Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0628300 Oryza sativa ssp. japonica HOM05D004864 ORTHO05D005393 7.6e-121 437.2 223 100.0
Zm00001eb247790 Zea mays HOM05D029627 ORTHO05D005393 4.4e-68 261.9 223 62.8
MBI02_g10993_MAGBIO Magnolia biondii HOM05D004864 ORTHO05D005393 8.4e-27 124.8 217 35.0
Nn1g03649 Nelumbo nucifera HOM05D004864 ORTHO05D005393 1.9e-26 123.6 194 35.6
Cfa021639 Carpinus fangiana HOM05D004864 ORTHO05D005393 1.2e-25 120.9 194 35.1
CiPaw.09G086600 Carya illinoinensis HOM05D004864 ORTHO05D005393 1.0e-24 117.9 211 33.6
Hma1.2p1_0729F.1_g209590 Hydrangea macrophylla HOM05D004864 ORTHO05D005393 1.3e-24 117.5 222 32.0
Cc00_g17330 Coffea canephora HOM05D004864 ORTHO05D005393 3.0e-24 116.3 194 33.5
SGA_v2.0_scaffold89G27443 Striga asiatica HOM05D004864 ORTHO05D005393 3.9e-24 115.9 197 37.6
TWI38G2287 Tripterygium wilfordii HOM05D004864 ORTHO05D005393 3.9e-24 115.9 194 34.5
MD10G1314200 Malus domestica HOM05D004864 ORTHO05D005393 6.7e-24 115.2 194 33.0
Oeu026854.1 Olea europaea HOM05D004864 ORTHO05D005393 1.1e-23 114.4 196 31.1
Duzib160G0710 Durio zibethinus HOM05D004864 ORTHO05D005393 1.5e-23 114.0 194 35.1
FAN25G2771 Fragaria x ananassa HOM05D000039 ORTHO05D000366 1.5e-23 114.0 221 31.2
Nn1g07009 Nelumbo nucifera HOM05D004864 ORTHO05D005393 3.3e-23 112.8 197 34.5
Rhsim02G0112500 Rhododendron simsii HOM05D004864 ORTHO05D005393 3.3e-23 112.8 190 33.7
Duzib235G0333 Durio zibethinus HOM05D004864 ORTHO05D005393 5.6e-23 112.1 198 32.8
QL05p075308 Quercus lobata HOM05D004864 ORTHO05D005393 5.6e-23 112.1 192 32.3
TWI63G0675 Tripterygium wilfordii HOM05D004864 ORTHO05D005393 5.6e-23 112.1 194 32.0
FAN21G0279 Fragaria x ananassa HOM05D000039 ORTHO05D005393 7.4e-23 111.7 219 31.1
HPP92_010082 Vanilla planifolia HOM05D004864 ORTHO05D005393 7.4e-23 111.7 194 32.5
HPP92_010091 Vanilla planifolia HOM05D004864 ORTHO05D005393 7.4e-23 111.7 194 32.5
Thecc.06G213500 Theobroma cacao HOM05D004864 ORTHO05D005393 9.6e-23 111.3 196 33.2
Duzib192G0146 Durio zibethinus HOM05D004864 ORTHO05D005393 1.6e-22 110.5 194 34.5
MD05G1340700 Malus domestica HOM05D004864 ORTHO05D005393 1.6e-22 110.5 196 32.7
Oeu002712.1 Olea europaea HOM05D004864 ORTHO05D005393 1.6e-22 110.5 200 33.0
GSVIVG01012622001 Vitis vinifera HOM05D004864 ORTHO05D005393 1.6e-22 110.5 194 32.5
Carub.0002s0331 Capsella rubella HOM05D004864 ORTHO05D005393 2.1e-22 110.2 199 34.7
AT1G61760 Arabidopsis thaliana HOM05D004864 ORTHO05D005393 2.8e-22 109.8 198 33.8
