Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0675101 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 0.0e+00 4774.5 2367 100.0
Zm00001eb066370 Zea mays HOM05D003919 ORTHO05D004906 0.0e+00 4081.9 2354 85.1
PSO782G3793 Papaver somniferum HOM05D003919 ORTHO05D004906 0.0e+00 2996.5 2354 62.5
Nn4g24949 Nelumbo nucifera HOM05D003919 ORTHO05D004906 0.0e+00 2993.0 2355 62.7
Atru.chr11.1166 Acer truncatum HOM05D003919 ORTHO05D004906 0.0e+00 2950.2 2355 61.7
Aqoxy3G04259 Aquilegia oxysepala HOM05D003919 ORTHO05D004906 0.0e+00 2945.6 2359 61.6
Cfa008737 Carpinus fangiana HOM05D003919 ORTHO05D004906 0.0e+00 2927.1 2354 61.7
CiPaw.05G168700 Carya illinoinensis HOM05D003919 ORTHO05D004906 0.0e+00 2913.6 2364 61.3
Duzib132G0455 Durio zibethinus HOM05D003919 ORTHO05D004906 0.0e+00 2900.2 2351 60.7
CSS0046709 Camellia sinensis var. sinensis HOM05D003919 ORTHO05D004906 0.0e+00 2899.0 2350 60.9
Thecc.02G160300 Theobroma cacao HOM05D003919 ORTHO05D004906 0.0e+00 2897.1 2351 60.6
Prupe.1G347000 Prunus persica HOM05D003919 ORTHO05D004906 0.0e+00 2896.3 2370 60.8
FvH4_4g36870 Fragaria vesca HOM05D003919 ORTHO05D004906 0.0e+00 2883.6 2353 60.7
Ciclev10030469m.g Citrus clementina HOM05D003919 ORTHO05D004906 0.0e+00 2881.3 2350 61.4
ATR0618G139 Amborella trichopoda HOM05D003919 ORTHO05D004906 0.0e+00 2876.3 2356 60.1
RcHm_v2.0_Chr4g0446631 Rosa chinensis HOM05D003919 ORTHO05D004906 0.0e+00 2875.5 2370 60.3
QL03p046003 Quercus lobata HOM05D003919 ORTHO05D004906 0.0e+00 2873.6 2352 60.9
MD16G1001800 Malus domestica HOM05D003919 ORTHO05D004906 0.0e+00 2869.3 2353 60.5
FAN17G2968 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 2867.4 2353 60.6
Gorai.008G149000 Gossypium raimondii HOM05D003919 ORTHO05D004906 0.0e+00 2864.7 2351 60.3
Gohir.D12G137500 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 2861.6 2351 60.3
Haze_11754 Corylus avellana HOM05D003919 ORTHO05D004906 0.0e+00 2861.2 2469 58.5
TWI53G0046 Tripterygium wilfordii HOM05D003919 ORTHO05D004906 0.0e+00 2853.9 2352 59.7
DCAR_026901 Daucus carota HOM05D003919 ORTHO05D004906 0.0e+00 2838.1 2348 59.5
vmacro10895 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 0.0e+00 2832.4 2437 58.8
Potri.005G093000 Populus trichocarpa HOM05D003919 ORTHO05D004906 0.0e+00 2827.0 2362 59.5
Actinidia04322 Actinidia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 2825.8 2348 59.8
Sabra05G0077100 Salix brachista HOM05D003919 ORTHO05D004906 0.0e+00 2820.4 2360 59.2
Eucgr.J00863 Eucalyptus grandis HOM05D003919 ORTHO05D004906 0.0e+00 2819.3 2349 59.9
PGR044G0490 Punica granatum HOM05D003919 ORTHO05D004906 0.0e+00 2818.5 2355 59.1
AT5G23110 Arabidopsis thaliana HOM05D003919 ORTHO05D004906 0.0e+00 2813.9 2349 59.3
THA.LOC104819381 Tarenaya hassleriana HOM05D003919 ORTHO05D004906 0.0e+00 2813.9 2352 59.1
MELO3C023597.2 Cucumis melo HOM05D003919 ORTHO05D004906 0.0e+00 2808.5 2353 59.1
Sed0027848 Sechium edule HOM05D003919 ORTHO05D004906 0.0e+00 2808.5 2354 59.6
CsaV3_7G030590 Cucumis sativus L. HOM05D003919 ORTHO05D004906 0.0e+00 2807.7 2353 58.8
AL6G34300 Arabidopsis lyrata HOM05D003919 ORTHO05D004906 0.0e+00 2801.9 2349 59.0
Carub.0006s2090 Capsella rubella HOM05D003919 ORTHO05D004906 0.0e+00 2800.0 2352 59.0
