Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 7.0e-110 400.6 198 100.0
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 1.2e-85 320.1 198 75.8
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 9.3e-78 293.9 198 77.3
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 3.5e-77 292.0 194 69.1
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 3.5e-77 292.0 198 68.7
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 6.0e-77 291.2 194 69.1
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 3.0e-76 288.9 194 68.6
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 8.7e-76 287.3 194 68.6
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 6.9e-73 277.7 196 64.8
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 1.2e-72 276.9 198 62.6
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 1.5e-72 276.6 194 64.9
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 4.5e-72 275.0 194 64.9
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 1.7e-71 273.1 194 64.4
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 2.2e-71 272.7 194 64.9
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 2.4e-70 269.2 194 63.9
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 9.3e-70 267.3 198 64.6
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 2.7e-69 265.8 196 62.8
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 7.9e-69 264.2 189 62.4
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 2.3e-68 262.7 195 62.6
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 3.0e-68 262.3 196 63.8
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 5.1e-68 261.5 200 60.5
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 6.7e-68 261.2 195 62.1
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 8.7e-68 260.8 197 62.9
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 8.7e-68 260.8 197 62.9
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 8.7e-68 260.8 200 60.5
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 8.7e-68 260.8 196 63.8
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.1e-67 260.4 196 63.3
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 1.5e-67 260.0 196 62.2
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 1.9e-67 259.6 194 64.4
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 1.9e-67 259.6 200 62.5
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 3.3e-67 258.8 196 62.8
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 7.4e-67 257.7 195 61.5
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 1.3e-66 256.9 196 62.2
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 2.1e-66 256.1 197 62.4
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 3.7e-66 255.4 194 63.4
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 3.7e-66 255.4 200 57.5
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 8.1e-66 254.2 197 59.4
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.1e-65 253.8 196 61.2
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.4e-65 253.4 200 58.0
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 3.1e-65 252.3 171 70.8
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 3.1e-65 252.3 196 62.2
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 9.0e-65 250.8 197 58.9
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 9.0e-65 250.8 194 62.9
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 1.2e-64 250.4 198 58.6
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 1.5e-64 250.0 196 60.7
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.5e-64 250.0 194 61.9
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 2.0e-64 249.6 197 59.4
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.4e-64 248.8 194 61.3
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.4e-64 248.8 194 61.3
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 5.8e-64 248.1 191 59.2
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 7.6e-64 247.7 191 58.6
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.0e-63 247.3 197 58.4
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.0e-63 247.3 197 58.4
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 1.3e-63 246.9 198 60.6
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 1.3e-63 246.9 191 57.6
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 1.3e-63 246.9 193 59.6
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 6.5e-63 244.6 198 62.1
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 6.5e-63 244.6 198 57.6
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 1.1e-62 243.8 194 61.3
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.1e-62 243.8 201 57.7
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.1e-62 243.8 201 57.7
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 1.9e-62 243.0 197 57.9
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 4.2e-62 241.9 172 67.4
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 4.2e-62 241.9 221 55.2
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 7.1e-62 241.1 198 57.6
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 7.1e-62 241.1 201 57.2
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 9.3e-62 240.7 190 57.9
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.2e-61 240.4 230 55.2
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 1.6e-61 240.0 198 57.6
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 2.7e-61 239.2 195 57.9
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 2.7e-61 239.2 198 58.6
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 4.6e-61 238.4 198 56.6
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 4.6e-61 238.4 195 57.9
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 6.0e-61 238.0 198 56.6
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 7.9e-61 237.7 198 56.1
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 2.3e-60 236.1 198 56.1
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 2.3e-60 236.1 226 53.5
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 5.1e-60 235.0 192 57.3
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 6.7e-60 234.6 196 58.2
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 8.7e-60 234.2 202 55.0
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 8.7e-60 234.2 202 55.0
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 1.5e-59 233.4 195 56.9
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 1.5e-59 233.4 195 56.9
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 4.3e-59 231.9 193 58.0
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 1.6e-58 229.9 195 59.5
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 2.8e-58 229.2 193 56.0
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 2.8e-58 229.2 198 52.0
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 2.8e-58 229.2 197 55.3
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 3.7e-58 228.8 198 54.5
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 4.8e-58 228.4 193 56.0
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 6.3e-58 228.0 201 54.2
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 1.4e-57 226.9 221 52.5
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 1.4e-57 226.9 221 52.5
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 1.4e-57 226.9 248 50.0
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 3.1e-57 225.7 190 56.8
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 4.1e-57 225.3 193 56.5
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 4.1e-57 225.3 205 56.6
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 4.1e-57 225.3 195 54.9
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 2.6e-56 222.6 220 50.9
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 3.4e-56 222.2 179 59.8
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 8.4e-55 217.6 227 48.0
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 1.9e-54 216.5 263 44.9
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 9.3e-54 214.2 231 48.1
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 9.3e-54 214.2 231 48.1
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 1.2e-53 213.8 189 51.9
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 1.2e-53 213.8 227 48.9
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.6e-53 213.4 222 48.2
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 2.7e-53 212.6 194 52.6
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 3.5e-53 212.2 196 53.1
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 3.5e-53 212.2 196 53.1
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 3.5e-53 212.2 229 49.3
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 6.1e-53 211.5 193 52.8
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 6.1e-53 211.5 148 64.9
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 8.7e-52 207.6 194 52.1
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 1.3e-50 203.8 194 51.0
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 1.1e-49 200.7 147 64.6
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 2.6e-48 196.1 249 42.2
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.0e-47 194.1 199 50.3
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 3.8e-47 192.2 144 61.1
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 3.8e-47 192.2 191 50.8
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 1.9e-46 189.9 146 62.3
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 3.2e-46 189.1 143 63.6
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 7.2e-46 188.0 114 76.3
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 1.6e-45 186.8 134 63.4
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.4e-44 183.7 193 45.6
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.8e-44 183.3 198 51.5
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 4.3e-43 178.7 153 56.9
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 2.2e-42 176.4 154 56.5
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 4.1e-41 172.2 119 63.9
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 2.6e-40 169.5 189 50.3
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 4.5e-40 168.7 199 41.7
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 2.9e-39 166.0 186 46.8
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 3.8e-39 165.6 191 48.2
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 4.7e-37 158.7 145 52.4
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 7.9e-37 157.9 120 59.2
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 1.1e-35 154.1 171 49.1
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 4.4e-35 152.1 200 41.0
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 5.3e-33 145.2 153 51.0
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 2.0e-32 143.3 195 33.8
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 3.5e-32 142.5 194 40.7
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 8.5e-31 137.9 115 56.5
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 4.2e-30 135.6 147 49.0
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 5.5e-30 135.2 110 55.5
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 2.1e-29 133.3 113 54.9
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 9.7e-27 124.4 111 52.3
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 1.3e-23 114.0 202 31.7
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.8e-23 112.5 86 58.1
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 6.1e-21 105.1 78 66.7
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 4.4e-19 99.0 204 29.9
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 4.8e-18 95.5 200 34.0
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 5.4e-17 92.0 106 46.2
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.0e-15 87.8 55 74.5
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 6.8e-12 75.1 65 52.3
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.0e-11 73.6 53 64.2
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.3e-10 70.9 49 69.4
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 3.8e-07 59.3 181 26.0


User provided reference genes

Program Settings