Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0675300 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 1.0e-160 570.1 296 100.0
Zm00001eb066370 Zea mays HOM05D003919 ORTHO05D004906 2.5e-135 485.7 295 84.7
TAR374G1487 Trochodendron aralioides HOM05D003919 ORTHO05D004906 1.4e-90 337.0 307 59.6
Aqoxy3G04259 Aquilegia oxysepala HOM05D003919 ORTHO05D004906 7.8e-89 331.3 300 56.7
PSO782G3793 Papaver somniferum HOM05D003919 ORTHO05D004906 3.9e-88 328.9 299 57.5
Nn4g24949 Nelumbo nucifera HOM05D003919 ORTHO05D004906 1.4e-85 320.5 299 56.9
FAN12G0111 Fragaria x ananassa HOM05D003919 ORTHO05D004906 3.1e-85 319.3 301 59.1
MD16G1001800 Malus domestica HOM05D003919 ORTHO05D004906 3.1e-85 319.3 299 58.5
Eucgr.J00863 Eucalyptus grandis HOM05D003919 ORTHO05D004906 4.0e-85 318.9 299 59.5
Prupe.1G347000 Prunus persica HOM05D003919 ORTHO05D004906 5.3e-85 318.5 301 57.8
FvH4_4g36870 Fragaria vesca HOM05D003919 ORTHO05D004906 9.0e-85 317.8 301 58.5
FAN17G2968 Fragaria x ananassa HOM05D003919 ORTHO05D004906 2.6e-84 316.2 301 58.1
GSVIVG01012044001 Vitis vinifera HOM05D003919 ORTHO05D004906 3.4e-84 315.8 302 57.9
FAN07G2510 Fragaria x ananassa HOM05D003919 ORTHO05D004906 9.9e-84 314.3 299 58.2
RcHm_v2.0_Chr4g0446631 Rosa chinensis HOM05D003919 ORTHO05D004906 9.9e-84 314.3 301 57.5
Dinv11717 Davidia involucrata HOM05D003919 ORTHO05D004906 1.3e-83 313.9 309 55.3
CSS0046709 Camellia sinensis var. sinensis HOM05D003919 ORTHO05D004906 6.4e-83 311.6 299 57.2
COL.COLO4_13755 Corchorus olitorius HOM05D003919 ORTHO05D004906 6.4e-83 311.6 298 56.4
Sabra05G0077100 Salix brachista HOM05D003919 ORTHO05D004906 1.1e-82 310.8 302 57.9
HanXRQChr12g0366421 Helianthus annuus HOM05D003919 ORTHO05D004906 1.9e-82 310.1 304 53.6
DCAR_026901 Daucus carota HOM05D003919 ORTHO05D004906 4.2e-82 308.9 301 56.1
Gorai.008G149000 Gossypium raimondii HOM05D003919 ORTHO05D004906 4.2e-82 308.9 299 55.2
Duzib132G0455 Durio zibethinus HOM05D003919 ORTHO05D004906 5.4e-82 308.5 299 55.2
Thecc.02G160300 Theobroma cacao HOM05D003919 ORTHO05D004906 5.4e-82 308.5 299 54.5
vmacro10894 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 5.4e-82 308.5 301 56.1
Gohir.A12G133900 Gossypium hirsutum HOM05D003919 ORTHO05D004906 7.1e-82 308.1 299 55.2
HPP92_012877 Vanilla planifolia HOM05D003919 ORTHO05D004906 1.6e-81 307.0 295 55.9
Peaxi162Scf00363g00327 Petunia axillaris HOM05D003919 ORTHO05D004906 2.1e-81 306.6 300 55.0
THA.LOC104819381 Tarenaya hassleriana HOM05D003919 ORTHO05D004906 2.1e-81 306.6 298 55.7
Nitab4.5_0003853g0030 Nicotiana tabacum HOM05D003919 ORTHO05D004906 2.7e-81 306.2 303 56.1
ClCG09G004560 Citrullus lanatus HOM05D003919 ORTHO05D004906 3.5e-81 305.8 302 55.3
Gohir.D12G137500 Gossypium hirsutum HOM05D003919 ORTHO05D004906 3.5e-81 305.8 300 56.3
ATR0618G139 Amborella trichopoda HOM05D003919 ORTHO05D004906 6.0e-81 305.1 304 56.6
ECA233G1217 Erigeron canadensis HOM05D003919 ORTHO05D004906 6.0e-81 305.1 297 54.5
