Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0566900 Oryza sativa ssp. japonica HOM05D004148 ORTHO05D004709 1.1e-170 603.2 304 100.0
Zm00001eb073760 Zea mays HOM05D004148 ORTHO05D004709 3.4e-111 405.6 286 73.1
Zm00001eb428880 Zea mays HOM05D004148 ORTHO05D004709 5.3e-64 248.8 184 73.4
HPP92_019532 Vanilla planifolia HOM05D004148 ORTHO05D004709 1.5e-55 220.7 289 46.7
Nn2g14486 Nelumbo nucifera HOM05D004148 ORTHO05D004709 4.2e-53 212.6 302 43.0
COL.COLO4_25330 Corchorus olitorius HOM05D004148 ORTHO05D004709 1.0e-51 208.0 304 45.1
vmacro04063 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 2.3e-51 206.8 303 43.6
TAR623G1397 Trochodendron aralioides HOM05D004148 ORTHO05D004709 3.0e-51 206.5 287 43.6
Lj2A891G11 Lonicera japonica HOM05D004148 ORTHO05D004709 8.7e-51 204.9 294 43.2
Hund18819 Selenicereus undatus HOM05D004148 ORTHO05D004709 2.5e-50 203.4 288 41.3
MBI11_g07705_MAGBIO Magnolia biondii HOM05D004148 ORTHO05D004709 3.3e-50 203.0 309 41.7
PGR102G2778 Punica granatum HOM05D004148 ORTHO05D004709 3.3e-50 203.0 305 43.6
Dinv32838 Davidia involucrata HOM05D004148 ORTHO05D004709 1.6e-49 200.7 304 42.8
Thecc.09G266000 Theobroma cacao HOM05D004148 ORTHO05D004709 2.8e-49 199.9 304 43.4
Atru.chr3.3014 Acer truncatum HOM05D004148 ORTHO05D004709 6.2e-49 198.7 296 44.9
ATR0697G020 Amborella trichopoda HOM05D004148 ORTHO05D004709 1.4e-48 197.6 322 40.7
MD03G1162400 Malus domestica HOM05D004148 ORTHO05D004709 1.4e-48 197.6 285 43.2
QL01p018674 Quercus lobata HOM05D004148 ORTHO05D004709 1.8e-48 197.2 293 43.3
Rhsim13G0199700 Rhododendron simsii HOM05D004148 ORTHO05D004709 4.0e-48 196.1 311 40.8
Gorai.009G080700 Gossypium raimondii HOM05D004148 ORTHO05D004709 5.3e-48 195.7 301 43.2
TWI60G0836 Tripterygium wilfordii HOM05D004148 ORTHO05D004709 5.3e-48 195.7 310 40.0
Prupe.6G151400 Prunus persica HOM05D004148 ORTHO05D004709 9.0e-48 194.9 285 43.2
Gohir.D05G079200 Gossypium hirsutum HOM05D004148 ORTHO05D004709 1.5e-47 194.1 303 42.9
GSVIVG01022379001 Vitis vinifera HOM05D004148 ORTHO05D004709 1.5e-47 194.1 282 42.6
Hma1.2p1_0218F.1_g092390 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 2.6e-47 193.4 294 41.2
PSO384G5014 Papaver somniferum HOM05D004148 ORTHO05D004709 3.4e-47 193.0 304 40.8
Eucgr.B03795 Eucalyptus grandis HOM05D004148 ORTHO05D004709 4.5e-47 192.6 308 42.2
Actinidia12896 Actinidia chinensis HOM05D001400 ORTHO05D001795 7.6e-47 191.8 247 46.2
CSS0039701 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 7.6e-47 191.8 293 41.3
PSO339G2294 Papaver somniferum HOM05D004148 ORTHO05D004709 7.6e-47 191.8 304 40.5
Gohir.A05G076400 Gossypium hirsutum HOM05D004148 ORTHO05D004709 2.2e-46 190.3 311 42.4
Aqoxy1G00551 Aquilegia oxysepala HOM05D004148 ORTHO05D004709 3.8e-46 189.5 292 40.8
Haze_23628 Corylus avellana HOM05D004148 ORTHO05D004709 4.9e-46 189.1 298 40.3
FAN12G2472 Fragaria x ananassa HOM05D004148 ORTHO05D004709 4.9e-46 189.1 295 44.1
arahy.Tifrunner.gnm1.ann1.SF9HJV Arachis hypogaea HOM05D004148 ORTHO05D004709 1.1e-45 188.0 288 40.6
Ciclev10027694m.g Citrus clementina HOM05D004148 ORTHO05D004709 1.4e-45 187.6 295 42.4
HanXRQChr03g0089821 Helianthus annuus HOM05D004148 ORTHO05D004709 1.9e-45 187.2 291 41.2
FvH4_4g33990 Fragaria vesca HOM05D004148 ORTHO05D004709 2.5e-45 186.8 288 44.1
