Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0680300 Oryza sativa ssp. japonica HOM05D006296 ORTHO05D007777 1.6e-76 289.3 139 100.0
Zm00001eb065930 Zea mays HOM05D006296 ORTHO05D007777 6.1e-60 234.2 143 81.1
HanXRQChr01g0003901 Helianthus annuus HOM05D006296 ORTHO05D007777 1.2e-52 209.9 144 66.0
ECA247G1807 Erigeron canadensis HOM05D006296 ORTHO05D007777 1.4e-51 206.5 139 66.9
CsaV3_6G050070 Cucumis sativus L. HOM05D006296 ORTHO05D007777 5.7e-50 201.1 139 61.2
Aqoxy1G02520 Aquilegia oxysepala HOM05D006296 ORTHO05D007777 7.5e-50 200.7 107 74.8
Lsat_1_v5_gn_1_126121 Lactuca sativa HOM05D006296 ORTHO05D007777 7.5e-50 200.7 139 68.3
Cfa000430 Carpinus fangiana HOM05D006296 ORTHO05D007777 9.8e-50 200.3 139 64.7
MELO3C007289.2 Cucumis melo HOM05D006296 ORTHO05D007777 2.2e-49 199.1 139 60.4
Duzib235G1545 Durio zibethinus HOM05D006296 ORTHO05D007777 6.4e-49 197.6 139 59.7
Solyc10g009040.4 Solanum lycopersicum HOM05D006296 ORTHO05D007777 1.1e-48 196.8 142 62.0
Sopen10g004820 Solanum pennellii HOM05D006296 ORTHO05D007777 1.1e-48 196.8 142 62.0
Dinv07546 Davidia involucrata HOM05D006296 ORTHO05D007777 1.4e-48 196.4 142 62.0
Nn1g04048 Nelumbo nucifera HOM05D006296 ORTHO05D007777 1.8e-48 196.1 139 59.7
Nitab4.5_0003942g0060 Nicotiana tabacum HOM05D006296 ORTHO05D007777 4.1e-48 194.9 142 61.3
SGA_v2.0_scaffold49G18290 Striga asiatica HOM05D006296 ORTHO05D007777 4.1e-48 194.9 143 62.2
Manes.16G026200 Manihot esculenta HOM05D006296 ORTHO05D007777 5.4e-48 194.5 143 59.4
Cc02_g13190 Coffea canephora HOM05D006296 ORTHO05D007777 9.2e-48 193.7 107 71.0
Hma1.2p1_0126F.1_g059310 Hydrangea macrophylla HOM05D006296 ORTHO05D007777 1.2e-47 193.4 144 61.8
EL10Ac8g20365 Beta vulgaris HOM05D006296 ORTHO05D007777 2.0e-47 192.6 135 63.7
BcaC09g51212 Brassica carinata HOM05D006296 ORTHO05D007777 2.0e-47 192.6 139 65.5
A01p13040 Brassica napus HOM05D006296 ORTHO05D007777 2.0e-47 192.6 139 65.5
C01p15710 Brassica napus HOM05D006296 ORTHO05D007777 2.0e-47 192.6 139 65.5
BolC1t01524H Brassica oleracea HOM05D006296 ORTHO05D007777 2.0e-47 192.6 139 65.5
BraA01t01246Z Brassica rapa HOM05D006296 ORTHO05D007777 2.0e-47 192.6 139 65.5
Sp7g19880 Schrenkiella parvula HOM05D006296 ORTHO05D007777 2.0e-47 192.6 139 65.5
Duzib160G0870 Durio zibethinus HOM05D006296 ORTHO05D007777 2.7e-47 192.2 139 59.0
Nitab4.5_0013250g0030 Nicotiana tabacum HOM05D006296 ORTHO05D007777 2.7e-47 192.2 142 60.6
MSTRG.15892 Avicennia marina HOM05D006296 ORTHO05D007777 3.5e-47 191.8 142 59.2
PSO675G2929 Papaver somniferum HOM05D006296 ORTHO05D007777 3.5e-47 191.8 145 58.6
CSS0006104 Camellia sinensis var. sinensis HOM05D006296 ORTHO05D007777 4.6e-47 191.4 107 71.0