Cc11_g02410 Coffea canephora HOM05D003919 ORTHO05D004906 0.0e+00 2792.3 2358 58.7
Thhalv10003499m.g Eutrema salsugineum HOM05D003919 ORTHO05D004906 0.0e+00 2788.1 2349 58.7
Lj2g0026278 Lotus japonicus HOM05D003919 ORTHO05D004906 0.0e+00 2787.3 2357 59.4
A03p46400 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 2786.5 2349 58.8
BraA03t13766Z Brassica rapa HOM05D003919 ORTHO05D004906 0.0e+00 2786.5 2349 58.8
Glyma.20G003400 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 2784.6 2358 59.3
Hund24370 Selenicereus undatus HOM05D003919 ORTHO05D004906 0.0e+00 2782.7 2351 58.9
Ca_25292_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 0.0e+00 2781.5 2358 59.1
FAN07G2510 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 2780.0 2350 59.4
Medtr1g037310 Medicago truncatula HOM05D003919 ORTHO05D004906 0.0e+00 2778.4 2359 59.3
CARHR190420 Cardamine hirsuta HOM05D003919 ORTHO05D004906 0.0e+00 2777.7 2349 58.4
TPR.G8246 Trifolium pratense HOM05D003919 ORTHO05D004906 0.0e+00 2774.2 2360 59.1
BolC7t44964H Brassica oleracea HOM05D003919 ORTHO05D004906 0.0e+00 2767.3 2349 58.6
CDE08G0505 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 0.0e+00 2766.1 2355 58.5
Aa31LG11G2600 Aethionema arabicum HOM05D003919 ORTHO05D004906 0.0e+00 2763.8 2349 58.7
Gohir.A12G134051 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 2761.1 2351 58.7
Psat6g099280 Pisum sativum HOM05D003919 ORTHO05D004906 0.0e+00 2743.4 2386 58.1
Ah.01g012280 Amaranthus hybridus HOM05D003919 ORTHO05D004906 0.0e+00 2742.6 2356 58.1
AUR62017695 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 2741.1 2357 57.7
AUR62015231 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 2740.3 2357 57.7
CAN.G157.22 Capsicum annuum HOM05D003919 ORTHO05D004906 0.0e+00 2737.6 2348 57.4
Sp2g24010 Schrenkiella parvula HOM05D003919 ORTHO05D004906 0.0e+00 2736.4 2349 58.0
Sopen02g003520 Solanum pennellii HOM05D003919 ORTHO05D004906 0.0e+00 2733.0 2354 57.0
Migut.J01108 Erythranthe guttata HOM05D003919 ORTHO05D004906 0.0e+00 2731.8 2354 57.0
Lsat_1_v5_gn_8_31660 Lactuca sativa HOM05D003919 ORTHO05D004906 0.0e+00 2727.6 2352 58.1
ClCG09G004560 Citrullus lanatus HOM05D003919 ORTHO05D004906 0.0e+00 2724.5 2427 56.7
ECA233G1217 Erigeron canadensis HOM05D003919 ORTHO05D004906 0.0e+00 2716.8 2349 57.8
Peaxi162Scf00363g00329 Petunia axillaris HOM05D003919 ORTHO05D004906 0.0e+00 2712.6 2353 56.9
HanXRQChr12g0366421 Helianthus annuus HOM05D003919 ORTHO05D004906 0.0e+00 2708.7 2349 57.3
Rhsim09G0081500 Rhododendron simsii HOM05D003919 ORTHO05D004906 0.0e+00 2708.3 2279 59.5
SGA_v2.0_scaffold17G08205 Striga asiatica HOM05D003919 ORTHO05D004906 0.0e+00 2707.6 2363 56.9
EL10Ac9g22945 Beta vulgaris HOM05D003919 ORTHO05D004906 0.0e+00 2694.1 2363 57.4
Solyc02g014190.4 Solanum lycopersicum HOM05D003919 ORTHO05D004906 0.0e+00 2650.2 2352 56.0
TAR374G1487 Trochodendron aralioides HOM05D003919 ORTHO05D004906 0.0e+00 2538.1 2003 62.0
Glyma.09G282200 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 2514.6 2181 57.7
SEGI_11727 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 0.0e+00 2513.8 2242 55.2
FAN12G0111 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 2499.9 2353 54.9
COL.COLO4_13755 Corchorus olitorius HOM05D003919 ORTHO05D004906 0.0e+00 2439.8 2042 59.5
