Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.5e-110 402.9 205 100.0
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.3e-103 379.8 205 94.1
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 7.9e-80 300.8 200 76.0
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 5.5e-73 278.1 203 72.9
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 2.1e-72 276.2 203 72.4
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.4e-44 183.7 194 49.0
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.5e-43 180.3 195 48.2
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 2.0e-43 179.9 203 46.3
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 2.6e-43 179.5 203 47.8
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.6e-43 179.5 197 45.2
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.0e-42 177.6 196 48.0
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 2.2e-42 176.4 199 46.2
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 1.4e-41 173.7 198 46.0
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 2.5e-41 172.9 192 45.8
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 5.5e-41 171.8 191 48.2
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 5.5e-41 171.8 192 45.8
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 7.2e-41 171.4 192 44.8
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 9.4e-41 171.0 191 47.6
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.2e-40 170.6 206 45.6
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 2.1e-40 169.9 192 45.8
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 2.7e-40 169.5 192 45.3
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 2.7e-40 169.5 196 44.9
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 3.6e-40 169.1 193 45.6
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 3.6e-40 169.1 194 45.9
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.7e-40 168.7 199 45.7
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 7.9e-40 167.9 193 45.6
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 7.9e-40 167.9 192 44.3
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 2.3e-39 166.4 192 45.8
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 2.3e-39 166.4 197 45.7
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.9e-39 165.6 198 44.9
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 5.2e-39 165.2 199 44.7
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 6.7e-39 164.9 192 46.9
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 6.7e-39 164.9 198 44.4
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 8.8e-39 164.5 189 45.0
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 8.8e-39 164.5 192 46.4
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.1e-38 164.1 193 44.6
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.5e-38 163.7 192 46.4
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 2.0e-38 163.3 192 43.8
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 2.0e-38 163.3 199 45.2
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 2.6e-38 162.9 199 41.7
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 3.3e-38 162.5 198 44.4
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 4.4e-38 162.2 197 43.1
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 5.7e-38 161.8 203 44.8
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.7e-38 161.8 197 45.2
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 5.7e-38 161.8 194 44.3
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 7.4e-38 161.4 202 43.6
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 9.7e-38 161.0 194 44.3
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 1.3e-37 160.6 196 43.4
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 1.3e-37 160.6 198 42.9
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.3e-37 160.6 192 44.8
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 1.3e-37 160.6 197 43.7
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.7e-37 160.2 193 44.0
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.7e-37 160.2 195 45.6
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 2.2e-37 159.8 199 42.7
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.8e-37 159.5 191 46.1
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 3.7e-37 159.1 191 43.5
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.7e-37 159.1 198 42.9
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 3.7e-37 159.1 192 43.8
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 8.2e-37 157.9 196 42.9
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 1.8e-36 156.8 193 45.1
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 1.8e-36 156.8 198 44.4
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.4e-36 156.4 192 44.3
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 4.1e-36 155.6 187 41.7
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.1e-36 155.6 202 42.6
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 5.3e-36 155.2 187 44.4
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 5.3e-36 155.2 201 40.8
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 7.0e-36 154.8 187 44.9
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 9.1e-36 154.5 189 42.9
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 9.1e-36 154.5 195 42.1
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 9.1e-36 154.5 198 42.9
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 9.1e-36 154.5 189 43.9
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 9.1e-36 154.5 189 47.6
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 9.1e-36 154.5 192 42.7
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 9.1e-36 154.5 195 43.6
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 9.1e-36 154.5 202 43.6
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 1.2e-35 154.1 191 44.0
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.2e-35 154.1 197 44.2
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 1.6e-35 153.7 196 41.8
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 2.0e-35 153.3 196 41.8
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.0e-35 153.3 190 45.3
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 2.0e-35 153.3 197 44.2
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 2.6e-35 152.9 199 43.7
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.5e-35 152.5 199 42.7
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 4.5e-35 152.1 198 41.9
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 7.7e-35 151.4 194 38.1
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.3e-34 150.6 194 37.6
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.3e-34 150.6 193 42.0
