Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0674100 Oryza sativa ssp. japonica HOM05D007345 ORTHO05D009277 1.6e-127 459.5 251 100.0
Zm00001eb066530 Zea mays HOM05D007345 ORTHO05D009277 1.5e-85 320.1 246 73.6
TAR485G0005 Trochodendron aralioides HOM05D007345 ORTHO05D009277 2.5e-56 223.0 219 54.8
TAR629G2718 Trochodendron aralioides HOM05D007345 ORTHO05D009277 3.7e-55 219.2 219 53.9
TAR629G0192 Trochodendron aralioides HOM05D007345 ORTHO05D009277 1.8e-54 216.9 219 53.9
Zm00001eb184330 Zea mays HOM05D007345 ORTHO05D009277 2.4e-54 216.5 160 75.0
Actinidia35146 Actinidia chinensis HOM05D007345 ORTHO05D009277 5.0e-52 208.8 233 53.2
CDE05G0430 Ceratophyllum demersum HOM05D007345 ORTHO05D009277 8.5e-52 208.0 217 53.0
HanXRQChr13g0409411 Helianthus annuus HOM05D007345 ORTHO05D009277 1.4e-51 207.2 219 52.5
GSVIVG01029370001 Vitis vinifera HOM05D007345 ORTHO05D009277 1.4e-51 207.2 215 53.0
Cfa017791 Carpinus fangiana HOM05D007345 ORTHO05D009277 1.9e-51 206.8 241 50.6
CiPaw.16G072000 Carya illinoinensis HOM05D007345 ORTHO05D009277 9.4e-51 204.5 240 49.6
Atru.chr9.353 Acer truncatum HOM05D007345 ORTHO05D009277 3.0e-49 199.5 228 50.0
Ciclev10021617m.g Citrus clementina HOM05D007345 ORTHO05D009277 4.4e-48 195.7 222 49.5
Dinv13291 Davidia involucrata HOM05D007345 ORTHO05D009277 4.4e-48 195.7 235 48.1
Aqoxy3G04287 Aquilegia oxysepala HOM05D007345 ORTHO05D009277 1.3e-47 194.1 229 49.8
Cpa.g.sc111.41 Carica papaya HOM05D007345 ORTHO05D009277 2.8e-47 193.0 216 50.9
PSO782G0509 Papaver somniferum HOM05D007345 ORTHO05D009277 8.2e-47 191.4 215 48.4
Phvul.002G333600 Phaseolus vulgaris HOM05D007345 ORTHO05D009277 1.8e-46 190.3 214 47.7
Glyma.05G249000 Glycine max HOM05D007345 ORTHO05D009277 3.1e-46 189.5 213 50.2
Rhsim12G0136700 Rhododendron simsii HOM05D007345 ORTHO05D009277 3.1e-46 189.5 235 50.2
Hma1.2p1_0403F.1_g145230 Hydrangea macrophylla HOM05D007345 ORTHO05D009277 4.1e-46 189.1 216 49.1
CANSAT01G1136 Cannabis sativa HOM05D007345 ORTHO05D009277 5.3e-46 188.7 229 49.8
Eucgr.H00620 Eucalyptus grandis HOM05D007345 ORTHO05D009277 5.3e-46 188.7 241 46.9
CSS0049327 Camellia sinensis var. sinensis HOM05D007345 ORTHO05D009277 7.0e-46 188.3 238 48.7
Thecc.03G072800 Theobroma cacao HOM05D007345 ORTHO05D009277 1.2e-45 187.6 242 46.3
arahy.Tifrunner.gnm1.ann1.TRXD5D Arachis hypogaea HOM05D007345 ORTHO05D009277 1.6e-45 187.2 247 45.3
arahy.Tifrunner.gnm1.ann1.X12NHK Arachis hypogaea HOM05D007345 ORTHO05D009277 1.6e-45 187.2 247 45.3
unitig_0.g26 Utricularia gibba HOM05D007345 ORTHO05D009277 2.6e-45 186.4 226 47.3
Cc00_g18760 Coffea canephora HOM05D007345 ORTHO05D009277 3.5e-45 186.0 220 49.1
HPP92_025754 Vanilla planifolia HOM05D007345 ORTHO05D009277 3.5e-45 186.0 227 50.2
Haze_18424 Corylus avellana HOM05D007345 ORTHO05D009277 4.5e-45 185.7 203 52.2
Sed0020487 Sechium edule HOM05D007345 ORTHO05D009277 4.5e-45 185.7 215 48.4
EL10Ac8g19438 Beta vulgaris HOM05D007345 ORTHO05D009277 7.7e-45 184.9 223 48.0
TWI60G0762 Tripterygium wilfordii HOM05D007345 ORTHO05D009277 7.7e-45 184.9 211 50.7