Ca_10986_v3 Cicer arietinum L. HOM05D004864 ORTHO05D005393 2.8e-22 109.8 223 30.0
Medtr1g105570 Medicago truncatula HOM05D004864 ORTHO05D005393 3.6e-22 109.4 194 32.5
Prupe.4G026800 Prunus persica HOM05D004864 ORTHO05D005393 3.6e-22 109.4 194 32.5
FvH4_3g02710 Fragaria vesca HOM05D004864 ORTHO05D005393 4.8e-22 109.0 194 32.0
Gohir.D06G151400 Gossypium hirsutum HOM05D004864 ORTHO05D005393 6.2e-22 108.6 194 32.5
CANSAT56G2353 Cannabis sativa HOM05D004864 ORTHO05D005393 8.1e-22 108.2 194 32.0
Aqoxy4G02005 Aquilegia oxysepala HOM05D004864 ORTHO05D005393 1.1e-21 107.8 195 32.8
AL2G14350 Arabidopsis lyrata HOM05D004864 ORTHO05D005393 1.1e-21 107.8 198 34.3
Glyma.10G252500 Glycine max HOM05D004864 ORTHO05D005393 1.1e-21 107.8 194 30.9
Gohir.A06G208200 Gossypium hirsutum HOM05D004864 ORTHO05D005393 1.1e-21 107.8 206 34.0
Sp6g03770 Schrenkiella parvula HOM05D004864 ORTHO05D005393 1.1e-21 107.8 194 32.0
BcaC04g21386 Brassica carinata HOM05D004864 ORTHO05D005393 1.4e-21 107.5 194 31.4
A09p25510 Brassica napus HOM05D004864 ORTHO05D005393 1.4e-21 107.5 194 31.4
C09p32420 Brassica napus HOM05D004864 ORTHO05D005393 1.4e-21 107.5 194 31.4
BolC9t56087H Brassica oleracea HOM05D004864 ORTHO05D005393 1.4e-21 107.5 194 31.4
Ciclev10017613m.g Citrus clementina HOM05D004864 ORTHO05D005393 1.4e-21 107.5 194 34.5
TPR.G5531 Trifolium pratense HOM05D004864 ORTHO05D005393 1.4e-21 107.5 193 30.6
BcaB01g01894 Brassica carinata HOM05D004864 ORTHO05D005393 1.8e-21 107.1 194 32.0
BraA09t38126Z Brassica rapa HOM05D004864 ORTHO05D005393 1.8e-21 107.1 194 31.4
BcaC06g31861 Brassica carinata HOM05D004864 ORTHO05D005393 2.4e-21 106.7 199 36.2
CARHR252340 Cardamine hirsuta HOM05D004864 ORTHO05D005393 2.4e-21 106.7 231 29.4
Gohir.A10G015600 Gossypium hirsutum HOM05D004864 ORTHO05D005393 2.4e-21 106.7 196 35.2
Gohir.A06G144900 Gossypium hirsutum HOM05D004864 ORTHO05D005393 3.1e-21 106.3 194 32.0
BcaC02g10538 Brassica carinata HOM05D004864 ORTHO05D005393 4.0e-21 105.9 194 34.0
C04p27710 Brassica napus HOM05D004864 ORTHO05D005393 4.0e-21 105.9 194 34.0
BolC4t24315H Brassica oleracea HOM05D004864 ORTHO05D005393 4.0e-21 105.9 194 34.0
BraA01t03194Z Brassica rapa HOM05D004864 ORTHO05D005393 4.0e-21 105.9 197 35.0
Gorai.010G253200 Gossypium raimondii HOM05D004864 ORTHO05D005393 4.0e-21 105.9 198 33.3
Lalb_Chr21g0307861 Lupinus albus HOM05D004864 ORTHO05D005393 4.0e-21 105.9 194 32.5
THA.LOC104806980 Tarenaya hassleriana HOM05D004864 ORTHO05D005393 4.0e-21 105.9 194 31.4
Thhalv10028945m.g Eutrema salsugineum HOM05D004864 ORTHO05D005393 5.3e-21 105.5 194 31.4