Thecc.06G189800 Theobroma cacao HOM05D006296 ORTHO05D007777 7.8e-47 190.7 134 60.4
QL05p039836 Quercus lobata HOM05D006296 ORTHO05D007777 1.0e-46 190.3 138 58.0
Hund21232 Selenicereus undatus HOM05D006296 ORTHO05D007777 1.0e-46 190.3 135 60.0
BcaC06g30674 Brassica carinata HOM05D006296 ORTHO05D007777 1.3e-46 189.9 139 65.5
Migut.M01153 Erythranthe guttata HOM05D006296 ORTHO05D007777 1.3e-46 189.9 107 72.9
Sc05g0007770 Simmondsia chinensis HOM05D006296 ORTHO05D007777 1.3e-46 189.9 137 62.8
HPP92_014805 Vanilla planifolia HOM05D006296 ORTHO05D007777 1.3e-46 189.9 142 55.6
TWI38G1090 Tripterygium wilfordii HOM05D006296 ORTHO05D007777 1.7e-46 189.5 144 57.6
BcaNung00839 Brassica carinata HOM05D006296 ORTHO05D007777 3.0e-46 188.7 141 65.2
CiPaw.10G047400 Carya illinoinensis HOM05D006296 ORTHO05D007777 3.0e-46 188.7 107 69.2
THA.LOC104812881 Tarenaya hassleriana HOM05D006296 ORTHO05D007777 3.0e-46 188.7 139 63.3
BcaNung00841 Brassica carinata HOM05D006296 ORTHO05D007777 5.0e-46 188.0 141 61.7
A03p52890 Brassica napus HOM05D006296 ORTHO05D007777 5.0e-46 188.0 139 65.5
BraA03t14365Z Brassica rapa HOM05D006296 ORTHO05D007777 5.0e-46 188.0 139 65.5
Gohir.A06G126500 Gossypium hirsutum HOM05D006296 ORTHO05D007777 8.6e-46 187.2 135 59.3
Gohir.D06G131300 Gossypium hirsutum HOM05D006296 ORTHO05D007777 8.6e-46 187.2 135 59.3
Gorai.010G153200 Gossypium raimondii HOM05D006296 ORTHO05D007777 8.6e-46 187.2 135 59.3
Eucgr.D00634 Eucalyptus grandis HOM05D006296 ORTHO05D007777 1.9e-45 186.0 139 61.9
Thhalv10026538m.g Eutrema salsugineum HOM05D006296 ORTHO05D007777 5.6e-45 184.5 139 64.7
CANSAT35G0041 Cannabis sativa HOM05D006296 ORTHO05D007777 1.6e-44 183.0 139 59.7
AL7G32220 Arabidopsis lyrata HOM05D006296 ORTHO05D007777 4.7e-44 181.4 140 59.3
Phvul.006G187000 Phaseolus vulgaris HOM05D006296 ORTHO05D007777 6.2e-44 181.0 141 56.7
Prupe.4G044900 Prunus persica HOM05D006296 ORTHO05D007777 6.2e-44 181.0 140 62.1
FvH4_3g09420 Fragaria vesca HOM05D006296 ORTHO05D007777 1.0e-43 180.3 107 66.4
Lj6g0008813 Lotus japonicus HOM05D006296 ORTHO05D007777 1.0e-43 180.3 107 67.3
Potri.004G041700 Populus trichocarpa HOM05D006296 ORTHO05D007777 1.0e-43 180.3 142 54.9
AT4G21720 Arabidopsis thaliana HOM05D006296 ORTHO05D007777 2.3e-43 179.1 140 59.3
FAN08G1739 Fragaria x ananassa HOM05D006296 ORTHO05D007777 2.3e-43 179.1 103 68.0
Glyma.07G195600 Glycine max HOM05D006296 ORTHO05D007777 2.3e-43 179.1 106 66.0
MD10G1295500 Malus domestica HOM05D006296 ORTHO05D007777 2.3e-43 179.1 141 57.4
RcHm_v2.0_Chr5g0008131 Rosa chinensis HOM05D006296 ORTHO05D007777 2.3e-43 179.1 107 66.4
