM05D006877 ORTHO05D008735 6.3e-69 266.2 204 62.7
Hma1.2p1_0758F.1_g213710 Hydrangea macrophylla HOM05D006877 ORTHO05D008735 6.3e-69 266.2 202 63.4
Haze_00425 Corylus avellana HOM05D006877 ORTHO05D008735 3.1e-68 263.8 202 63.9
Thhalv10003569m.g Eutrema salsugineum HOM05D006877 ORTHO05D008735 3.1e-68 263.8 204 66.7
Lalb_Chr13g0294611 Lupinus albus HOM05D006877 ORTHO05D008735 6.9e-68 262.7 216 59.7
Ca_18009_v3 Cicer arietinum L. HOM05D006877 ORTHO05D008735 3.4e-67 260.4 204 61.8
ECA246G2862 Erigeron canadensis HOM05D006877 ORTHO05D008735 3.4e-67 260.4 201 62.7
Aqoxy3G02132 Aquilegia oxysepala HOM05D006877 ORTHO05D008735 7.7e-67 259.2 606 56.1
TWI39G0452 Tripterygium wilfordii HOM05D006877 ORTHO05D008735 7.7e-67 259.2 617 54.5
arahy.Tifrunner.gnm1.ann1.VTBJ7F Arachis hypogaea HOM05D006877 ORTHO05D008735 3.8e-66 256.9 202 62.9
arahy.Tifrunner.gnm1.ann1.G9QUK2 Arachis hypogaea HOM05D006877 ORTHO05D008735 5.0e-66 256.5 202 62.9
Psat7g076160 Pisum sativum HOM05D006877 ORTHO05D008735 3.2e-65 253.8 204 60.3
CSS0011113 Camellia sinensis var. sinensis HOM05D006877 ORTHO05D008735 7.2e-65 252.7 193 64.2
Atru.chr12.1962 Acer truncatum HOM05D006877 ORTHO05D008735 1.6e-64 251.5 198 61.1
Glyma.08G106500 Glycine max HOM05D006877 ORTHO05D008735 7.9e-64 249.2 200 62.0
VMungo0251G1190 Vigna mungo HOM05D006877 ORTHO05D008735 3.9e-63 246.9 202 60.9
Lj4g0001495 Lotus japonicus HOM05D006877 ORTHO05D008735 5.1e-63 246.5 197 62.9
QL09p024038 Quercus lobata HOM05D006877 ORTHO05D008735 6.7e-63 246.1 203 59.6
Medtr8g080940 Medicago truncatula HOM05D006877 ORTHO05D008735 9.7e-62 242.3 197 59.4
CDE03G0296 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 2.8e-61 240.7 170 66.5
THA.LOC104821701 Tarenaya hassleriana HOM05D006877 ORTHO05D008735 3.7e-61 240.4 192 62.0
AUR62028175 Chenopodium quinoa HOM05D006877 ORTHO05D008735 1.1e-60 238.8 171 67.3
FAN03G2267 Fragaria x ananassa HOM05D006877 ORTHO05D008735 1.4e-60 238.4 208 57.7
Manes.09G127200 Manihot esculenta HOM05D006877 ORTHO05D008735 2.4e-60 237.7 194 58.8
Eucgr.A02969 Eucalyptus grandis HOM05D006877 ORTHO05D008735 4.5e-59 233.4 183 61.7
Ciclev10018634m.g Citrus clementina HOM05D006877 ORTHO05D008735 1.3e-58 231.9 179 64.2
AL6G39840 Arabidopsis lyrata HOM05D006877 ORTHO05D008735 1.4e-57 228.4 217 54.8
Sed0012706 Sechium edule HOM05D006877 ORTHO05D008735 1.4e-57 228.4 186 62.4
Duzib106G0107 Durio zibethinus HOM05D006877 ORTHO05D008735 2.1e-56 224.6 169 63.3
TPR.G11966 Trifolium pratense HOM05D006877 ORTHO05D008735 1.4e-55 221.9 167 62.3
