Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0243200 Oryza sativa ssp. japonica HOM05D005595 ORTHO05D006962 6.6e-82 307.4 161 100.0
Os05g0243100 Oryza sativa ssp. japonica HOM05D005595 ORTHO05D006962 4.8e-24 115.2 58 94.8
Os05g0243300 Oryza sativa ssp. japonica HOM05D005595 ORTHO05D006962 1.1e-23 114.0 58 94.8
Os08g0162033 Oryza sativa ssp. japonica HOM05D005595 ORTHO05D006962 1.1e-23 114.0 72 80.6
Zm00001eb365700 Zea mays HOM05D005595 ORTHO05D006962 1.4e-23 113.6 58 93.1
Ah.09g228170 Amaranthus hybridus HOM05D005595 ORTHO05D006962 1.9e-20 103.2 58 81.0
CSS0001891 Camellia sinensis var. sinensis HOM05D005595 ORTHO05D006962 3.2e-20 102.4 72 69.4
PGSC0003DMG400026415 Solanum tuberosum HOM05D005595 ORTHO05D006962 5.5e-20 101.7 58 79.3
Eucgr.J02309 Eucalyptus grandis HOM05D005595 ORTHO05D006962 9.4e-20 100.9 58 81.0
Nn1g08708 Nelumbo nucifera HOM05D005595 ORTHO05D006962 9.4e-20 100.9 58 81.0
Hund25939 Selenicereus undatus HOM05D005595 ORTHO05D006962 9.4e-20 100.9 58 81.0
HPP92_011547 Vanilla planifolia HOM05D005595 ORTHO05D006962 9.4e-20 100.9 58 81.0
Ciclev10016747m.g Citrus clementina HOM05D005595 ORTHO05D006962 1.2e-19 100.5 58 79.3
Cc07_g00580 Coffea canephora HOM05D005595 ORTHO05D006962 1.2e-19 100.5 68 67.6
FvH4_6g53020 Fragaria vesca HOM05D005595 ORTHO05D006962 1.2e-19 100.5 58 79.3
FAN05G0361 Fragaria x ananassa HOM05D005595 ORTHO05D006962 1.2e-19 100.5 58 79.3
FAN09G4421 Fragaria x ananassa HOM05D005595 ORTHO05D006962 1.2e-19 100.5 58 79.3
FAN14G1531 Fragaria x ananassa HOM05D005595 ORTHO05D006962 1.2e-19 100.5 58 79.3
LjContig00102g0027903 Lotus japonicus HOM05D005595 ORTHO05D006962 1.2e-19 100.5 58 81.0
RcHm_v2.0_Chr2g0174761 Rosa chinensis HOM05D005595 ORTHO05D006962 1.2e-19 100.5 58 79.3
Haze_14834 Corylus avellana HOM05D005595 ORTHO05D006962 1.6e-19 100.1 58 79.3
Phvul.010G007100 Phaseolus vulgaris HOM05D005595 ORTHO05D006962 1.6e-19 100.1 58 81.0
CAN.G1333.9 Capsicum annuum HOM05D005595 ORTHO05D006962 2.1e-19 99.8 58 79.3
CiPaw.03G052400 Carya illinoinensis HOM05D005595 ORTHO05D006962 2.1e-19 99.8 58 79.3
AUR62029058 Chenopodium quinoa HOM05D005595 ORTHO05D006962 2.1e-19 99.8 58 79.3
AUR62034098 Chenopodium quinoa HOM05D005595 ORTHO05D006962 2.1e-19 99.8 58 79.3
Lj3A195G12 Lonicera japonica HOM05D005595 ORTHO05D006962 2.1e-19 99.8 58 79.3
Lalb_Chr05g0227671 Lupinus albus HOM05D005595 ORTHO05D006962 2.1e-19 99.8 67 71.6
MBI10_g24386_MAGBIO Magnolia biondii HOM05D005595 ORTHO05D006962 2.1e-19 99.8 58 77.6
Nn3g20286 Nelumbo nucifera HOM05D005595 ORTHO05D006962 2.1e-19 99.8 64 73.4
Prupe.3G148400 Prunus persica HOM05D005595 ORTHO05D006962 2.1e-19 99.8 58 79.3
GSVIVG01001821001 Vitis vinifera HOM05D005595 ORTHO05D006962 2.1e-19 99.8 58 79.3
CANSAT64G2788 Cannabis sativa HOM05D005595 ORTHO05D006962 2.7e-19 99.4 58 79.3