Aa31LG4G13420 Aethionema arabicum HOM05D004148 ORTHO05D004709 5.5e-45 185.7 303 43.6
FAN17G2621 Fragaria x ananassa HOM05D004148 ORTHO05D004709 5.5e-45 185.7 296 42.9
Cfa010235 Carpinus fangiana HOM05D004148 ORTHO05D004709 7.1e-45 185.3 298 40.6
CDE07G1769 Ceratophyllum demersum HOM05D004148 ORTHO05D004709 7.1e-45 185.3 285 41.1
AUR62020189 Chenopodium quinoa HOM05D004148 ORTHO05D004709 7.1e-45 185.3 287 40.1
Sc06g0008560 Simmondsia chinensis HOM05D004148 ORTHO05D004709 1.2e-44 184.5 301 40.9
Cc00_g06190 Coffea canephora HOM05D004148 ORTHO05D004709 1.6e-44 184.1 293 38.9
Phvul.002G053700 Phaseolus vulgaris HOM05D004148 ORTHO05D004709 1.6e-44 184.1 299 39.5
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 1.6e-44 184.1 293 42.0
Cpa.g.sc103.97 Carica papaya HOM05D004148 ORTHO05D004709 2.1e-44 183.7 300 44.3
Ah.15g099170 Amaranthus hybridus HOM05D004148 ORTHO05D004709 2.7e-44 183.3 288 39.2
FAN22G0787 Fragaria x ananassa HOM05D004148 ORTHO05D004709 2.7e-44 183.3 296 42.6
VMungo1215G0285 Vigna mungo HOM05D004148 ORTHO05D004709 2.7e-44 183.3 303 39.3
Migut.D00721 Erythranthe guttata HOM05D004148 ORTHO05D004709 3.5e-44 183.0 291 40.9
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 3.5e-44 183.0 294 40.8
THA.LOC104815063 Tarenaya hassleriana HOM05D004148 ORTHO05D004709 1.0e-43 181.4 302 42.1
Oeu048810.1 Olea europaea HOM05D004148 ORTHO05D004709 3.9e-43 179.5 293 39.9
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 5.1e-43 179.1 303 39.3
MELO3C020298.2 Cucumis melo HOM05D004148 ORTHO05D004709 6.7e-43 178.7 297 39.7
MSTRG.21311 Avicennia marina HOM05D004148 ORTHO05D004709 8.7e-43 178.3 298 41.3
RcHm_v2.0_Chr5g0049541 Rosa chinensis HOM05D004148 ORTHO05D004709 8.7e-43 178.3 287 42.9
DCAR_012264 Daucus carota HOM05D000495 ORTHO05D000357 1.9e-42 177.2 283 39.9
A06p19850 Brassica napus HOM05D004148 ORTHO05D004709 2.5e-42 176.8 293 40.3
MD11G1178600 Malus domestica HOM05D004148 ORTHO05D004709 2.5e-42 176.8 285 39.6
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 5.7e-42 175.6 293 42.0
AT3G43610 Arabidopsis thaliana HOM05D004148 ORTHO05D004709 7.4e-42 175.3 295 39.7
BolSC21t60233H Brassica oleracea HOM05D004148 ORTHO05D004709 1.3e-41 174.5 293 41.6
CARHR108980 Cardamine hirsuta HOM05D004148 ORTHO05D004709 2.1e-41 173.7 293 39.9
CSS0039756 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 2.8e-41 173.3 288 40.3
EL10Ac7g16248 Beta vulgaris HOM05D004148 ORTHO05D004709 3.7e-41 172.9 292 38.7
Lsat_1_v5_gn_5_75780 Lactuca sativa HOM05D004148 ORTHO05D004709 3.7e-41 172.9 293 37.9
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 8.2e-41 171.8 302 39.7
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 8.2e-41 171.8 293 42.3
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 8.2e-41 171.8 300 39.0
CsaV3_3G017640 Cucumis sativus L. HOM05D004148 ORTHO05D004709 8.2e-41 171.8 297 39.1
Sed0012220 Sechium edule HOM05D004148 ORTHO05D004709 8.2e-41 171.8 296 39.9
Carub.0005s0934 Capsella rubella HOM05D004148 ORTHO05D004709 1.1e-40 171.4 303 40.6
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 1.4e-40 171.0 300 39.3
BraA06t25067Z Brassica rapa HOM05D004148 ORTHO05D004709 4.1e-40 169.5 296 39.9