Glyma.20G140900 Glycine max HOM05D004864 ORTHO05D005393 5.3e-21 105.5 194 30.9
A01p30630 Brassica napus HOM05D004864 ORTHO05D005393 6.9e-21 105.1 197 35.0
CAN.G404.72 Capsicum annuum HOM05D004864 ORTHO05D005393 6.9e-21 105.1 196 30.1
RcHm_v2.0_Chr5g0004071 Rosa chinensis HOM05D004864 ORTHO05D005393 6.9e-21 105.1 198 32.8
SalBow8G3899 Salvia bowleyana HOM05D004864 ORTHO05D005393 6.9e-21 105.1 193 32.6
VMungo0720G0776 Vigna mungo HOM05D004864 ORTHO05D005393 6.9e-21 105.1 194 32.5
BcaB04g20371 Brassica carinata HOM05D004864 ORTHO05D005393 9.0e-21 104.8 199 34.7
SalBow1G1219 Salvia bowleyana HOM05D004864 ORTHO05D005393 9.0e-21 104.8 195 32.8
THA.LOC104818895 Tarenaya hassleriana HOM05D004864 ORTHO05D005393 9.0e-21 104.8 197 33.5
CSS0029430 Camellia sinensis var. sinensis HOM05D004864 ORTHO05D005393 1.2e-20 104.4 194 28.9
Carub.0006s3316 Capsella rubella HOM05D004864 ORTHO05D005393 1.2e-20 104.4 194 32.5
Lsat_1_v5_gn_4_57701 Lactuca sativa HOM05D004864 ORTHO05D005393 1.2e-20 104.4 213 30.0
Phvul.007G051700 Phaseolus vulgaris HOM05D004864 ORTHO05D005393 1.2e-20 104.4 194 30.9
unitig_749.g13623 Utricularia gibba HOM05D002991 ORTHO05D003480 1.2e-20 104.4 218 31.2
MSTRG.14650 Avicennia marina HOM05D004864 ORTHO05D005393 1.5e-20 104.0 194 29.9
HanXRQChr16g0516361 Helianthus annuus HOM05D004864 ORTHO05D005393 1.5e-20 104.0 196 29.1
Sc05g0008850 Simmondsia chinensis HOM05D004864 ORTHO05D005393 1.5e-20 104.0 197 32.0
AL6G48820 Arabidopsis lyrata HOM05D004864 ORTHO05D005393 2.0e-20 103.6 194 32.0
AT4G05220 Arabidopsis thaliana HOM05D004864 ORTHO05D005393 2.0e-20 103.6 194 32.0
Thhalv10024123m.g Eutrema salsugineum HOM05D004864 ORTHO05D005393 2.0e-20 103.6 197 34.0
CiPaw.10G067800 Carya illinoinensis HOM05D004864 ORTHO05D005393 2.6e-20 103.2 192 32.8
C01p39040 Brassica napus HOM05D004864 ORTHO05D005393 3.4e-20 102.8 195 34.9
BolC1t03854H Brassica oleracea HOM05D004864 ORTHO05D005393 3.4e-20 102.8 195 34.9
CsaV3_1G011090 Cucumis sativus L. HOM05D004864 ORTHO05D005393 3.4e-20 102.8 194 32.0
Dinv20009 Davidia involucrata HOM05D004864 ORTHO05D005393 4.5e-20 102.4 194 30.9
Nitab4.5_0004428g0010 Nicotiana tabacum HOM05D004864 ORTHO05D005393 4.5e-20 102.4 195 29.7
Psat6g210120 Pisum sativum HOM05D004864 ORTHO05D005393 4.5e-20 102.4 194 31.4
Sp2g02800 Schrenkiella parvula HOM05D004864 ORTHO05D005393 4.5e-20 102.4 197 34.5
A03p67220 Brassica napus HOM05D004864 ORTHO05D005393 5.8e-20 102.1 194 34.0