COL.COLO4_13732 Corchorus olitorius HOM05D005595 ORTHO05D006962 2.7e-19 99.4 61 73.8
CsaV3_6G042550 Cucumis sativus L. HOM05D005595 ORTHO05D006962 2.7e-19 99.4 64 71.9
Dinv33365 Davidia involucrata HOM05D005595 ORTHO05D006962 2.7e-19 99.4 58 79.3
Duzib041G0186 Durio zibethinus HOM05D005595 ORTHO05D006962 2.7e-19 99.4 58 77.6
FvH4_4g11850 Fragaria vesca HOM05D005595 ORTHO05D006962 2.7e-19 99.4 66 72.7
Glyma.19G075200 Glycine max HOM05D005595 ORTHO05D006962 2.7e-19 99.4 64 73.4
Gohir.A05G246900 Gossypium hirsutum HOM05D005595 ORTHO05D006962 2.7e-19 99.4 58 77.6
Gohir.D05G248400 Gossypium hirsutum HOM05D005595 ORTHO05D006962 2.7e-19 99.4 58 77.6
Gorai.009G259400 Gossypium raimondii HOM05D005595 ORTHO05D006962 2.7e-19 99.4 58 77.6
Aqoxy5G03493 Aquilegia oxysepala HOM05D005595 ORTHO05D006962 3.6e-19 99.0 58 77.6
EL10Ac8g19198 Beta vulgaris HOM05D005595 ORTHO05D006962 3.6e-19 99.0 62 74.2
Ca_16345_v3 Cicer arietinum L. HOM05D005595 ORTHO05D006962 3.6e-19 99.0 67 68.7
Glyma.19G180500 Glycine max HOM05D005595 ORTHO05D006962 3.6e-19 99.0 58 79.3
QL02p072441 Quercus lobata HOM05D005595 ORTHO05D006962 3.6e-19 99.0 58 79.3
RcHm_v2.0_Chr4g0409361 Rosa chinensis HOM05D005595 ORTHO05D006962 3.6e-19 99.0 58 77.6
Solyc09g092090.4 Solanum lycopersicum HOM05D005595 ORTHO05D006962 3.6e-19 99.0 58 77.6
Sopen09g034960 Solanum pennellii HOM05D005595 ORTHO05D006962 3.6e-19 99.0 58 77.6
TWI23G0028 Tripterygium wilfordii HOM05D005595 ORTHO05D006962 3.6e-19 99.0 58 79.3
arahy.Tifrunner.gnm1.ann1.AY8PV2 Arachis hypogaea HOM05D005595 ORTHO05D006962 4.7e-19 98.6 58 77.6
arahy.Tifrunner.gnm1.ann1.HCN1MH Arachis hypogaea HOM05D005595 ORTHO05D006962 4.7e-19 98.6 58 77.6
MD17G1015300 Malus domestica HOM05D005595 ORTHO05D006962 4.7e-19 98.6 58 77.6
Peaxi162Scf00047g00333 Petunia axillaris HOM05D005595 ORTHO05D006962 4.7e-19 98.6 58 77.6
Peaxi162Scf00753g00428 Petunia axillaris HOM05D005595 ORTHO05D006962 4.7e-19 98.6 58 77.6
SGA_v2.0_scaffold154G37161 Striga asiatica HOM05D005595 ORTHO05D006962 4.7e-19 98.6 58 77.6
vmacro18324 Vaccinium macrocarpon HOM05D005595 ORTHO05D006962 4.7e-19 98.6 58 77.6
Dinv37839 Davidia involucrata HOM05D005595 ORTHO05D006962 6.1e-19 98.2 58 77.6
Migut.G01349 Erythranthe guttata HOM05D005595 ORTHO05D006962 6.1e-19 98.2 58 75.9
Manes.17G105900 Manihot esculenta HOM05D005595 ORTHO05D006962 6.1e-19 98.2 58 77.6
Nitab4.5_0000401g0090 Nicotiana tabacum HOM05D005595 ORTHO05D006962 6.1e-19 98.2 58 77.6
Nitab4.5_0006964g0020 Nicotiana tabacum HOM05D005595 ORTHO05D006962 6.1e-19 98.2 58 77.6
Potri.017G066000 Populus trichocarpa HOM05D005595 ORTHO05D006962 6.1e-19 98.2 58 77.6
PGR083G2585 Punica granatum HOM05D005595 ORTHO05D006962 6.1e-19 98.2 58 77.6