Potri.005G093000 Populus trichocarpa HOM05D003919 ORTHO05D004906 7.9e-81 304.7 300 57.3
QL03p046003 Quercus lobata HOM05D003919 ORTHO05D004906 1.0e-80 304.3 309 54.7
CiPaw.05G168800 Carya illinoinensis HOM05D003919 ORTHO05D004906 1.3e-80 303.9 301 55.8
Cfa008737 Carpinus fangiana HOM05D003919 ORTHO05D004906 1.8e-80 303.5 301 55.1
Manes.04G066100 Manihot esculenta HOM05D003919 ORTHO05D004906 3.0e-80 302.8 303 57.8
Ca_30179_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 5.1e-80 302.0 302 57.0
Solyc02g014170.3 Solanum lycopersicum HOM05D003919 ORTHO05D004906 6.7e-80 301.6 302 55.3
Sopen02g003520 Solanum pennellii HOM05D003919 ORTHO05D004906 6.7e-80 301.6 302 55.3
Lsat_1_v5_gn_8_31660 Lactuca sativa HOM05D003919 ORTHO05D004906 1.1e-79 300.8 300 53.3
Nitab4.5_0000405g0050 Nicotiana tabacum HOM05D003919 ORTHO05D004906 1.5e-79 300.4 303 55.4
TWI53G0046 Tripterygium wilfordii HOM05D003919 ORTHO05D004906 1.5e-79 300.4 299 54.5
Sp2g24010 Schrenkiella parvula HOM05D003919 ORTHO05D004906 2.5e-79 299.7 301 53.5
PGR044G0490 Punica granatum HOM05D003919 ORTHO05D004906 4.3e-79 298.9 296 55.7
MELO3C023597.2 Cucumis melo HOM05D003919 ORTHO05D004906 1.3e-78 297.4 298 54.0
C07p44420 Brassica napus HOM05D003919 ORTHO05D004906 1.6e-78 297.0 299 52.5
Lj2g0026278 Lotus japonicus HOM05D003919 ORTHO05D004906 2.1e-78 296.6 299 55.5
Phvul.003G005926 Phaseolus vulgaris HOM05D003919 ORTHO05D004906 2.1e-78 296.6 301 54.8
Ciclev10030469m.g Citrus clementina HOM05D003919 ORTHO05D004906 2.8e-78 296.2 302 54.6
CsaV3_7G030590 Cucumis sativus L. HOM05D003919 ORTHO05D004906 2.8e-78 296.2 304 53.6
Lalb_Chr04g0258931 Lupinus albus HOM05D003919 ORTHO05D004906 2.8e-78 296.2 299 53.5
Glyma.09G282200 Glycine max HOM05D003919 ORTHO05D004906 3.6e-78 295.8 310 52.6
TPR.G8246 Trifolium pratense HOM05D003919 ORTHO05D004906 3.6e-78 295.8 299 55.5
AUR62017695 Chenopodium quinoa HOM05D003919 ORTHO05D004906 4.8e-78 295.4 299 53.5
Aa31LG11G2600 Aethionema arabicum HOM05D003919 ORTHO05D004906 8.1e-78 294.7 297 52.9
Medtr1g037310 Medicago truncatula HOM05D003919 ORTHO05D004906 8.1e-78 294.7 298 55.0
Glyma.20G003400 Glycine max HOM05D003919 ORTHO05D004906 1.1e-77 294.3 310 52.6
A03p46400 Brassica napus HOM05D003919 ORTHO05D004906 1.4e-77 293.9 299 52.8
CDE08G1346 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 1.8e-77 293.5 297 53.9
Thhalv10003499m.g Eutrema salsugineum HOM05D003919 ORTHO05D004906 3.1e-77 292.7 297 52.9
AT5G23110 Arabidopsis thaliana HOM05D003919 ORTHO05D004906 6.9e-77 291.6 297 52.9
BraA03t13766Z Brassica rapa HOM05D003919 ORTHO05D004906 6.9e-77 291.6 299 52.5
CARHR190420 Cardamine hirsuta HOM05D003919 ORTHO05D004906 6.9e-77 291.6 295 52.9
Haze_11754 Corylus avellana HOM05D003919 ORTHO05D004906 6.9e-77 291.6 326 51.5
Sed0027848 Sechium edule HOM05D003919 ORTHO05D004906 6.9e-77 291.6 310 50.6
AUR62015231 Chenopodium quinoa HOM05D003919 ORTHO05D004906 9.0e-77 291.2 303 53.1
Lj6A719G42 Lonicera japonica HOM05D003919 ORTHO05D004906 9.0e-77 291.2 285 54.4