BraA01t02752Z Brassica rapa HOM05D004864 ORTHO05D005393 5.8e-20 102.1 194 34.0
ClCG03G005010 Citrullus lanatus HOM05D004864 ORTHO05D005393 5.8e-20 102.1 199 32.7
PGR004G0091 Punica granatum HOM05D004864 ORTHO05D005393 5.8e-20 102.1 194 32.0
CARHR050580 Cardamine hirsuta HOM05D004864 ORTHO05D005393 7.6e-20 101.7 197 34.5
HanXRQChr15g0473381 Helianthus annuus HOM05D004864 ORTHO05D005393 7.6e-20 101.7 200 32.0
TAR629G1637 Trochodendron aralioides HOM05D004864 ORTHO05D005393 7.6e-20 101.7 194 33.0
Os07g0531500 Oryza sativa ssp. japonica HOM05D004864 ORTHO05D005393 9.9e-20 101.3 208 32.2
Haze_06727 Corylus avellana HOM05D004864 ORTHO05D005393 1.3e-19 100.9 178 33.1
Haze_06730 Corylus avellana HOM05D004864 ORTHO05D005393 1.3e-19 100.9 178 33.1
MELO3C002486.2 Cucumis melo HOM05D004864 ORTHO05D005393 1.3e-19 100.9 194 32.0
Lalb_Chr02g0144571 Lupinus albus HOM05D004864 ORTHO05D005393 1.3e-19 100.9 194 30.9
ATR0794G132 Amborella trichopoda HOM05D004864 ORTHO05D005393 1.7e-19 100.5 215 28.8
Cpa.g.sc81.26 Carica papaya HOM05D004864 ORTHO05D005393 1.7e-19 100.5 201 31.8
Manes.16G013100 Manihot esculenta HOM05D004864 ORTHO05D005393 2.2e-19 100.1 201 30.3
Peaxi162Scf00781g00043 Petunia axillaris HOM05D004864 ORTHO05D005393 3.8e-19 99.4 197 31.0
Eucgr.D00819 Eucalyptus grandis HOM05D004864 ORTHO05D005393 4.9e-19 99.0 194 30.4
Nitab4.5_0000900g0080 Nicotiana tabacum HOM05D004864 ORTHO05D005393 4.9e-19 99.0 195 29.2
Peaxi162Scf00082g00164 Petunia axillaris HOM05D004864 ORTHO05D005393 4.9e-19 99.0 193 30.1
unitig_62.g23516 Utricularia gibba HOM05D004864 ORTHO05D005393 4.9e-19 99.0 206 30.1
Aa31LG9G9220 Aethionema arabicum HOM05D004864 ORTHO05D005393 6.4e-19 98.6 195 29.2
Lj1P1224T18 Lonicera japonica HOM05D004864 ORTHO05D005393 6.4e-19 98.6 200 31.5
Potri.004G023300 Populus trichocarpa HOM05D004864 ORTHO05D005393 8.4e-19 98.2 194 28.4
EL10Ac8g19904 Beta vulgaris HOM05D004864 ORTHO05D005393 1.1e-18 97.8 198 32.3
Hma1.2p1_0091F.1_g046130 Hydrangea macrophylla HOM05D004864 ORTHO05D005393 1.4e-18 97.4 194 29.4
Gohir.D10G015600 Gossypium hirsutum HOM05D004864 ORTHO05D005393 1.9e-18 97.1 195 31.8
Gorai.011G017200 Gossypium raimondii HOM05D004864 ORTHO05D005393 1.9e-18 97.1 195 31.8
MBI18_g06812_MAGBIO Magnolia biondii HOM05D004864 ORTHO05D002050 1.9e-18 97.1 188 33.5
Sabra11G0017300 Salix brachista HOM05D004864 ORTHO05D005393 1.9e-18 97.1 194 29.9
Sabra11G0020900 Salix brachista HOM05D004864 ORTHO05D005393 1.9e-18 97.1 194 29.9
PGSC0003DMG400002082 Solanum tuberosum HOM05D004864 ORTHO05D005393 1.9e-18 97.1 193 31.1