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 1.3e-34 150.6 190 40.0
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.7e-34 150.2 193 40.9
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 2.2e-34 149.8 194 38.1
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.2e-34 149.8 197 43.1
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 2.2e-34 149.8 197 39.1
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 3.8e-34 149.1 194 38.1
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 6.5e-34 148.3 197 43.1
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 1.1e-33 147.5 197 42.6
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.9e-33 146.7 194 42.3
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.9e-33 146.7 197 42.6
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 3.2e-33 146.0 192 41.1
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 3.2e-33 146.0 198 40.9
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 4.2e-33 145.6 239 35.6
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.1e-32 143.3 198 40.4
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 2.1e-32 143.3 199 40.2
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 2.1e-32 143.3 199 40.2
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 2.1e-32 143.3 199 41.2
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 2.7e-32 142.9 199 41.2
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 3.6e-32 142.5 191 40.8
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 4.7e-32 142.1 198 40.9
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.0e-31 141.0 173 44.5
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 1.4e-31 140.6 198 37.4
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.8e-31 140.2 197 40.6
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 2.3e-31 139.8 186 37.6
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 2.3e-31 139.8 198 39.4
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 4.0e-31 139.0 191 43.5
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 6.7e-31 138.3 191 42.9
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 6.7e-31 138.3 192 39.6
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 6.7e-31 138.3 198 40.9
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 8.8e-31 137.9 191 41.4
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 8.8e-31 137.9 198 39.4
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 1.2e-30 137.5 193 43.5
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 1.2e-30 137.5 181 42.0
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 1.5e-30 137.1 200 39.0
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 2.0e-30 136.7 191 41.9
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 2.6e-30 136.3 190 36.8
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 2.6e-30 136.3 194 39.7
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 2.6e-30 136.3 195 39.0
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.6e-30 136.3 197 40.1
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 3.3e-30 136.0 191 42.4
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 4.4e-30 135.6 192 41.7
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 5.7e-30 135.2 191 42.4
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 7.5e-30 134.8 202 40.1
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.3e-29 134.0 194 39.2
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 1.7e-29 133.7 191 41.4
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 4.8e-29 132.1 185 42.2
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 6.3e-29 131.7 196 39.3
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 6.3e-29 131.7 191 42.4
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.4e-28 130.6 188 36.7
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 2.4e-28 129.8 187 37.4
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 4.1e-28 129.0 190 38.4
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.6e-27 127.1 142 46.5
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.6e-27 127.1 188 39.9
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 2.0e-27 126.7 195 39.0
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 3.5e-27 125.9 149 43.6
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 4.5e-27 125.6 194 34.5
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 5.9e-27 125.2 192 39.6
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 5.0e-26 122.1 120 50.8
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 1.1e-25 120.9 190 38.4
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.9e-25 120.2 141 44.0
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.9e-25 120.2 145 42.8
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 4.2e-25 119.0 175 39.4
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 5.5e-25 118.6 158 40.5
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 9.4e-25 117.9 177 40.7
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 2.6e-22 109.8 195 35.9
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 3.4e-22 109.4 197 33.0
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 4.4e-22 109.0 178 39.3
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 1.3e-21 107.5 166 41.6
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 1.6e-19 100.5 127 37.8
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 2.7e-19 99.8 117 45.3
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 7.7e-19 98.2 164 36.6
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.1e-16 90.1 131 38.2
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.1e-16 90.1 157 36.9
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 3.6e-16 89.4 152 38.8
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 6.1e-16 88.6 166 33.1
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.4e-15 87.4 197 31.5
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.7e-13 80.5 193 29.5
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 6.3e-13 78.6 107 42.1
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.8e-12 77.0 151 29.8
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 3.1e-12 76.3 193 31.6
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 2.1e-08 63.5 196 28.1
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 6.1e-08 62.0 200 29.5
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 8.0e-08 61.6 217 23.5
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 5.2e-07 58.9 188 27.7
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 1.5e-06 57.4 225 21.8
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 2.6e-06 56.6 83 41.0


User provided reference genes

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