Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0546400 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 8.9e-57 223.4 114 100.0
Zm00001eb427920 Zea mays HOM05D003706 ORTHO05D004487 3.3e-19 98.6 61 77.0
Zm00001eb186330 Zea mays HOM05D003706 ORTHO05D004487 2.8e-10 68.9 67 55.2
Nitab4.5_0000618g0150 Nicotiana tabacum HOM05D003706 ORTHO05D004487 3.6e-10 68.6 69 55.1
Os02g0654500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 6.2e-10 67.8 44 77.3
Peaxi162Scf00190g01214 Petunia axillaris HOM05D003706 ORTHO05D004487 1.4e-09 66.6 69 55.1
AUR62007134 Chenopodium quinoa HOM05D003706 ORTHO05D004487 1.8e-09 66.2 60 56.7
AUR62018878 Chenopodium quinoa HOM05D003706 ORTHO05D004487 1.8e-09 66.2 60 56.7
Gohir.A08G166700 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.8e-09 66.2 65 55.4
Mapoly0021s0071 Marchantia polymorpha HOM05D003706 ORTHO05D004487 1.8e-09 66.2 61 50.8
Nitab4.5_0002206g0070 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.8e-09 66.2 69 53.6
Zm00001eb249260 Zea mays HOM05D003706 ORTHO05D004487 1.8e-09 66.2 67 53.7
Ciclev10022039m.g Citrus clementina HOM05D003706 ORTHO05D004487 2.4e-09 65.9 50 64.0
Ciclev10023537m.g Citrus clementina HOM05D003706 ORTHO05D004487 2.4e-09 65.9 50 66.0
Gohir.D08G185500 Gossypium hirsutum HOM05D003706 ORTHO05D004487 3.1e-09 65.5 65 55.4
Gorai.004G194900 Gossypium raimondii HOM05D003706 ORTHO05D004487 3.1e-09 65.5 65 55.4
Solyc06g060850.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 4.0e-09 65.1 69 55.1
Sopen06g021000 Solanum pennellii HOM05D003706 ORTHO05D004487 4.0e-09 65.1 69 53.6
PGSC0003DMG400024158 Solanum tuberosum HOM05D003706 ORTHO05D004487 4.0e-09 65.1 69 55.1
SalBow7G0213 Salvia bowleyana HOM05D003706 ORTHO05D004487 5.3e-09 64.7 63 60.3
EL10Ac5g12313 Beta vulgaris HOM05D003706 ORTHO05D004487 9.0e-09 63.9 60 50.0
COL.COLO4_10024 Corchorus olitorius HOM05D003706 ORTHO05D004487 9.0e-09 63.9 44 70.5
Gohir.A12G214200 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.2e-08 63.5 65 53.8
arahy.Tifrunner.gnm1.ann1.PS7EZR Arachis hypogaea HOM05D003706 ORTHO05D004487 1.5e-08 63.2 50 62.0
CAN.G1856.6 Capsicum annuum HOM05D003706 ORTHO05D004487 1.5e-08 63.2 77 44.2
CBR_g30854 Chara braunii HOM05D003706 ORTHO05D004487 1.5e-08 63.2 49 55.1
Lj2C226G3 Lonicera japonica HOM05D003706 ORTHO05D004487 1.5e-08 63.2 44 70.5
Peaxi162Scf00260g00418 Petunia axillaris HOM05D003706 ORTHO05D004487 1.5e-08 63.2 60 58.3
arahy.Tifrunner.gnm1.ann1.P7CRZW Arachis hypogaea HOM05D003706 ORTHO05D004487 2.0e-08 62.8 50 62.0
Lj4g0012322 Lotus japonicus HOM05D003706 ORTHO05D004487 2.0e-08 62.8 50 60.0
Pp3c3_8410 Physcomitrium patens HOM05D003706 ORTHO05D004487 2.6e-08 62.4 57 49.1
Actinidia02181 Actinidia chinensis HOM05D003706 ORTHO05D004487 3.4e-08 62.0 50 62.0
AagrBONN_evm.TU.Sc2ySwM_368.2205 Anthoceros agrestis HOM05D003706 ORTHO05D004487 3.4e-08 62.0 50 54.0
Duzib068G0005 Durio zibethinus HOM05D003706 ORTHO05D004487 3.4e-08 62.0 44 68.2
Gohir.D12G216800 Gossypium hirsutum HOM05D003706 ORTHO05D004487 3.4e-08 62.0 44 68.2
Gorai.008G232400 Gossypium raimondii HOM05D003706 ORTHO05D004487 3.4e-08 62.0 44 68.2
Sabra03G0052000 Salix brachista HOM05D003706 ORTHO05D004487 3.4e-08 62.0 61 50.8
Thecc.03G244800 Theobroma cacao HOM05D003706 ORTHO05D004487 3.4e-08 62.0 44 68.2
ATR0057G038 Amborella trichopoda HOM05D003706 ORTHO05D004487 4.5e-08 61.6 54 57.4
CAN.G62.15 Capsicum annuum HOM05D003706 ORTHO05D004487 5.8e-08 61.2 69 53.6