Sed0017898 Sechium edule HOM05D005595 ORTHO05D006962 6.1e-19 98.2 58 77.6
SEGI_06133 Sequoiadendron giganteum HOM05D005595 ORTHO05D006962 6.1e-19 98.2 58 75.9
SEGI_22376 Sequoiadendron giganteum HOM05D005595 ORTHO05D006962 6.1e-19 98.2 58 75.9
SGA_v2.0_scaffold47G17577 Striga asiatica HOM05D005595 ORTHO05D006962 6.1e-19 98.2 58 75.9
THA.LOC104813780 Tarenaya hassleriana HOM05D005595 ORTHO05D006962 6.1e-19 98.2 58 75.9
TAR625G0935 Trochodendron aralioides HOM05D005595 ORTHO05D006962 6.1e-19 98.2 65 73.8
HanXRQChr08g0233931 Helianthus annuus HOM05D005595 ORTHO05D006962 7.9e-19 97.8 58 75.9
SEGI_32901 Sequoiadendron giganteum HOM05D005595 ORTHO05D006962 7.9e-19 97.8 58 74.1
TAR633G2523 Trochodendron aralioides HOM05D005595 ORTHO05D006962 7.9e-19 97.8 58 77.6
Glyma.20G058200 Glycine max HOM05D005595 ORTHO05D006962 1.0e-18 97.4 58 77.6
THA.LOC104809576 Tarenaya hassleriana HOM05D005595 ORTHO05D006962 1.0e-18 97.4 58 74.1
FAN12G0063 Fragaria x ananassa HOM05D005595 ORTHO05D006962 1.4e-18 97.1 58 75.9
FAN12G0306 Fragaria x ananassa HOM05D005595 ORTHO05D006962 1.4e-18 97.1 58 75.9
Potri.001G334000 Populus trichocarpa HOM05D005595 ORTHO05D006962 1.4e-18 97.1 58 77.6
Thecc.08G161400 Theobroma cacao HOM05D005595 ORTHO05D006962 1.4e-18 97.1 58 75.9
Ca_04418_v3 Cicer arietinum L. HOM05D005595 ORTHO05D006962 1.8e-18 96.7 58 74.1
Sc18g0002160 Simmondsia chinensis HOM05D005595 ORTHO05D006962 1.8e-18 96.7 58 75.9
Lsat_1_v5_gn_4_185480 Lactuca sativa HOM05D005595 ORTHO05D006962 2.3e-18 96.3 58 74.1
TWI59G1157 Tripterygium wilfordii HOM05D005595 ORTHO05D006962 2.3e-18 96.3 69 65.2
VMungo1127G0708 Vigna mungo HOM05D005595 ORTHO05D006962 2.3e-18 96.3 58 75.9
ATR0723G078 Amborella trichopoda HOM05D005595 ORTHO05D006962 3.0e-18 95.9 57 77.2
MELO3C007496.2 Cucumis melo HOM05D005595 ORTHO05D006962 3.0e-18 95.9 58 74.1
ECA232G1699 Erigeron canadensis HOM05D005595 ORTHO05D006962 3.0e-18 95.9 58 72.4
Atru.chr6.2514 Acer truncatum HOM05D005595 ORTHO05D006962 5.1e-18 95.1 58 75.9
Psat5g104400 Pisum sativum HOM05D005595 ORTHO05D006962 5.1e-18 95.1 58 72.4
Duzib093G1178 Durio zibethinus HOM05D005595 ORTHO05D006962 6.7e-18 94.7 57 73.7
Oeu035209.1 Olea europaea HOM05D005595 ORTHO05D006962 6.7e-18 94.7 58 72.4
Aa31LG5G10920 Aethionema arabicum HOM05D005595 ORTHO05D006962 8.8e-18 94.4 58 72.4
Thhalv10021543m.g Eutrema salsugineum HOM05D005595 ORTHO05D006962 8.8e-18 94.4 58 72.4
TPR.G22469 Trifolium pratense HOM05D000829 ORTHO05D006962 8.8e-18 94.4 58 72.4
BcaNung05589 Brassica carinata HOM05D005595 ORTHO05D006962 1.1e-17 94.0 58 72.4
A03p32350 Brassica napus HOM05D005595 ORTHO05D006962 1.1e-17 94.0 58 72.4
C03p39400 Brassica napus HOM05D005595 ORTHO05D006962 1.1e-17 94.0 91 52.7
BraA03t12405Z Brassica rapa HOM05D005595 ORTHO05D006962 1.1e-17 94.0 58 72.4