Carub.0005s0948 Capsella rubella HOM05D004148 ORTHO05D004709 5.3e-40 169.1 299 39.5
ClCG05G010880 Citrullus lanatus HOM05D004148 ORTHO05D004709 6.9e-40 168.7 297 39.4
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 9.0e-40 168.3 271 38.7
Thhalv10002374m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 2.6e-39 166.8 296 41.6
CAN.G439.18 Capsicum annuum HOM05D004148 ORTHO05D004709 1.0e-38 164.9 296 37.8
Lj1g0011831 Lotus japonicus HOM05D004148 ORTHO05D004709 1.0e-38 164.9 289 37.7
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 5.0e-38 162.5 296 38.5
Potri.009G153300 Populus trichocarpa HOM05D004148 ORTHO05D004709 6.5e-38 162.2 274 38.7
SGA_v2.0_scaffold29G12109 Striga asiatica HOM05D004148 ORTHO05D004709 1.4e-37 161.0 331 36.3
Sopen11g029250 Solanum pennellii HOM05D004148 ORTHO05D004709 5.5e-37 159.1 293 37.9
Solyc11g071570.3 Solanum lycopersicum HOM05D004148 ORTHO05D004709 7.2e-37 158.7 295 37.6
Nitab4.5_0000615g0090 Nicotiana tabacum HOM05D004148 ORTHO05D004709 2.7e-36 156.8 293 35.8
Nitab4.5_0005222g0040 Nicotiana tabacum HOM05D004148 ORTHO05D004709 6.1e-36 155.6 293 35.5
Glyma.01G244400 Glycine max HOM05D004148 ORTHO05D004709 8.7e-35 151.8 289 37.4
Peaxi162Scf00217g00627 Petunia axillaris HOM05D004148 ORTHO05D004709 5.7e-34 149.1 297 36.0
Psat4g228400 Pisum sativum HOM05D004148 ORTHO05D004709 7.4e-34 148.7 289 38.8
SEGI_35526 Sequoiadendron giganteum HOM05D004148 ORTHO05D004709 8.2e-33 145.2 271 35.1
SHI25296 Sapria himalayana HOM05D004148 ORTHO05D004709 1.9e-29 134.0 245 40.4
Medtr5g004880 Medicago truncatula HOM05D004148 ORTHO05D004709 1.3e-25 121.3 286 34.3
Lalb_Chr16g0376251 Lupinus albus HOM05D004148 ORTHO05D004709 4.1e-24 116.3 236 34.7
arahy.Tifrunner.gnm1.ann1.J94639 Arachis hypogaea HOM05D004148 ORTHO05D004709 1.4e-19 101.3 139 43.2
BcaB01g00875 Brassica carinata HOM05D004148 ORTHO05D004709 1.1e-18 98.2 144 43.1
Hma1.2p1_2711F.1_g327330 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 5.7e-18 95.9 117 47.0
AagrBONN_evm.TU.Sc2ySwM_228.375 Anthoceros agrestis HOM05D004148 ORTHO05D004709 7.4e-18 95.5 291 29.9
CARHR148440 Cardamine hirsuta HOM05D004148 ORTHO05D004709 4.5e-15 86.3 122 44.3
Mapoly0099s0003 Marchantia polymorpha HOM05D004148 ORTHO05D004709 4.5e-15 86.3 234 29.9
BolC8t48007H Brassica oleracea HOM05D004148 ORTHO05D004709 6.5e-14 82.4 208 34.6
C05p34090 Brassica napus HOM05D004148 ORTHO05D004709 2.7e-12 77.0 129 41.9
unitig_21.g20312 Utricularia gibba HOM05D004148 ORTHO05D004709 6.7e-11 72.4 146 32.9
A08p06640 Brassica napus HOM05D004148 ORTHO05D004709 4.8e-09 66.2 112 41.1
BraA07t28462Z Brassica rapa HOM05D004148 ORTHO05D004709 8.2e-09 65.5 112 40.2
A08p03240 Brassica napus HOM05D004148 ORTHO05D004709 2.9e-06 57.0 56 53.6
FAN16G3212 Fragaria x ananassa HOM05D004148 ORTHO05D004709 3.8e-06 56.6 126 35.7
Pp3c11_24620 Physcomitrium patens HOM05D004148 ORTHO05D004709 6.5e-06 55.8 147 26.5
A09p33570 Brassica napus HOM05D004148 ORTHO05D004709 8.5e-06 55.5 56 51.8
A10p16420 Brassica napus HOM05D004148 ORTHO05D004709 8.5e-06 55.5 56 51.8
C06p15540 Brassica napus HOM05D004148 ORTHO05D004709 8.5e-06 55.5 56 51.8
C08p23060 Brassica napus HOM05D004148 ORTHO05D004709 8.5e-06 55.5 56 51.8


User provided reference genes

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