Solyc02g080100.1 Solanum lycopersicum HOM05D004864 ORTHO05D005393 2.4e-18 96.7 193 31.6
Sopen02g024820 Solanum pennellii HOM05D004864 ORTHO05D005393 2.4e-18 96.7 193 31.6
Aa31LG2G9080 Aethionema arabicum HOM05D004864 ORTHO05D005393 3.2e-18 96.3 205 32.2
PSO541G6526 Papaver somniferum HOM05D004864 ORTHO05D005393 3.2e-18 96.3 198 30.3
PSO675G2425 Papaver somniferum HOM05D004864 ORTHO05D005393 4.2e-18 95.9 198 30.3
Potri.011G027400 Populus trichocarpa HOM05D004864 ORTHO05D005393 4.2e-18 95.9 218 29.8
TAR626G0768 Trochodendron aralioides HOM05D004864 ORTHO05D005393 4.2e-18 95.9 194 31.4
Manes.17G029200 Manihot esculenta HOM05D004864 ORTHO05D005393 7.1e-18 95.1 189 30.7
PGSC0003DMG400005073 Solanum tuberosum HOM05D004864 ORTHO05D005393 7.1e-18 95.1 199 29.1
Zm00001eb106290 Zea mays HOM05D004864 ORTHO05D005393 2.1e-17 93.6 205 31.2
Zm00001eb323160 Zea mays HOM05D004864 ORTHO05D005393 2.1e-17 93.6 200 29.5
Lsat_1_v5_gn_7_16961 Lactuca sativa HOM05D004864 ORTHO05D005393 4.6e-17 92.4 194 27.3
Lj5g0012012 Lotus japonicus HOM05D004864 ORTHO05D005393 1.0e-16 91.3 194 29.4
CAN.G569.47 Capsicum annuum HOM05D004864 ORTHO05D005393 1.3e-16 90.9 193 30.1
Sabra04G0012800 Salix brachista HOM05D004864 ORTHO05D005393 1.3e-16 90.9 182 30.2
Dinv17837 Davidia involucrata HOM05D000039 ORTHO05D005393 2.3e-16 90.1 177 29.9
Zm00001eb069910 Zea mays HOM05D029627 ORTHO05D005393 5.1e-16 89.0 71 62.0
Zm00001eb069980 Zea mays HOM05D029627 ORTHO05D005393 5.1e-16 89.0 71 62.0
unitig_26.g9397 Utricularia gibba HOM05D004864 ORTHO05D005393 1.5e-15 87.4 192 28.1
DCAR_028154 Daucus carota HOM05D004864 ORTHO05D005393 1.9e-15 87.0 190 27.4
Ciclev10016780m.g Citrus clementina HOM05D004864 ORTHO05D005393 3.3e-15 86.3 189 25.9
Sed0000521 Sechium edule HOM05D004864 ORTHO05D005393 5.6e-15 85.5 170 31.8
Rhsim13G0157900 Rhododendron simsii HOM05D008626 ORTHO05D005393 2.1e-14 83.6 172 31.4
Gorai.010G253300 Gossypium raimondii HOM05D004864 ORTHO05D005393 1.1e-13 81.3 195 28.2
Ciclev10016725m.g Citrus clementina HOM05D004864 ORTHO05D005393 1.4e-13 80.9 196 27.0
Gohir.D06G212800 Gossypium hirsutum HOM05D004864 ORTHO05D005393 1.8e-13 80.5 195 28.2
COL.COLO4_31720 Corchorus olitorius HOM05D004864 ORTHO05D005393 1.2e-12 77.8 184 31.0
Zm00001eb065400 Zea mays HOM05D004864 ORTHO05D005393 1.5e-12 77.4 179 30.2
Gohir.A06G208300 Gossypium hirsutum HOM05D004864 ORTHO05D005393 2.6e-12 76.6 195 28.7
Zm00001eb069770 Zea mays HOM05D029627 ORTHO05D444362 1.0e-11 74.7 64 57.8