PGSC0003DMG400003143 Solanum tuberosum HOM05D006877 ORTHO05D008735 1.1e-54 218.8 162 66.7
MELO3C024733.2 Cucumis melo HOM05D006877 ORTHO05D008735 2.6e-54 217.6 168 64.3
Oeu060385.2 Olea europaea HOM05D006877 ORTHO05D008735 3.3e-54 217.2 162 65.4
SGA_v2.0_scaffold18G08509 Striga asiatica HOM05D006877 ORTHO05D008735 4.4e-54 216.9 194 55.7
MSTRG.8575 Avicennia marina HOM05D006877 ORTHO05D008735 7.4e-54 216.1 163 64.4
DCAR_020407 Daucus carota HOM05D006877 ORTHO05D008735 2.8e-53 214.2 164 62.8
Migut.F00097 Erythranthe guttata HOM05D006877 ORTHO05D008735 3.7e-53 213.8 161 66.5
Solyc03g097000.3 Solanum lycopersicum HOM05D006877 ORTHO05D008735 3.7e-53 213.8 159 66.7
Sopen03g027750 Solanum pennellii HOM05D006877 ORTHO05D008735 3.7e-53 213.8 159 66.7
CAN.G1131.10 Capsicum annuum HOM05D006877 ORTHO05D008735 4.8e-53 213.4 162 64.2
FAN01G1958 Fragaria x ananassa HOM05D006877 ORTHO05D008735 4.1e-52 210.3 162 61.7
FAN10G2126 Fragaria x ananassa HOM05D006877 ORTHO05D008735 4.1e-52 210.3 162 61.7
HanXRQChr01g0027911 Helianthus annuus HOM05D006877 ORTHO05D008735 4.1e-52 210.3 161 65.2
Nitab4.5_0000021g0490 Nicotiana tabacum HOM05D006877 ORTHO05D008735 7.0e-52 209.5 160 64.4
Nitab4.5_0011357g0010 Nicotiana tabacum HOM05D006877 ORTHO05D008735 7.0e-52 209.5 160 64.4
SalBow4G0068 Salvia bowleyana HOM05D006877 ORTHO05D008735 1.6e-51 208.4 159 66.0
SalBow4G3121 Salvia bowleyana HOM05D006877 ORTHO05D008735 1.6e-51 208.4 159 66.0
Cc03_g15580 Coffea canephora HOM05D006877 ORTHO05D008735 7.7e-51 206.1 153 66.7
PGR042G1249 Punica granatum HOM05D006877 ORTHO05D008735 7.7e-51 206.1 160 63.1
Lsat_1_v5_gn_3_600 Lactuca sativa HOM05D006877 ORTHO05D008735 1.3e-50 205.3 162 61.7
Gohir.D08G242601 Gossypium hirsutum HOM05D006877 ORTHO05D008735 2.9e-50 204.1 161 62.1
Gorai.004G258300 Gossypium raimondii HOM05D006877 ORTHO05D008735 2.9e-50 204.1 161 62.1
CsaV3_6G010140 Cucumis sativus L. HOM05D006877 ORTHO05D008735 6.5e-50 203.0 162 63.0
Nn1g01910 Nelumbo nucifera HOM05D006877 ORTHO05D008735 1.9e-49 201.4 152 66.4
ClCG02G007690 Citrullus lanatus HOM05D006877 ORTHO05D008735 1.6e-48 198.4 158 63.3
Hund27367 Selenicereus undatus HOM05D006877 ORTHO05D008735 1.6e-48 198.4 137 67.9
Gohir.A08G221900 Gossypium hirsutum HOM05D006877 ORTHO05D008735 2.1e-48 198.0 160 60.0
CANSAT21G1458 Cannabis sativa HOM05D006877 ORTHO05D008735 4.7e-48 196.8 159 60.4
COL.COLO4_11806 Corchorus olitorius HOM05D006877 ORTHO05D008735 4.8e-45 186.8 153 59.5
Lj1A1033T71 Lonicera japonica HOM05D006877 ORTHO05D008735 1.1e-44 185.7 161 60.2