arahy.Tifrunner.gnm1.ann1.6I4RI9 Arachis hypogaea HOM05D006296 ORTHO05D007777 3.1e-43 178.7 107 64.5
Glyma.13G180700 Glycine max HOM05D006296 ORTHO05D007777 3.1e-43 178.7 106 65.1
FAN21G3093 Fragaria x ananassa HOM05D006296 ORTHO05D007777 4.0e-43 178.3 107 65.4
Psat7g112640 Pisum sativum HOM05D006296 ORTHO05D007777 4.0e-43 178.3 107 62.6
Carub.0007s1968 Capsella rubella HOM05D006296 ORTHO05D007777 6.8e-43 177.6 141 58.2
CARHR228450 Cardamine hirsuta HOM05D006296 ORTHO05D007777 6.8e-43 177.6 106 65.1
MD05G1314200 Malus domestica HOM05D006296 ORTHO05D007777 8.9e-43 177.2 137 57.7
SalBow7G3743 Salvia bowleyana HOM05D006296 ORTHO05D007777 8.9e-43 177.2 173 50.3
Lalb_Chr16g0383701 Lupinus albus HOM05D006296 ORTHO05D007777 1.2e-42 176.8 107 64.5
TPR.G12044 Trifolium pratense HOM05D006296 ORTHO05D007777 1.2e-42 176.8 107 61.7
BcaNung02241 Brassica carinata HOM05D006296 ORTHO05D007777 1.5e-42 176.4 132 56.8
Ca_18536_v3 Cicer arietinum L. HOM05D006296 ORTHO05D007777 2.0e-42 176.0 105 62.9
DCAR_018474 Daucus carota HOM05D006296 ORTHO05D007777 2.0e-42 176.0 104 69.2
Aa31LG6G3700 Aethionema arabicum HOM05D006296 ORTHO05D007777 3.4e-42 175.3 158 57.0
Medtr4g088930 Medicago truncatula HOM05D006296 ORTHO05D007777 5.8e-42 174.5 107 60.7
SEGI_22799 Sequoiadendron giganteum HOM05D006296 ORTHO05D007777 9.8e-42 173.7 107 61.7
VMungo0251G3500 Vigna mungo HOM05D006296 ORTHO05D007777 2.9e-41 172.2 106 62.3
Nitab4.5_0002158g0020 Nicotiana tabacum HOM05D006296 ORTHO05D007777 3.7e-41 171.8 106 63.2
Atru.chr10.1908 Acer truncatum HOM05D006296 ORTHO05D007777 4.9e-41 171.4 103 64.1
FAN11G0154 Fragaria x ananassa HOM05D006296 ORTHO05D007777 4.9e-41 171.4 115 60.9
Peaxi162Scf00530g00219 Petunia axillaris HOM05D006296 ORTHO05D007777 1.1e-40 170.2 182 46.2
unitig_22.g6746 Utricularia gibba HOM05D006296 ORTHO05D007777 1.1e-40 170.2 107 57.9
FAN18G2724 Fragaria x ananassa HOM05D006296 ORTHO05D007777 1.9e-40 169.5 119 59.7
Nn1g06589 Nelumbo nucifera HOM05D006296 ORTHO05D007777 2.4e-40 169.1 91 72.5
PGR004G1731 Punica granatum HOM05D006296 ORTHO05D007777 2.4e-40 169.1 139 56.8
PSO541G0808 Papaver somniferum HOM05D006296 ORTHO05D007777 7.0e-40 167.5 186 46.2
Rhsim13G0176800 Rhododendron simsii HOM05D006296 ORTHO05D007777 9.2e-40 167.2 115 61.7
CiPaw.09G058300 Carya illinoinensis HOM05D006296 ORTHO05D007777 1.0e-38 163.7 139 53.2
Solyc02g078430.3 Solanum lycopersicum HOM05D006296 ORTHO05D007777 3.0e-38 162.2 106 58.5
Sopen02g023280 Solanum pennellii HOM05D006296 ORTHO05D007777 3.9e-38 161.8 106 58.5
CAN.G1164.13 Capsicum annuum HOM05D006296 ORTHO05D007777 1.1e-37 160.2 99 62.6
Sed0007841 Sechium edule HOM05D006296 ORTHO05D007777 5.6e-37 157.9 123 54.5