Cc11_g02410 Coffea canephora HOM05D003919 ORTHO05D004906 2.6e-76 289.7 295 52.9
Carub.0006s2090 Capsella rubella HOM05D003919 ORTHO05D004906 3.4e-76 289.3 299 52.8
BolC7t44964H Brassica oleracea HOM05D003919 ORTHO05D004906 7.6e-76 288.1 315 49.5
AL6G34300 Arabidopsis lyrata HOM05D003919 ORTHO05D004906 1.3e-75 287.3 297 51.9
EL10Ac9g22945 Beta vulgaris HOM05D003919 ORTHO05D004906 1.3e-75 287.3 301 52.5
Psat6g099280 Pisum sativum HOM05D003919 ORTHO05D004906 6.4e-75 285.0 302 53.6
Rhsim09G0081500 Rhododendron simsii HOM05D003919 ORTHO05D004906 6.4e-75 285.0 290 54.1
Ah.01g012290 Amaranthus hybridus HOM05D003919 ORTHO05D004906 1.4e-74 283.9 291 53.3
Cpa.g.sc0.150 Carica papaya HOM05D003919 ORTHO05D004906 2.4e-74 283.1 302 53.3
Migut.J01108 Erythranthe guttata HOM05D003919 ORTHO05D004906 3.2e-74 282.7 306 52.0
Gohir.A12G134051 Gossypium hirsutum HOM05D003919 ORTHO05D004906 4.0e-69 265.8 287 52.6
Actinidia04322 Actinidia chinensis HOM05D003919 ORTHO05D004906 2.7e-65 253.1 276 52.2
TAR374G0021 Trochodendron aralioides HOM05D003919 ORTHO05D004906 4.8e-62 242.3 261 53.3
ECA233G4021 Erigeron canadensis HOM05D003919 ORTHO05D004906 2.4e-61 240.0 292 45.5
Dinv01184 Davidia involucrata HOM05D003919 ORTHO05D004906 2.0e-60 236.9 264 51.5
Mapoly0175s0011 Marchantia polymorpha HOM05D003919 ORTHO05D004906 3.4e-60 236.1 312 44.6
Pp3c9_15860 Physcomitrium patens HOM05D003919 ORTHO05D004906 6.5e-59 231.9 309 44.0
ECA233G3594 Erigeron canadensis HOM05D003919 ORTHO05D004906 1.5e-52 210.7 346 39.3
SMO164G0254 Selaginella moellendorffii HOM05D003919 ORTHO05D004906 2.2e-51 206.8 301 39.5
AagrBONN_evm.TU.Sc2ySwM_344.4345 Anthoceros agrestis HOM05D003919 ORTHO05D004906 4.6e-49 199.1 281 43.8
ECA233G0256 Erigeron canadensis HOM05D000006 ORTHO05D000091 1.4e-48 197.6 255 45.5
SEGI_28603 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.8e-40 170.6 240 45.8
ECA233G5658 Erigeron canadensis HOM05D003919 ORTHO05D004906 8.8e-40 168.3 229 43.2
Hund24370 Selenicereus undatus HOM05D003919 ORTHO05D004906 4.2e-34 149.4 149 55.0
AUR62015233 Chenopodium quinoa HOM05D003919 ORTHO05D004906 6.1e-33 145.6 105 63.8
HanXRQChr08g0218781 Helianthus annuus HOM05D003919 ORTHO05D004906 2.0e-28 130.6 137 51.8
SGA_v2.0_scaffold2647G54168 Striga asiatica HOM05D003919 ORTHO05D004906 7.7e-28 128.6 135 50.4
ECA233G0722 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-26 124.4 199 41.2
HanXRQChr08g0218771 Helianthus annuus HOM05D003919 ORTHO05D004906 1.2e-20 104.8 158 41.1
MELO3C004964.2 Cucumis melo HOM05D003919 ORTHO05D004906 5.5e-18 95.9 67 61.2
Cre01.g044850 Chlamydomonas reinhardtii HOM05D003919 ORTHO05D004906 2.1e-17 94.0 394 24.9
Atru.chr11.1141 Acer truncatum HOM05D002456 ORTHO05D002994 1.5e-15 87.8 135 41.5
MCO02G364 Micromonas commoda HOM05D003919 ORTHO05D004906 2.3e-08 63.9 268 27.6
Cre02.g110000 Chlamydomonas reinhardtii HOM05D038381 ORTHO05D034550 3.7e-06 56.6 50 40.0


User provided reference genes

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