Mapoly0001s0556 Marchantia polymorpha HOM05D006877 ORTHO05D008735 5.0e-42 176.8 223 45.3
Pp3c17_13520 Physcomitrium patens HOM05D006877 ORTHO05D008735 1.2e-40 172.2 197 49.7
Peaxi162Scf00745g00840 Petunia axillaris HOM05D006877 ORTHO05D008735 2.7e-40 171.0 158 58.9
HPP92_012823 Vanilla planifolia HOM05D006877 ORTHO05D008735 1.8e-39 168.3 106 72.6
vmacro22171 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 1.3e-26 125.6 83 69.9
SMO203G0003 Selaginella moellendorffii HOM05D006877 ORTHO05D008735 2.5e-25 121.3 179 41.3
AT5G27270 Arabidopsis thaliana HOM05D006877 ORTHO05D008735 1.0e-23 115.9 81 66.7
SEGI_02928 Sequoiadendron giganteum HOM05D006877 ORTHO05D008735 2.6e-22 111.3 84 58.3
Carub.0006s2526 Capsella rubella HOM05D006877 ORTHO05D008735 1.3e-21 109.0 73 69.9
FvH4_7g33960 Fragaria vesca HOM05D006877 ORTHO05D008735 9.2e-20 102.8 72 62.5
Thecc.05G213300 Theobroma cacao HOM05D006877 ORTHO05D008735 2.0e-19 101.7 73 63.0
Phvul.003G065400 Phaseolus vulgaris HOM05D006877 ORTHO05D008735 2.9e-13 81.3 60 60.0
AagrBONN_evm.TU.Sc2ySwM_362.1641 Anthoceros agrestis HOM05D006877 ORTHO05D008735 3.2e-12 77.8 108 39.8
Cpa.g.sc39.73 Carica papaya HOM05D006877 ORTHO05D008735 4.1e-12 77.4 173 30.1
MBI02_g29389_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 2.3e-10 71.6 128 31.2
CDE05G0456 Ceratophyllum demersum HOM05D002479 ORTHO05D002675 8.6e-10 69.7 132 30.3
PSO210G1488 Papaver somniferum HOM05D002479 ORTHO05D002675 8.6e-10 69.7 130 30.0
PGR004G1668 Punica granatum HOM05D002479 ORTHO05D002675 1.1e-09 69.3 105 34.3
CiPaw.05G220200 Carya illinoinensis HOM05D006877 ORTHO05D008735 1.5e-09 68.9 173 30.6
PSO528G0065 Papaver somniferum HOM05D002479 ORTHO05D002675 1.5e-09 68.9 132 28.8
ClCG01G020210 Citrullus lanatus HOM05D002479 ORTHO05D002675 1.9e-09 68.6 106 33.0
Cc01_g05460 Coffea canephora HOM05D006877 ORTHO05D008735 1.9e-09 68.6 76 42.1
PSO170G3719 Papaver somniferum HOM05D002479 ORTHO05D002675 7.3e-09 66.6 132 28.0
Sed0003943 Sechium edule HOM05D002479 ORTHO05D002675 1.2e-08 65.9 106 33.0
Rhsim05G0175800 Rhododendron simsii HOM05D002479 ORTHO05D002675 1.6e-08 65.5 131 28.2
CSS0026566 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 2.8e-08 64.7 130 27.7
CSS0032076 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 2.8e-08 64.7 130 27.7
Thhalv10020060m.g Eutrema salsugineum HOM05D002479 ORTHO05D002675 3.6e-08 64.3 97 32.0
Thecc.04G243400 Theobroma cacao HOM05D002479 ORTHO05D002675 4.7e-08 63.9 111 30.6
CARHR098950 Cardamine hirsuta HOM05D002479 ORTHO05D002675 6.2e-08 63.5 132 26.5