Ca_17167_v3 Cicer arietinum L. HOM05D007345 ORTHO05D009277 1.3e-44 184.1 234 45.7
Lsat_1_v5_gn_3_108980 Lactuca sativa HOM05D007345 ORTHO05D009277 1.3e-44 184.1 243 46.1
Lj5A166T75 Lonicera japonica HOM05D007345 ORTHO05D009277 1.3e-44 184.1 212 50.0
HPP92_025712 Vanilla planifolia HOM05D007345 ORTHO05D009277 1.3e-44 184.1 227 49.8
AUR62033076 Chenopodium quinoa HOM05D007345 ORTHO05D009277 2.2e-44 183.3 225 46.7
CsaV3_1G005120 Cucumis sativus L. HOM05D007345 ORTHO05D009277 2.9e-44 183.0 212 48.6
LjContig00484g0026271 Lotus japonicus HOM05D007345 ORTHO05D009277 6.5e-44 181.8 235 46.4
Sc10g0008500 Simmondsia chinensis HOM05D007345 ORTHO05D009277 6.5e-44 181.8 236 42.8
Lalb_Chr09g0330151 Lupinus albus HOM05D007345 ORTHO05D009277 8.5e-44 181.4 242 44.2
PGR083G0906 Punica granatum HOM05D007345 ORTHO05D009277 1.1e-43 181.0 237 45.1
Oeu061194.1 Olea europaea HOM05D007345 ORTHO05D009277 1.9e-43 180.3 214 46.7
Potri.015G029700 Populus trichocarpa HOM05D007345 ORTHO05D009277 1.9e-43 180.3 232 46.1
SalBow1G0799 Salvia bowleyana HOM05D007345 ORTHO05D009277 3.2e-43 179.5 241 44.4
COL.COLO4_05810 Corchorus olitorius HOM05D007345 ORTHO05D009277 5.5e-43 178.7 234 44.9
Migut.D02059 Erythranthe guttata HOM05D007345 ORTHO05D009277 5.5e-43 178.7 258 43.0
FAN18G3356 Fragaria x ananassa HOM05D007345 ORTHO05D009277 7.2e-43 178.3 236 46.2
SGA_v2.0_scaffold164G38118 Striga asiatica HOM05D007345 ORTHO05D009277 1.6e-42 177.2 218 49.1
Sopen03g029180 Solanum pennellii HOM05D007345 ORTHO05D009277 2.7e-42 176.4 217 47.9
FAN08G2921 Fragaria x ananassa HOM05D007345 ORTHO05D009277 8.0e-42 174.9 237 45.6
CAN.G1909.2 Capsicum annuum HOM05D007345 ORTHO05D009277 1.0e-41 174.5 232 44.0
Solyc03g098440.4 Solanum lycopersicum HOM05D007345 ORTHO05D009277 1.4e-41 174.1 217 47.5
RcHm_v2.0_Chr7g0177311 Rosa chinensis HOM05D007345 ORTHO05D009277 2.3e-41 173.3 233 46.4
FvH4_5g18270 Fragaria vesca HOM05D007345 ORTHO05D009277 4.0e-41 172.6 225 46.7
Medtr3g015440 Medicago truncatula HOM05D007345 ORTHO05D009277 5.2e-41 172.2 227 45.8
Sabra15G0024900 Salix brachista HOM05D007345 ORTHO05D009277 2.6e-40 169.9 217 47.0
MD06G1238300 Malus domestica HOM05D007345 ORTHO05D009277 4.4e-40 169.1 256 43.8
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 5.7e-40 168.7 230 43.5
FAN04G1809 Fragaria x ananassa HOM05D007345 ORTHO05D009277 7.5e-40 168.3 233 44.6
Nitab4.5_0004612g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000003 1.7e-39 167.2 226 45.6
AT3G17670 Arabidopsis thaliana HOM05D007345 ORTHO05D009277 2.8e-39 166.4 230 43.5
Nitab4.5_0000782g0230 Nicotiana tabacum HOM05D000001 ORTHO05D000003 6.3e-39 165.2 230 45.7
BraA05t22048Z Brassica rapa HOM05D007345 ORTHO05D009277 1.4e-38 164.1 252 41.3
Carub.0003s1739 Capsella rubella HOM05D007345 ORTHO05D009277 1.4e-38 164.1 253 41.9
ClCG04G012580 Citrullus lanatus HOM05D007345 ORTHO05D009277 2.4e-38 163.3 265 41.9
Sp3g15810 Schrenkiella parvula HOM05D007345 ORTHO05D009277 5.3e-38 162.2 246 42.7
VMungo0251G1758 Vigna mungo HOM05D007345 ORTHO05D009277 5.3e-38 162.2 249 43.0
