Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 6.6e-275 950.3 551 100.0
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 3.1e-200 702.2 555 74.6
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 4.2e-152 542.3 479 69.1
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 3.3e-101 373.2 569 45.7
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 1.9e-96 357.5 562 42.3
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 1.2e-95 354.8 565 41.2
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 6.1e-95 352.4 576 40.8
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 1.8e-94 350.9 560 43.2
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 2.6e-93 347.1 573 42.9
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 3.4e-93 346.7 541 48.1
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 1.7e-92 344.4 521 49.1
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 2.8e-92 343.6 570 39.8
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 4.8e-92 342.8 566 44.5
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 6.3e-92 342.4 572 41.1
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.1e-91 341.7 570 39.6
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.8e-91 340.9 583 41.0
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 1.8e-91 340.9 562 44.3
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 1.8e-91 340.9 567 43.4
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 2.4e-91 340.5 563 41.9
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 5.4e-91 339.3 559 44.4
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 9.1e-91 338.6 539 48.4
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 9.1e-91 338.6 596 44.5
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 9.1e-91 338.6 550 43.1
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 1.6e-90 337.8 539 48.4
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.0e-90 337.4 539 46.4
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 2.7e-90 337.0 563 42.1
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 5.9e-90 335.9 543 44.2
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.7e-89 334.3 564 43.6
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 4.2e-88 329.7 561 42.1
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 5.5e-88 329.3 544 44.3
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 9.5e-88 328.6 577 44.4
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 2.8e-87 327.0 544 41.2
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 1.0e-86 325.1 551 39.6
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 4.0e-86 323.2 567 40.2
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 8.9e-86 322.0 565 40.9
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 8.9e-86 322.0 541 43.4
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 1.2e-85 321.6 560 38.9
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 1.5e-85 321.2 568 41.5
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 1.5e-85 321.2 536 38.6
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 4.4e-85 319.7 555 42.9
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 5.7e-85 319.3 529 39.9
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 7.5e-85 318.9 568 40.7
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 7.5e-85 318.9 535 41.7
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 1.3e-84 318.2 552 42.4
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 2.8e-84 317.0 549 41.5
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 3.7e-84 316.6 558 43.4
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 4.9e-84 316.2 571 39.1
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 6.3e-84 315.8 539 42.7
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 6.3e-84 315.8 564 40.6
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 8.3e-84 315.5 571 39.1
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 8.3e-84 315.5 570 38.1
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 8.3e-84 315.5 562 40.9
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 2.4e-83 313.9 599 42.7
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 2.4e-83 313.9 556 41.2
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 3.1e-83 313.5 573 41.9
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 5.4e-83 312.8 562 44.5
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 9.2e-83 312.0 530 37.0
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 2.0e-82 310.8 583 39.3
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 3.5e-82 310.1 564 40.4
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 3.5e-82 310.1 557 36.8
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 4.5e-82 309.7 578 37.9
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 2.9e-81 307.0 560 42.9
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 6.6e-81 305.8 564 37.2
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 2.5e-80 303.9 542 38.6
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 5.6e-80 302.8 568 43.0
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 2.8e-79 300.4 559 39.4
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 3.6e-79 300.1 535 39.1
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 3.6e-79 300.1 609 37.6
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 6.1e-79 299.3 562 42.2
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 6.1e-79 299.3 580 38.4
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 8.0e-79 298.9 544 36.9
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 1.8e-78 297.7 579 38.9
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 1.8e-78 297.7 535 38.5
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 2.3e-78 297.4 550 36.4
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 3.0e-78 297.0 573 40.5
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 1.5e-77 294.7 535 37.8
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 1.5e-77 294.7 578 39.8
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 4.4e-77 293.1 536 37.7
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 7.5e-77 292.4 531 38.2
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 1.3e-76 291.6 538 37.9
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 2.9e-76 290.4 545 39.1
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 1.1e-75 288.5 544 37.1
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 4.1e-75 286.6 578 38.9
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 4.1e-75 286.6 575 41.2
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 4.1e-75 286.6 547 35.8
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 4.1e-75 286.6 577 36.9
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 5.4e-75 286.2 534 36.0
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 7.0e-75 285.8 545 35.8
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 7.0e-75 285.8 614 35.5
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 2.0e-74 284.3 547 36.0
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 4.6e-74 283.1 580 38.1
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.5e-72 278.1 601 39.1
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 2.5e-72 277.3 580 41.0
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 2.5e-72 277.3 589 40.4
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 2.8e-71 273.9 549 41.0
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.1e-70 271.9 558 36.4
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 1.4e-70 271.6 584 40.6
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 4.1e-67 260.0 547 38.0
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 5.4e-67 259.6 599 37.7
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 7.0e-67 259.2 606 37.5
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 1.5e-64 251.5 711 31.8
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 7.3e-64 249.2 548 35.6
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 8.1e-63 245.7 660 36.4
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 1.1e-62 245.4 569 35.3
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 5.2e-62 243.0 491 35.2
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 4.4e-61 240.0 511 34.2
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 5.8e-61 239.6 447 34.5
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 1.1e-59 235.3 461 35.6
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 1.1e-56 225.3 588 32.3
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 1.1e-56 225.3 297 44.4
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 3.3e-56 223.8 536 33.8
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 4.3e-56 223.4 501 33.7
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 7.3e-56 222.6 442 36.2
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 6.4e-52 209.5 552 31.5
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 9.2e-51 205.7 296 39.9
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 6.6e-49 199.5 500 31.2
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 2.1e-47 194.5 544 32.4
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 2.8e-47 194.1 626 32.9
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 5.4e-43 179.9 565 33.6
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 4.6e-42 176.8 340 44.1
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 5.8e-37 159.8 527 28.1
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.9e-35 154.8 696 25.3
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 3.2e-35 154.1 215 40.5
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 9.3e-35 152.5 686 25.5
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 6.0e-34 149.8 269 36.4
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 9.6e-32 142.5 161 55.9
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.1e-30 139.0 284 32.4
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 3.4e-29 134.0 474 27.4
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 9.3e-27 125.9 279 34.1
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 2.7e-26 124.4 178 47.8
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 3.5e-26 124.0 297 31.6
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 6.2e-23 113.2 537 26.3
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 3.8e-20 104.0 168 36.9
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 1.9e-19 101.7 249 32.9
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 3.5e-18 97.4 142 39.4
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 2.0e-13 81.6 123 45.5
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 3.8e-12 77.4 166 33.7
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 2.1e-10 71.6 142 35.9
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 3.9e-09 67.4 73 49.3
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 3.9e-09 67.4 73 49.3


User provided reference genes

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