Aqoxy4G01360 Aquilegia oxysepala HOM05D002479 ORTHO05D002675 8.1e-08 63.2 129 27.1
AL3G37450 Arabidopsis lyrata HOM05D002479 ORTHO05D002675 1.1e-07 62.8 97 32.0
Nitab4.5_0027477g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 1.1e-07 62.8 132 27.3
TWI36G0440 Tripterygium wilfordii HOM05D002479 ORTHO05D002675 1.1e-07 62.8 135 29.6
Aa31LG8G9510 Aethionema arabicum HOM05D002479 ORTHO05D002675 1.4e-07 62.4 100 31.0
ATR0693G368 Amborella trichopoda HOM05D002479 ORTHO05D002675 1.4e-07 62.4 145 27.6
Duzib212G0327 Durio zibethinus HOM05D002479 ORTHO05D002675 1.4e-07 62.4 114 31.6
Migut.N00231 Erythranthe guttata HOM05D002479 ORTHO05D002675 1.4e-07 62.4 130 28.5
THA.LOC104808589 Tarenaya hassleriana HOM05D002479 ORTHO05D002675 1.4e-07 62.4 100 34.0
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 1.8e-07 62.0 135 25.9
Gohir.A09G221700 Gossypium hirsutum HOM05D002479 ORTHO05D002675 1.8e-07 62.0 111 30.6
Gohir.D09G223800 Gossypium hirsutum HOM05D002479 ORTHO05D002675 1.8e-07 62.0 111 30.6
Gorai.006G245300 Gossypium raimondii HOM05D002479 ORTHO05D002675 1.8e-07 62.0 111 30.6
Sp3g20700 Schrenkiella parvula HOM05D002479 ORTHO05D002675 1.8e-07 62.0 97 32.0
GSVIVG01018090001 Vitis vinifera HOM05D002479 ORTHO05D002675 1.8e-07 62.0 103 32.0
Ah.06g188680 Amaranthus hybridus HOM05D002479 ORTHO05D002675 2.3e-07 61.6 139 26.6
Ah.06g188690 Amaranthus hybridus HOM05D002479 ORTHO05D002675 2.3e-07 61.6 139 26.6
Carub.0003s2318 Capsella rubella HOM05D002479 ORTHO05D002675 2.3e-07 61.6 97 30.9
CiPaw.01G192700 Carya illinoinensis HOM05D002479 ORTHO05D002675 2.3e-07 61.6 105 32.4
HanXRQChr06g0184931 Helianthus annuus HOM05D002479 ORTHO05D002675 2.3e-07 61.6 117 27.4
MD13G1203500 Malus domestica HOM05D002479 ORTHO05D002675 2.3e-07 61.6 132 28.0
AT3G23020 Arabidopsis thaliana HOM05D002479 ORTHO05D002675 3.1e-07 61.2 100 31.0
ECA233G5632 Erigeron canadensis HOM05D003117 ORTHO05D003612 3.1e-07 61.2 117 28.2
ECA246G4149 Erigeron canadensis HOM05D002479 ORTHO05D002675 4.0e-07 60.8 135 26.7
FvH4_4g02020 Fragaria vesca HOM05D002479 ORTHO05D002675 4.0e-07 60.8 147 25.9
Atru.chr4.2287 Acer truncatum HOM05D002479 ORTHO05D002675 5.2e-07 60.5 116 28.4
ClCG08G000450 Citrullus lanatus HOM05D002479 ORTHO05D002675 5.2e-07 60.5 135 28.9
Nitab4.5_0009520g0020 Nicotiana tabacum HOM05D002479 ORTHO05D002675 5.2e-07 60.5 132 26.5
vmacro22170 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 6.8e-07 60.1 43 58.1
FAN12G1103 Fragaria x ananassa HOM05D002479 ORTHO05D002675 8.9e-07 59.7 147 25.9
