Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 3.3e-147 525.0 268 100.0
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 9.2e-113 410.6 263 74.1
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 2.4e-105 386.0 243 77.4
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 3.2e-97 359.0 259 67.2
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 4.2e-97 358.6 258 66.7
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 9.2e-97 357.5 258 64.0
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.1e-96 356.3 258 66.7
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 6.0e-96 354.8 258 65.9
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 7.8e-96 354.4 260 65.0
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 1.7e-95 353.2 258 65.9
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.7e-95 353.2 258 66.3
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 3.0e-95 352.4 258 65.9
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 8.7e-95 350.9 259 64.9
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 7.3e-94 347.8 258 64.7
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 1.2e-93 347.1 263 63.5
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.2e-93 347.1 258 64.7
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.6e-93 346.7 258 64.3
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 2.8e-93 345.9 258 63.6
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 2.8e-93 345.9 258 63.6
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.8e-93 345.9 258 64.3
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 4.7e-93 345.1 258 65.9
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 4.7e-93 345.1 264 64.0
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 6.2e-93 344.7 258 65.1
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 6.2e-93 344.7 259 64.5
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 8.1e-93 344.4 259 64.9
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 1.4e-92 343.6 258 64.0
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 1.4e-92 343.6 260 66.5
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.4e-92 343.6 258 63.6
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 1.8e-92 343.2 258 64.3
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.8e-92 343.2 258 64.0
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 2.4e-92 342.8 258 65.1
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 3.1e-92 342.4 258 65.5
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 5.3e-92 341.7 271 61.3
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 6.9e-92 341.3 258 65.9
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 9.0e-92 340.9 258 63.2
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 9.0e-92 340.9 258 62.4
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 1.2e-91 340.5 259 64.5
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 1.2e-91 340.5 258 63.2
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 2.0e-91 339.7 233 67.4
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 2.0e-91 339.7 258 63.6
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 2.6e-91 339.3 258 64.3
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 2.6e-91 339.3 257 65.4
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 4.4e-91 338.6 258 64.7
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 4.4e-91 338.6 264 65.2
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 5.8e-91 338.2 264 65.9
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 9.9e-91 337.4 260 65.8
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 9.9e-91 337.4 268 60.8
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 1.7e-90 336.7 258 62.4
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 1.7e-90 336.7 258 62.0
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 1.7e-90 336.7 262 61.8
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.2e-90 336.3 258 61.2
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 2.2e-90 336.3 260 65.8
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 2.2e-90 336.3 260 64.2
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 2.2e-90 336.3 259 65.6
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 2.2e-90 336.3 258 64.0
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 2.2e-90 336.3 261 62.8
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 2.9e-90 335.9 259 64.1
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 4.9e-90 335.1 264 60.2
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 4.9e-90 335.1 258 62.0
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 8.4e-90 334.3 258 64.0
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.1e-89 334.0 258 60.5
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 1.1e-89 334.0 258 60.9
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 1.1e-89 334.0 263 63.9
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 1.1e-89 334.0 258 62.4
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 1.1e-89 334.0 273 61.5
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 1.1e-89 334.0 275 60.7
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 1.4e-89 333.6 268 61.2
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 1.4e-89 333.6 264 62.1
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 1.9e-89 333.2 256 64.1
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.4e-89 332.8 258 60.5
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 2.4e-89 332.8 258 63.6
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 5.4e-89 331.6 263 62.4
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 7.1e-89 331.3 258 61.6
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 7.1e-89 331.3 266 60.5
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 2.1e-88 329.7 256 62.5
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 2.7e-88 329.3 258 60.9
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.7e-88 329.3 258 60.9
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 3.5e-88 328.9 258 59.3
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 3.5e-88 328.9 257 61.5
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 4.6e-88 328.6 258 62.4
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 6.0e-88 328.2 258 59.3
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 6.0e-88 328.2 258 62.4
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 1.0e-87 327.4 258 60.1