AL3G30780 Arabidopsis lyrata HOM05D007345 ORTHO05D009277 7.0e-38 161.8 230 43.0
A05p32180 Brassica napus HOM05D007345 ORTHO05D009277 7.0e-38 161.8 252 41.3
Manes.02G214200 Manihot esculenta HOM05D007345 ORTHO05D009277 7.0e-38 161.8 236 41.1
BcaB06g25825 Brassica carinata HOM05D007345 ORTHO05D009277 1.6e-37 160.6 230 42.2
C05p48720 Brassica napus HOM05D007345 ORTHO05D009277 2.0e-37 160.2 251 40.2
BolC5t33608H Brassica oleracea HOM05D007345 ORTHO05D009277 2.0e-37 160.2 251 40.2
Nn4g24918 Nelumbo nucifera HOM05D007345 ORTHO05D009277 3.5e-37 159.5 192 51.0
CARHR093010 Cardamine hirsuta HOM05D007345 ORTHO05D009277 4.5e-37 159.1 253 41.1
Peaxi162Scf00171g00331 Petunia axillaris HOM05D007345 ORTHO05D009277 1.0e-36 157.9 233 43.3
Prupe.5G242200 Prunus persica HOM05D007345 ORTHO05D009277 1.1e-35 154.5 252 40.9
AUR62034041 Chenopodium quinoa HOM05D007345 ORTHO05D009277 1.9e-35 153.7 234 42.7
ATR0618G142 Amborella trichopoda HOM05D007345 ORTHO05D009277 4.2e-35 152.5 214 44.4
Thhalv10021436m.g Eutrema salsugineum HOM05D007345 ORTHO05D009277 5.5e-35 152.1 253 39.9
Pp3c11_25980 Physcomitrium patens HOM05D007345 ORTHO05D009277 1.6e-34 150.6 215 44.7
Mapoly0014s0070 Marchantia polymorpha HOM05D007345 ORTHO05D009277 6.8e-33 145.2 220 40.9
ECA240G0690 Erigeron canadensis HOM05D007345 ORTHO05D009277 2.8e-31 139.8 179 47.5
DCAR_023255 Daucus carota HOM05D007345 ORTHO05D009277 4.8e-31 139.0 183 43.7
CBR_g52222 Chara braunii HOM05D007345 ORTHO05D009277 7.0e-30 135.2 219 39.3
PGSC0003DMG400010180 Solanum tuberosum HOM05D007345 ORTHO05D009277 3.5e-29 132.9 312 33.0
SMO352G0035 Selaginella moellendorffii HOM05D007345 ORTHO05D009277 6.5e-28 128.6 213 38.0
Ah.09g231730 Amaranthus hybridus HOM05D007345 ORTHO05D009277 3.2e-27 126.3 215 37.2
AagrBONN_evm.TU.Sc2ySwM_117.2683 Anthoceros agrestis HOM05D007345 ORTHO05D009277 1.8e-25 120.6 166 45.8
PSO063G1698 Papaver somniferum HOM05D007345 ORTHO05D009277 6.8e-25 118.6 232 35.3
Lj9C350T12 Lonicera japonica HOM05D000001 ORTHO05D009373 6.3e-23 112.1 160 46.9
SEGI_13495 Sequoiadendron giganteum HOM05D007345 ORTHO05D009277 8.3e-23 111.7 183 41.0
vmacro16392 Vaccinium macrocarpon HOM05D007345 ORTHO05D009277 1.1e-22 111.3 431 26.0
FAN13G2172 Fragaria x ananassa HOM05D007345 ORTHO05D009277 2.7e-21 106.7 147 42.9
MELO3C001950.2 Cucumis melo HOM05D007345 ORTHO05D009277 9.5e-19 98.2 166 43.4
Eucgr.H00622 Eucalyptus grandis HOM05D007345 ORTHO05D009277 1.2e-18 97.8 98 48.0
CAN.G1635.20 Capsicum annuum HOM05D007345 ORTHO05D009277 6.1e-18 95.5 217 34.1
Psat7g000360 Pisum sativum HOM05D007345 ORTHO05D009277 2.0e-16 90.5 151 44.4
MSTRG.9709 Avicennia marina HOM05D007345 ORTHO05D009277 3.0e-12 76.6 141 39.7
Cre16.g674534 Chlamydomonas reinhardtii HOM05D007345 ORTHO05D009277 8.6e-12 75.1 221 30.3
PRCOL_00001636 Prasinoderma coloniale HOM05D007345 ORTHO05D009277 4.4e-08 62.8 46 56.5
CBR_g30800 Chara braunii HOM05D001916 ORTHO05D003272 5.4e-06 55.8 87 35.6
PRCOL_00005247 Prasinoderma coloniale HOM05D006451 ORTHO05D001755 9.2e-06 55.1 88 37.5


User provided reference genes

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