Manes.04G066100 Manihot esculenta HOM05D003919 ORTHO05D004906 0.0e+00 2399.0 1995 59.2
Mapoly0175s0011 Marchantia polymorpha HOM05D003919 ORTHO05D004906 0.0e+00 2307.7 2372 49.8
Pp3c9_15860 Physcomitrium patens HOM05D003919 ORTHO05D004906 0.0e+00 2283.1 2376 48.9
AagrBONN_evm.TU.Sc2ySwM_344.4345 Anthoceros agrestis HOM05D003919 ORTHO05D004906 0.0e+00 2268.8 2374 48.3
Sc06g0007940 Simmondsia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 2241.8 1957 56.9
arahy.Tifrunner.gnm1.ann1.FE7SUA Arachis hypogaea HOM05D003919 ORTHO05D004906 0.0e+00 2092.0 1770 59.8
C07p44420 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 2072.0 1849 56.1
GSVIVG01012044001 Vitis vinifera HOM05D003919 ORTHO05D004906 0.0e+00 2055.8 2349 48.4
SMO164G0254 Selaginella moellendorffii HOM05D003919 ORTHO05D004906 0.0e+00 2041.9 2356 45.2
Nitab4.5_0000405g0040 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 2008.8 2356 45.5
Nitab4.5_0003853g0020 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 1996.5 2356 45.2
Oeu055859.1 Olea europaea HOM05D003919 ORTHO05D004906 0.0e+00 1705.6 2228 42.8
Lalb_Chr04g0258931 Lupinus albus HOM05D003919 ORTHO05D004906 0.0e+00 1560.0 2355 39.2
Lj6A719G43 Lonicera japonica HOM05D003919 ORTHO05D004906 0.0e+00 1514.2 1185 62.5
Dinv11717 Davidia involucrata HOM05D003919 ORTHO05D004906 0.0e+00 1379.8 1066 63.4
Lj6C719G10 Lonicera japonica HOM05D003919 ORTHO05D004906 0.0e+00 1317.4 1112 58.2
MCO02G364 Micromonas commoda HOM05D003919 ORTHO05D004906 0.0e+00 1300.8 2595 33.9
Cpa.g.sc0.155 Carica papaya HOM05D003919 ORTHO05D004906 3.6e-301 1039.6 1098 51.3
HPP92_012909 Vanilla planifolia HOM05D003919 ORTHO05D004906 2.9e-287 993.4 697 70.6
Cre01.g044850 Chlamydomonas reinhardtii HOM05D003919 ORTHO05D004906 8.6e-279 965.3 3116 27.3
Gohir.A12G133950 Gossypium hirsutum HOM05D003919 ORTHO05D004906 1.1e-241 842.0 644 64.6
Cpa.g.sc0.156 Carica papaya HOM05D003919 ORTHO05D004906 3.6e-229 800.4 1349 36.8
SEGI_18724 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 5.5e-169 600.5 621 48.5
HPP92_012908 Vanilla planifolia HOM05D003919 ORTHO05D004906 1.6e-168 599.0 669 46.9
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 2.9e-157 561.6 762 42.4
SEGI_14080 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 3.4e-142 511.5 337 74.8
VMungo0251G1503 Vigna mungo HOM05D003919 ORTHO05D004906 3.4e-134 485.0 350 67.1
TAR374G0728 Trochodendron aralioides HOM05D003919 ORTHO05D004906 1.4e-127 463.0 313 70.6
HPP92_012876 Vanilla planifolia HOM05D003919 ORTHO05D004906 1.2e-123 449.9 1912 25.3
arahy.Tifrunner.gnm1.ann1.5S361I Arachis hypogaea HOM05D003919 ORTHO05D004906 1.0e-122 446.8 341 64.8
FAN25G1432 Fragaria x ananassa HOM05D003919 ORTHO05D004906 5.6e-113 414.5 589 41.3
FAN22G1631 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.3e-109 403.3 263 74.1
FAN14G1298 Fragaria x ananassa HOM05D003919 ORTHO05D004906 3.1e-103 382.1 831 32.0
Psat4g123280 Pisum sativum HOM05D003919 ORTHO05D004906 7.9e-99 367.5 364 49.7
MBI03_g34502_MAGBIO Magnolia biondii HOM05D003919 ORTHO05D004906 4.8e-88 331.6 239 66.9
Cpa.g.sc0.157 Carica papaya HOM05D003919 ORTHO05D004906 5.3e-87 328.2 239 64.9
Phvul.003G005926 Phaseolus vulgaris HOM05D003919 ORTHO05D004906 4.2e-84 318.5 1208 24.6