FAN17G1196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 8.9e-07 59.7 116 28.4
FAN22G0099 Fragaria x ananassa HOM05D002479 ORTHO05D002675 8.9e-07 59.7 147 25.9
Actinidia06778 Actinidia chinensis HOM05D002479 ORTHO05D002675 1.2e-06 59.3 131 26.7
MELO3C033525.2 Cucumis melo HOM05D002479 ORTHO05D002675 1.2e-06 59.3 135 28.9
BcaC05g27986 Brassica carinata HOM05D002479 ORTHO05D002675 1.5e-06 58.9 94 30.9
A05p25680 Brassica napus HOM05D002479 ORTHO05D002675 1.5e-06 58.9 94 30.9
C05p39950 Brassica napus HOM05D002479 ORTHO05D002675 1.5e-06 58.9 94 30.9
BolC5t32740H Brassica oleracea HOM05D002479 ORTHO05D002675 1.5e-06 58.9 94 30.9
BraA05t21449Z Brassica rapa HOM05D002479 ORTHO05D002675 1.5e-06 58.9 94 30.9
COL.COLO4_15763 Corchorus olitorius HOM05D003117 ORTHO05D003612 1.5e-06 58.9 130 26.2
Dinv05730 Davidia involucrata HOM05D002479 ORTHO05D002675 1.5e-06 58.9 104 30.8
Ah.01g005230 Amaranthus hybridus HOM05D002479 ORTHO05D002675 2.0e-06 58.5 135 26.7
BcaB06g26423 Brassica carinata HOM05D002479 ORTHO05D002675 2.0e-06 58.5 94 29.8
TAR365G0241 Trochodendron aralioides HOM05D002479 ORTHO05D002675 2.0e-06 58.5 130 25.4
Sc19g0003840 Simmondsia chinensis HOM05D002479 ORTHO05D002675 2.6e-06 58.2 95 33.7
EL10Ac4g09674 Beta vulgaris HOM05D002479 ORTHO05D002675 3.4e-06 57.8 133 27.1
CsaV3_5G040330 Cucumis sativus L. HOM05D002479 ORTHO05D002675 3.4e-06 57.8 135 28.1
Lju1074C3T5 Lonicera japonica HOM05D002479 ORTHO05D002675 3.4e-06 57.8 119 26.9
Ciclev10004292m.g Citrus clementina HOM05D002479 ORTHO05D002675 4.4e-06 57.4 130 26.2
HanXRQChr14g0428761 Helianthus annuus HOM05D002479 ORTHO05D002675 4.4e-06 57.4 109 30.3
Lsat_1_v5_gn_5_67920 Lactuca sativa HOM05D002479 ORTHO05D002675 4.4e-06 57.4 105 28.6
Cfa008402 Carpinus fangiana HOM05D002479 ORTHO05D002675 5.8e-06 57.0 105 31.4
CARHR259090 Cardamine hirsuta HOM05D006877 ORTHO05D008735 7.5e-06 56.6 37 56.8
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 7.5e-06 56.6 148 23.6
Lalb_Chr15g0088581 Lupinus albus HOM05D002479 ORTHO05D002675 7.5e-06 56.6 129 26.4
Nn1g02530 Nelumbo nucifera HOM05D002479 ORTHO05D002675 7.5e-06 56.6 174 24.1
Sabra10G0064300 Salix brachista HOM05D002479 ORTHO05D002675 7.5e-06 56.6 116 29.3
Actinidia07832 Actinidia chinensis HOM05D002479 ORTHO05D002675 9.8e-06 56.2 108 30.6
AUR62000543 Chenopodium quinoa HOM05D002479 ORTHO05D002675 9.8e-06 56.2 133 25.6
Potri.010G078900 Populus trichocarpa HOM05D002479 ORTHO05D002675 9.8e-06 56.2 116 29.3


User provided reference genes

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