Migut.H01493 Erythranthe guttata HOM05D006296 ORTHO05D007777 2.8e-36 155.6 99 57.6
VMungo0540G1954 Vigna mungo HOM05D006296 ORTHO05D007777 8.1e-36 154.1 126 52.4
ATR0680G190 Amborella trichopoda HOM05D006296 ORTHO05D007777 1.8e-35 152.9 113 58.4
Oeu005074.1 Olea europaea HOM05D006296 ORTHO05D007777 2.3e-35 152.5 123 56.9
Lj2A287T56 Lonicera japonica HOM05D006296 ORTHO05D007777 5.2e-35 151.4 81 75.3
Nitab4.5_0005954g0020 Nicotiana tabacum HOM05D006296 ORTHO05D007777 4.4e-34 148.3 106 57.5
Peaxi162Scf00736g00313 Petunia axillaris HOM05D006296 ORTHO05D007777 2.2e-33 146.0 106 58.5
Ciclev10017521m.g Citrus clementina HOM05D006296 ORTHO05D007777 4.6e-31 138.3 77 70.1
arahy.Tifrunner.gnm1.ann1.F25ZWM Arachis hypogaea HOM05D006296 ORTHO05D007777 7.8e-31 137.5 77 68.8
Phvul.002G228000 Phaseolus vulgaris HOM05D006296 ORTHO05D007777 7.8e-31 137.5 106 52.8
GSVIVG01002932001 Vitis vinifera HOM05D006296 ORTHO05D007777 3.0e-30 135.6 80 67.5
Sabra11G0035100 Salix brachista HOM05D006296 ORTHO05D007777 1.6e-28 129.8 149 43.6
ClCG00G005210 Citrullus lanatus HOM05D006296 ORTHO05D007777 5.2e-27 124.8 95 57.9
ClCG01G022900 Citrullus lanatus HOM05D006296 ORTHO05D007777 5.2e-27 124.8 95 57.9
Actinidia25618 Actinidia chinensis HOM05D006296 ORTHO05D007777 6.8e-27 124.4 90 60.0
Actinidia07582 Actinidia chinensis HOM05D006296 ORTHO05D007777 4.1e-24 115.2 99 53.5
AUR62014802 Chenopodium quinoa HOM05D006296 ORTHO05D007777 4.1e-24 115.2 95 55.8
AUR62016993 Chenopodium quinoa HOM05D006296 ORTHO05D007777 4.1e-24 115.2 95 55.8
AagrBONN_evm.TU.Sc2ySwM_362.1174 Anthoceros agrestis HOM05D006296 ORTHO05D007777 2.1e-23 112.8 93 48.4
FvH4_5g20990 Fragaria vesca HOM05D006296 ORTHO05D007777 6.0e-23 111.3 72 63.9
Sabra04G0025800 Salix brachista HOM05D006296 ORTHO05D007777 1.1e-21 107.1 98 51.0
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 3.3e-21 105.5 88 51.1
CDE04G3708 Ceratophyllum demersum HOM05D006296 ORTHO05D007777 1.6e-20 103.2 98 51.0
Sed0020533 Sechium edule HOM05D006296 ORTHO05D007777 6.8e-19 97.8 95 43.2
PGSC0003DMG400022442 Solanum tuberosum HOM05D006296 ORTHO05D007777 1.3e-14 83.6 56 58.9
Haze_06487 Corylus avellana HOM05D006296 ORTHO05D007777 1.3e-09 67.0 34 76.5
PGSC0003DMG400022813 Solanum tuberosum HOM05D006296 ORTHO05D007777 5.4e-08 61.6 64 50.0
MBI18_g17001_MAGBIO Magnolia biondii HOM05D006296 ORTHO05D007777 7.1e-08 61.2 61 44.3
Cpa.g.sc27.57 Carica papaya HOM05D006296 ORTHO05D007777 1.7e-06 56.6 67 41.8
CSS0025334 Camellia sinensis var. sinensis HOM05D006296 ORTHO05D007777 3.9e-06 55.5 29 65.5


User provided reference genes

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