Atru.chr10.2140 Acer truncatum HOM05D004864 ORTHO05D005393 3.8e-11 72.8 194 28.4
CDE01G0650 Ceratophyllum demersum HOM05D004864 ORTHO05D005393 1.1e-10 71.2 110 38.2
Oeu030987.2 Olea europaea HOM05D004864 ORTHO05D005393 2.5e-10 70.1 246 23.6
CDE02G3717 Ceratophyllum demersum HOM05D002455 ORTHO05D002816 7.1e-10 68.6 150 28.0
Atru.chr10.2139 Acer truncatum HOM05D004864 ORTHO05D005393 9.3e-10 68.2 192 24.5
ECA233G2410 Erigeron canadensis HOM05D000980 ORTHO05D000649 9.3e-10 68.2 197 25.4
Os02g0538700 Oryza sativa ssp. japonica HOM05D000733 ORTHO05D000644 1.6e-09 67.4 187 28.9
ATR0661G276 Amborella trichopoda HOM05D000733 ORTHO05D000644 2.1e-09 67.0 185 30.8
Gorai.010G176500 Gossypium raimondii HOM05D004864 ORTHO05D005393 2.7e-09 66.6 134 28.4
Dinv18890 Davidia involucrata HOM05D004864 ORTHO05D005393 1.0e-08 64.7 160 26.9
Nitab4.5_0001686g0030 Nicotiana tabacum HOM05D004864 ORTHO05D005393 1.3e-08 64.3 163 27.0
SEGI_40745 Sequoiadendron giganteum HOM05D000980 ORTHO05D000649 1.3e-08 64.3 224 21.0
Migut.H01550 Erythranthe guttata HOM05D004864 ORTHO05D005393 2.3e-08 63.5 125 28.8
PGR004G1369 Punica granatum HOM05D000733 ORTHO05D000644 6.7e-08 62.0 193 27.5
SEGI_06709 Sequoiadendron giganteum HOM05D000733 ORTHO05D000644 8.7e-08 61.6 192 24.5
Os05g0367900 Oryza sativa ssp. japonica HOM05D000733 ORTHO05D000644 1.9e-07 60.5 189 30.7
SEGI_39149 Sequoiadendron giganteum HOM05D000733 ORTHO05D005393 2.5e-07 60.1 224 22.8
Gohir.D06G212900 Gossypium hirsutum HOM05D004864 ORTHO05D005393 4.3e-07 59.3 140 27.9
HPP92_015049 Vanilla planifolia HOM05D000733 ORTHO05D000644 4.3e-07 59.3 200 29.5
Ciclev10029305m.g Citrus clementina HOM05D000733 ORTHO05D000649 7.4e-07 58.5 204 23.5
Sabra02G0134100 Salix brachista HOM05D000733 ORTHO05D000644 1.3e-06 57.8 183 27.9
Nn2g13881 Nelumbo nucifera HOM05D000733 ORTHO05D000649 1.6e-06 57.4 209 23.0
Carub.0004s0757 Capsella rubella HOM05D000973 ORTHO05D000652 2.8e-06 56.6 215 23.7
Potri.014G106100 Populus trichocarpa HOM05D000733 ORTHO05D000644 2.8e-06 56.6 174 27.6
CDE06G0023 Ceratophyllum demersum HOM05D000733 ORTHO05D000649 4.8e-06 55.8 203 24.1
Os04g0416700 Oryza sativa ssp. japonica HOM05D000733 ORTHO05D000644 6.3e-06 55.5 183 24.0
GSVIVG01027444001 Vitis vinifera HOM05D000733 ORTHO05D000644 6.3e-06 55.5 194 27.3
Sed0026403 Sechium edule HOM05D000234 ORTHO05D001258 8.2e-06 55.1 195 26.7
Thecc.01G333000 Theobroma cacao HOM05D000733 ORTHO05D000644 8.2e-06 55.1 177 28.2


User provided reference genes

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