CiPaw.05G168800 Carya illinoinensis HOM05D003919 ORTHO05D004906 5.1e-82 311.6 1269 24.4
FAN27G1315 Fragaria x ananassa HOM05D003919 ORTHO05D004906 3.3e-81 308.9 454 40.7
SEGI_33576 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 9.4e-76 290.8 223 61.4
FAN04G3043 Fragaria x ananassa HOM05D003919 ORTHO05D004906 5.3e-71 275.0 208 61.1
SEGI_33076 Sequoiadendron giganteum HOM05D003919 ORTHO05D004188 9.1e-71 274.2 520 36.0
CDE08G0032 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 2.3e-58 233.0 617 26.3
CAN.G157.23 Capsicum annuum HOM05D003919 ORTHO05D004906 2.0e-57 229.9 519 29.7
Psat0s1455g0040 Pisum sativum HOM05D003919 ORTHO05D004906 2.0e-57 229.9 206 57.8
C07p44430 Brassica napus HOM05D003919 ORTHO05D004906 3.0e-42 179.5 107 81.3
MBI03_g34501_MAGBIO Magnolia biondii HOM05D003919 ORTHO05D004906 3.0e-42 179.5 107 80.4
Oeu055860.1 Olea europaea HOM05D003919 ORTHO05D004906 4.0e-42 179.1 107 82.2
HPP92_012883 Vanilla planifolia HOM05D000456 ORTHO05D004906 5.2e-42 178.7 106 79.2
COL.COLO4_13756 Corchorus olitorius HOM05D003919 ORTHO05D004906 2.0e-41 176.8 107 80.4
Gohir.A12G134001 Gossypium hirsutum HOM05D003919 ORTHO05D004906 5.7e-41 175.3 169 52.7
Cpa.g.sc0.159 Carica papaya HOM05D003919 ORTHO05D004906 7.5e-41 174.9 113 73.5
SEGI_20628 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.7e-40 173.7 156 54.5
VMungo1383G1759 Vigna mungo HOM05D003919 ORTHO05D009038 1.4e-39 170.6 215 46.5
SEGI_22186 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 2.7e-38 166.4 107 72.9
HPP92_012910 Vanilla planifolia HOM05D003919 ORTHO05D004906 1.2e-35 157.5 96 78.1
Psat1g095160 Pisum sativum HOM05D003919 ORTHO05D004906 2.1e-35 156.8 153 49.7
VMungo1383G1539 Vigna mungo HOM05D003919 ORTHO05D004906 1.1e-26 127.9 156 46.2
TAR374G1126 Trochodendron aralioides HOM05D003919 ORTHO05D036952 8.9e-26 124.8 172 36.0
GSVIVG01012339001 Vitis vinifera HOM05D003353 ORTHO05D003751 5.6e-12 79.0 152 37.5
Solyc02g014180.2 Solanum lycopersicum HOM05D003919 ORTHO05D004906 6.2e-11 75.5 454 20.9
Os04g0675200 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 1.4e-10 74.3 517 21.9
FvH4_5g39264 Fragaria vesca HOM05D000731 ORTHO05D004906 1.5e-09 70.9 46 71.7
FAN28G0606 Fragaria x ananassa HOM05D001114 ORTHO05D000940 1.5e-09 70.9 73 41.1
Ah.01g012290 Amaranthus hybridus HOM05D003919 ORTHO05D004906 2.6e-09 70.1 895 19.9
Nitab4.5_0023098g0010 Nicotiana tabacum HOM05D003919 ORTHO05D004906 2.6e-09 70.1 441 22.4
FAN08G1746 Fragaria x ananassa HOM05D003919 ORTHO05D005006 4.4e-09 69.3 46 69.6
Oeu025294.1 Olea europaea HOM05D003919 ORTHO05D036952 7.6e-09 68.6 140 29.3
Oeu055858.1 Olea europaea HOM05D003919 ORTHO05D004906 7.6e-09 68.6 398 22.4
Peaxi162Scf00363g00321 Petunia axillaris HOM05D003919 ORTHO05D004906 4.9e-08 65.9 394 22.6
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 1.9e-07 63.9 59 52.5
Psat4g139360 Pisum sativum HOM05D007669 ORTHO05D009624 7.1e-07 62.0 66 48.5
Lalb_Chr01g0013021 Lupinus albus HOM05D003919 ORTHO05D004906 2.7e-06 60.1 37 70.3
SEGI_09016 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 3.5e-06 59.7 42 59.5
Mapoly0211s0017 Marchantia polymorpha HOM05D001677 ORTHO05D001682 4.6e-06 59.3 384 22.1


User provided reference genes

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