Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 2057.7 985 100.0
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1756.1 975 84.0
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1531.9 978 72.0
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1515.0 978 71.6
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1510.7 978 71.6
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1510.0 978 71.4
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1509.2 978 71.5
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1508.0 980 71.6
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1507.7 981 71.4
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1504.2 973 71.1
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1503.4 993 70.5
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1499.2 985 70.7
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1496.9 962 72.0
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1496.1 975 71.1
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1494.6 977 72.0
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1492.2 978 70.9
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1491.9 978 70.2
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1491.1 981 70.6
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1490.7 975 71.2
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1489.6 975 70.7
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1486.5 972 70.9
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1484.5 973 70.2
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1482.2 968 70.8
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1482.2 972 71.2
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1481.1 963 71.9
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1479.9 973 70.5
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1479.5 979 70.2
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1479.2 961 70.8
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1477.6 970 70.5
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1477.2 981 71.2
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1476.8 969 71.0
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1476.1 964 70.6
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1474.1 962 70.9
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1473.8 974 70.5
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1473.8 970 70.6
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1473.4 976 70.5
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1472.2 970 70.8
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1469.9 981 69.4
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1469.1 971 71.0
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1467.6 971 70.3
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1467.2 967 70.4
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1466.8 969 70.6
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1466.4 974 69.6
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1466.4 968 69.7
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1466.1 963 70.4
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1465.3 977 69.9
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1465.3 977 69.7
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1465.3 960 70.4
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1464.1 975 70.3
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1464.1 971 70.5
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1462.6 963 70.0
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1462.2 971 70.4
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1462.2 973 69.7
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1461.4 974 70.8
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1460.3 974 69.1
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1459.1 978 69.5
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1456.8 966 69.7
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1454.9 974 70.2
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1454.5 969 70.6
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1454.5 974 70.1
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1454.5 968 69.8
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1454.1 969 69.8
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1454.1 976 69.5
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1454.1 984 69.0
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1453.7 973 70.4
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1452.6 974 69.2
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1452.2 970 68.9
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1451.0 988 68.6
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1449.1 976 69.7
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1448.0 971 69.4
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1448.0 964 70.1
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1447.6 984 68.9
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1443.7 979 68.4
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1442.6 985 67.8
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1442.2 971 69.3
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1441.8 962 68.8
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1437.9 961 70.0
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1434.9 974 68.7
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1434.9 973 68.8
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1434.1 973 69.1
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1431.8 966 69.4
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1430.6 967 68.7
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1429.1 980 67.9
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1429.1 981 68.1
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1425.6 972 68.6
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1424.1 980 67.8
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1422.1 970 68.5
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1419.4 968 69.0
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1419.1 967 68.5
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1415.2 963 68.4
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1413.7 968 68.3
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1411.0 983 67.5
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1408.7 936 69.4
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1407.1 978 67.5
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1406.7 966 69.2
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1406.0 969 68.4
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1405.2 967 68.9
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1405.2 967 68.9
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1404.0 978 68.8
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1403.3 966 67.9
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1402.1 979 66.3
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1401.7 966 68.2
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1400.6 966 67.9
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1400.6 972 68.3
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1400.2 929 69.8
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1397.1 966 68.1
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1387.9 970 68.2
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1387.9 966 67.1
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1377.8 967 67.2
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1369.0 966 67.7
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1358.6 893 70.5
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1349.3 875 70.5
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1338.9 985 65.4
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1323.1 966 65.2
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1323.1 998 63.5
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1308.5 846 70.8
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1307.4 849 70.8
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1299.6 967 65.5
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1293.9 1006 62.0
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1293.1 979 63.0
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1272.3 765 75.3
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1272.3 967 64.5
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1225.3 838 68.0
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1162.5 788 68.8
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1161.7 776 68.7
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1155.6 786 68.8
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1151.0 765 69.4
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 3.0e-302 1042.0 678 72.1
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 2.6e-298 1028.9 974 53.4
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 1.8e-291 1006.1 957 53.3
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.8e-275 953.0 962 51.0
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 3.5e-274 948.7 961 50.6
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 1.1e-269 933.7 716 63.5
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 2.1e-263 912.9 968 49.7
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 1.7e-233 813.5 917 47.5
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.4e-230 803.9 568 68.1
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.6e-194 684.1 405 74.6
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 4.4e-128 463.4 291 71.5
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 2.5e-107 394.4 343 55.4
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 1.2e-101 375.6 408 48.3
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 1.1e-97 362.5 218 77.1
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 2.0e-96 358.2 375 52.8
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 9.6e-83 312.8 194 74.2
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 5.3e-81 307.0 202 66.8
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 5.5e-78 297.0 275 54.2
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 8.1e-74 283.1 159 80.5
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 2.3e-68 265.0 212 61.3
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 4.3e-67 260.8 159 70.4
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 5.5e-62 243.8 143 74.8
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 9.3e-62 243.0 688 27.9
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 1.7e-47 195.7 378 36.2
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 4.1e-41 174.5 94 79.8
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.2e-40 172.9 901 24.1
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 2.6e-35 155.2 148 50.7
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 1.3e-34 152.9 148 54.1
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 7.2e-30 137.1 94 71.3
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 3.0e-28 131.7 92 60.9
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 2.6e-27 128.6 151 45.7
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.4e-25 122.9 88 63.6
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 1.0e-23 116.7 183 37.2
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 2.2e-23 115.5 161 38.5
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 5.5e-22 110.9 98 54.1
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 9.4e-22 110.2 183 35.0
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 1.0e-20 106.7 127 44.9
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 1.7e-15 89.4 114 45.6
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 3.8e-15 88.2 189 31.7
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 5.7e-11 74.3 70 51.4
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 9.8e-11 73.6 44 70.5
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 8.3e-10 70.5 78 47.4
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 4.6e-08 64.7 122 36.1
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 1.7e-07 62.8 25 100.0
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 6.6e-07 60.8 48 66.7


User provided reference genes

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