Oeu013953.1 Olea europaea HOM05D005595 ORTHO05D006962 1.1e-17 94.0 58 70.7
SalBow1G1604 Salvia bowleyana HOM05D005595 ORTHO05D006962 1.1e-17 94.0 56 75.0
Sp3g00270 Schrenkiella parvula HOM05D005595 ORTHO05D006962 1.5e-17 93.6 58 70.7
Carub.0003s0027 Capsella rubella HOM05D005595 ORTHO05D006962 2.0e-17 93.2 58 70.7
AL3G10340 Arabidopsis lyrata HOM05D005595 ORTHO05D006962 2.6e-17 92.8 58 70.7
AT3G01790 Arabidopsis thaliana HOM05D005595 ORTHO05D006962 2.6e-17 92.8 58 70.7
MSTRG.15560 Avicennia marina HOM05D005595 ORTHO05D006962 2.6e-17 92.8 58 72.4
Peaxi162Scf00318g00721 Petunia axillaris HOM05D005595 ORTHO05D006962 2.6e-17 92.8 56 76.8
Medtr3g082760 Medicago truncatula HOM05D005595 ORTHO05D006962 3.3e-17 92.4 58 70.7
SHI03897 Sapria himalayana HOM05D005595 ORTHO05D006962 3.3e-17 92.4 55 80.0
PSO063G5361 Papaver somniferum HOM05D005595 ORTHO05D006962 7.4e-17 91.3 58 67.2
PSO782G0616 Papaver somniferum HOM05D005595 ORTHO05D006962 7.4e-17 91.3 58 67.2
CARHR075140 Cardamine hirsuta HOM05D005595 ORTHO05D006962 9.7e-17 90.9 58 67.2
AagrBONN_evm.TU.Sc2ySwM_344.3616 Anthoceros agrestis HOM05D005595 ORTHO05D006962 3.7e-16 89.0 58 70.7
CiPaw.04G034600 Carya illinoinensis HOM05D005595 ORTHO05D006962 4.8e-16 88.6 58 70.7
Thecc.04G030300 Theobroma cacao HOM05D005595 ORTHO05D006962 6.3e-16 88.2 58 70.7
SalBow7G1090 Salvia bowleyana HOM05D005595 ORTHO05D006962 9.1e-15 84.3 55 80.0
Mapoly0030s0026 Marchantia polymorpha HOM05D005595 ORTHO05D006962 1.5e-14 83.6 48 77.1
Pp3c1_3220 Physcomitrium patens HOM05D005595 ORTHO05D006962 2.0e-14 83.2 57 66.7
AagrBONN_evm.TU.Sc2ySwM_344.1421 Anthoceros agrestis HOM05D005595 ORTHO05D006962 2.6e-14 82.8 58 63.8
Sabra17G0059400 Salix brachista HOM05D005595 ORTHO05D006962 5.0e-13 78.6 48 70.8
Sabra17G0061400 Salix brachista HOM05D005595 ORTHO05D006962 5.0e-13 78.6 48 70.8
Cre09.g405200 Chlamydomonas reinhardtii HOM05D005595 ORTHO05D006962 1.1e-12 77.4 57 61.4
CBR_g2974 Chara braunii HOM05D005595 ORTHO05D006962 4.2e-12 75.5 54 63.0
SMO117G0155 Selaginella moellendorffii HOM05D005595 ORTHO05D006962 6.1e-11 71.6 48 60.4
Zm00001eb144650 Zea mays HOM05D005595 ORTHO05D006962 1.8e-10 70.1 39 89.7
MCO07G681 Micromonas commoda HOM05D005595 ORTHO05D006962 2.0e-09 66.6 48 56.2
CDE05G0827 Ceratophyllum demersum HOM05D005595 ORTHO05D006962 1.7e-08 63.5 37 81.1
HanXRQChr17g0550171 Helianthus annuus HOM05D005595 ORTHO05D006962 6.3e-08 61.6 36 75.0
CSS0030746 Camellia sinensis var. sinensis HOM05D005595 ORTHO05D006962 1.8e-07 60.1 36 69.4
CSS0048340 Camellia sinensis var. sinensis HOM05D005595 ORTHO05D006962 1.8e-07 60.1 35 71.4
PRCOL_00005998 Prasinoderma coloniale HOM05D005595 ORTHO05D006962 3.5e-06 55.8 36 61.1


User provided reference genes

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