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 1.0e-87 327.4 258 60.1
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 1.3e-87 327.0 258 60.1
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 2.3e-87 326.2 258 59.3
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 2.3e-87 326.2 256 61.7
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 3.9e-87 325.5 258 58.5
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 3.9e-87 325.5 258 59.7
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 3.9e-87 325.5 258 60.1
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 3.9e-87 325.5 318 53.5
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 6.6e-87 324.7 264 58.0
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 6.6e-87 324.7 261 60.2
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 1.1e-86 323.9 264 58.7
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.1e-86 323.9 258 60.5
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 3.3e-86 322.4 258 59.3
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 7.3e-86 321.2 259 61.0
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 9.6e-86 320.9 294 55.8
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 1.6e-85 320.1 261 59.0
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 6.2e-85 318.2 259 58.3
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 5.3e-84 315.1 260 61.5
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 1.2e-83 313.9 235 66.0
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 1.2e-83 313.9 261 60.2
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 2.0e-83 313.2 264 60.2
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 9.9e-83 310.8 258 57.8
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 2.9e-82 309.3 258 57.4
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 1.9e-81 306.6 272 54.8
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 5.4e-81 305.1 272 55.1
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.6e-80 303.5 237 60.8
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 3.5e-80 302.4 213 67.6
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 6.0e-80 301.6 213 65.7
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 5.1e-79 298.5 257 58.0
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 6.7e-79 298.1 214 66.4
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 8.7e-79 297.7 217 65.4
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 3.3e-78 295.8 213 63.4
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 3.3e-78 295.8 257 58.8
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.3e-77 293.9 233 59.7
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 2.0e-75 286.6 213 63.8
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 5.8e-75 285.0 234 57.3
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 5.8e-75 285.0 262 55.7
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 1.3e-74 283.9 236 59.7
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.5e-73 279.6 196 65.8
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 7.9e-72 274.6 196 66.3
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 1.9e-70 270.0 196 65.3
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 5.6e-70 268.5 224 59.4
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 7.4e-70 268.1 198 68.2
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 1.8e-68 263.5 195 63.6
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 1.7e-66 256.9 181 66.3
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 5.5e-65 251.9 236 51.3
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 6.0e-64 248.4 258 48.4
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 1.4e-60 237.3 311 44.7
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 2.0e-59 233.4 171 66.1
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 4.5e-59 232.3 226 54.4
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.1e-57 227.6 362 39.5
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 1.1e-57 227.6 180 61.7
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.9e-57 226.9 235 51.1
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.3e-55 219.9 184 56.5
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 5.3e-52 208.8 180 56.1
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.2e-51 207.6 156 61.5
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.2e-49 199.5 270 43.7
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 9.4e-49 198.0 249 44.2
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 2.4e-44 183.3 219 44.3
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 2.5e-41 173.3 332 34.0
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 8.0e-40 168.3 141 58.2
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 2.2e-37 160.2 144 61.1
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.1e-36 156.4 135 57.0
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 9.1e-36 154.8 130 53.8
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 6.5e-34 148.7 271 35.4
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.9e-33 147.1 105 68.6
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 2.0e-30 137.1 97 68.0
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.4e-30 136.0 174 43.7
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.3e-26 124.4 107 55.1
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.7e-26 124.0 165 44.2
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.0e-26 122.5 141 45.4
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 4.4e-22 109.4 84 65.5
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 3.7e-21 106.3 168 41.1
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.6e-16 89.7 120 42.5
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 3.0e-15 86.7 165 36.4
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 7.5e-14 82.0 57 64.9
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 8.3e-13 78.6 56 66.1
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 1.0e-10 71.6 53 66.0
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 1.0e-10 71.6 53 66.0
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 2.1e-08 63.9 51 52.9
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 8.0e-08 62.0 56 46.4
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 5.2e-07 59.3 59 47.5


User provided reference genes

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