Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 1.4e-213 746.5 549 100.0
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 1.5e-24 118.6 319 31.0
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 3.4e-21 107.5 223 31.4
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 8.4e-20 102.8 219 34.2
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 1.9e-19 101.7 317 27.4
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.9e-19 101.7 224 31.2
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.9e-19 101.7 224 31.2
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 2.4e-19 101.3 317 28.1
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 4.2e-19 100.5 240 30.4
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 5.5e-19 100.1 319 26.0
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 5.5e-19 100.1 314 28.7
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 9.3e-19 99.4 317 26.8
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 9.3e-19 99.4 216 31.0
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 9.3e-19 99.4 216 31.0
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 1.2e-18 99.0 240 30.8
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 1.6e-18 98.6 216 30.6
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 2.1e-18 98.2 204 32.4
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 2.1e-18 98.2 317 26.8
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 2.7e-18 97.8 216 30.6
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 2.7e-18 97.8 216 31.0
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 3.5e-18 97.4 226 29.6
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 3.5e-18 97.4 226 29.6
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 3.5e-18 97.4 317 26.8
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 3.5e-18 97.4 317 25.6
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 4.6e-18 97.1 317 27.1
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 4.6e-18 97.1 318 26.7
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 4.6e-18 97.1 218 30.7
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 4.6e-18 97.1 218 31.2
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 6.0e-18 96.7 311 26.4
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 6.0e-18 96.7 317 26.2
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 7.9e-18 96.3 318 26.7
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 1.0e-17 95.9 317 27.4
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 1.0e-17 95.9 322 27.3
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.0e-17 95.9 319 27.9
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 1.3e-17 95.5 216 28.7
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 1.3e-17 95.5 216 28.7
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 1.3e-17 95.5 316 27.2
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 1.3e-17 95.5 196 32.1
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.3e-17 95.5 226 28.8
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 1.8e-17 95.1 316 26.9
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 1.8e-17 95.1 317 27.1
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 2.3e-17 94.7 220 31.4
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 2.3e-17 94.7 317 25.9
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 3.0e-17 94.4 316 26.9
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 3.9e-17 94.0 316 26.9
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 3.9e-17 94.0 216 30.6
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 5.1e-17 93.6 316 25.9
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 5.1e-17 93.6 318 25.8
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 6.7e-17 93.2 225 28.0
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 6.7e-17 93.2 216 27.8
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 6.7e-17 93.2 316 25.3
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 6.7e-17 93.2 218 29.8
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 6.7e-17 93.2 216 30.1
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 6.7e-17 93.2 226 27.9
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 8.7e-17 92.8 228 29.4
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 8.7e-17 92.8 300 28.3
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 8.7e-17 92.8 316 26.3
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 1.5e-16 92.0 316 26.6
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 1.5e-16 92.0 224 29.0
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 1.5e-16 92.0 216 29.2
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.9e-16 91.7 317 26.2
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 1.9e-16 91.7 228 27.6
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 2.5e-16 91.3 317 26.2
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 2.5e-16 91.3 228 27.2
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 2.5e-16 91.3 318 26.7
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 3.3e-16 90.9 316 26.6
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 4.3e-16 90.5 247 27.9
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 4.3e-16 90.5 218 29.4
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 4.3e-16 90.5 301 24.9
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 5.6e-16 90.1 225 28.0
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 7.4e-16 89.7 312 26.3
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 9.6e-16 89.4 247 27.1
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 1.3e-15 89.0 216 27.3
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 1.3e-15 89.0 317 26.2
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 1.6e-15 88.6 216 27.3
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 1.6e-15 88.6 218 29.8
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 2.1e-15 88.2 316 26.3
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 2.1e-15 88.2 219 31.1
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 3.7e-15 87.4 239 26.8
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 3.7e-15 87.4 217 27.6
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 3.7e-15 87.4 248 27.0
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 3.7e-15 87.4 330 24.8
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 4.8e-15 87.0 317 26.8
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 4.8e-15 87.0 316 25.3
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 6.2e-15 86.7 316 25.6
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 6.2e-15 86.7 316 25.3
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 6.2e-15 86.7 216 27.8
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 6.2e-15 86.7 222 26.1
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 8.1e-15 86.3 316 25.3
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.1e-14 85.9 213 30.0
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.4e-14 85.5 214 29.9
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.4e-14 85.5 219 29.2
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 1.4e-14 85.5 222 26.6
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 1.4e-14 85.5 222 28.8
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 1.8e-14 85.1 318 24.8
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 2.4e-14 84.7 213 30.5
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 2.4e-14 84.7 217 28.1
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 3.1e-14 84.3 234 27.4
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 3.1e-14 84.3 228 26.8
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 5.3e-14 83.6 205 29.3
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 6.9e-14 83.2 225 28.9
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 6.9e-14 83.2 358 24.9
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 6.9e-14 83.2 224 27.7
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 1.2e-13 82.4 220 26.8
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 2.6e-13 81.3 314 26.8
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 5.8e-13 80.1 221 26.2
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 5.8e-13 80.1 262 27.1
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 1.7e-12 78.6 221 26.7
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 2.2e-12 78.2 219 26.9
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 4.9e-12 77.0 346 24.9
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 4.9e-12 77.0 253 26.5
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 1.1e-11 75.9 221 25.8
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 1.9e-11 75.1 263 26.6
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 7.1e-11 73.2 197 29.4
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 7.1e-11 73.2 221 28.1
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 2.1e-10 71.6 318 25.2
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 2.7e-10 71.2 314 26.1
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 3.5e-10 70.9 186 29.0
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 4.6e-10 70.5 188 29.8
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 1.3e-09 68.9 205 28.8
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 1.8e-09 68.6 272 25.4
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 9.6e-08 62.8 165 26.1
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 2.1e-07 61.6 196 26.0
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 6.3e-07 60.1 302 26.2
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 1.8e-06 58.5 182 28.6
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 4.1e-06 57.4 136 29.4


User provided reference genes

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