Ca_21985_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 5.8e-08 61.2 50 60.0
Ca_21998_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 5.8e-08 61.2 50 60.0
ClCG10G002430 Citrullus lanatus HOM05D003706 ORTHO05D004487 5.8e-08 61.2 50 60.0
Manes.01G085700 Manihot esculenta HOM05D003706 ORTHO05D004487 5.8e-08 61.2 67 46.3
Nn1g00853 Nelumbo nucifera HOM05D003706 ORTHO05D004487 5.8e-08 61.2 48 60.4
HPP92_014688 Vanilla planifolia HOM05D003706 ORTHO05D004487 5.8e-08 61.2 51 60.8
MELO3C013914.2 Cucumis melo HOM05D003706 ORTHO05D004487 7.6e-08 60.8 50 60.0
Potri.003G081000 Populus trichocarpa HOM05D003706 ORTHO05D004487 7.6e-08 60.8 51 58.8
Prupe.5G061500 Prunus persica HOM05D003706 ORTHO05D004487 7.6e-08 60.8 67 46.3
SMO364G0877 Selaginella moellendorffii HOM05D003706 ORTHO05D004487 7.6e-08 60.8 63 49.2
arahy.Tifrunner.gnm1.ann1.JF7LYS Arachis hypogaea HOM05D003706 ORTHO05D004487 9.9e-08 60.5 44 65.9
arahy.Tifrunner.gnm1.ann1.MI1D26 Arachis hypogaea HOM05D003706 ORTHO05D004487 9.9e-08 60.5 44 65.9
Duzib084G0672 Durio zibethinus HOM05D003706 ORTHO05D004487 9.9e-08 60.5 44 65.9
Glyma.05G063800 Glycine max HOM05D003706 ORTHO05D004487 9.9e-08 60.5 50 60.0
Psat4g074200 Pisum sativum HOM05D003706 ORTHO05D004487 9.9e-08 60.5 50 60.0
Migut.A01026 Erythranthe guttata HOM05D003706 ORTHO05D004487 1.3e-07 60.1 50 62.0
Nitab4.5_0006805g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.3e-07 60.1 69 49.3
Oeu040685.1 Olea europaea HOM05D003706 ORTHO05D004487 1.7e-07 59.7 65 47.7
BcaC06g33562 Brassica carinata HOM05D003706 ORTHO05D004487 2.2e-07 59.3 50 58.0
BcaC09g51635 Brassica carinata HOM05D003706 ORTHO05D004487 2.2e-07 59.3 50 58.0
BcaNung00085 Brassica carinata HOM05D003706 ORTHO05D004487 2.2e-07 59.3 50 58.0
C01p11160 Brassica napus HOM05D003706 ORTHO05D004487 2.2e-07 59.3 50 58.0
C07p48810 Brassica napus HOM05D003706 ORTHO05D004487 2.2e-07 59.3 50 58.0
BolC1t01081H Brassica oleracea HOM05D003706 ORTHO05D004487 2.2e-07 59.3 50 58.0
BolC7t45389H Brassica oleracea HOM05D003706 ORTHO05D004487 2.2e-07 59.3 50 58.0
BraA03t14138Z Brassica rapa HOM05D003706 ORTHO05D004487 2.2e-07 59.3 50 62.0
Carub.0007s2389 Capsella rubella HOM05D003706 ORTHO05D004487 2.2e-07 59.3 50 62.0
Dinv21679 Davidia involucrata HOM05D003706 ORTHO05D004487 2.2e-07 59.3 67 44.8
Nitab4.5_0009301g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 2.2e-07 59.3 59 54.2
Ah.07g198590 Amaranthus hybridus HOM05D003706 ORTHO05D004487 2.9e-07 58.9 51 54.9
Aqoxy3G02726 Aquilegia oxysepala HOM05D003706 ORTHO05D004487 2.9e-07 58.9 51 56.9
arahy.Tifrunner.gnm1.ann1.FUBR3I Arachis hypogaea HOM05D003706 ORTHO05D004487 2.9e-07 58.9 51 56.9
MSTRG.12138 Avicennia marina HOM05D003706 ORTHO05D004487 2.9e-07 58.9 50 62.0
Thhalv10026137m.g Eutrema salsugineum HOM05D003706 ORTHO05D004487 2.9e-07 58.9 50 60.0
Lalb_Chr05g0221021 Lupinus albus HOM05D003706 ORTHO05D004487 2.9e-07 58.9 50 58.0
MBI04_g41760_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 2.9e-07 58.9 63 50.8
Phvul.003G223748 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 2.9e-07 58.9 50 58.0
Sp7g16650 Schrenkiella parvula HOM05D003706 ORTHO05D004487 2.9e-07 58.9 50 60.0
TPR.G10445 Trifolium pratense HOM05D003706 ORTHO05D004487 2.9e-07 58.9 50 58.0
Actinidia25892 Actinidia chinensis HOM05D003706 ORTHO05D004487 3.8e-07 58.5 50 58.0
AT4G17510 Arabidopsis thaliana HOM05D003706 ORTHO05D004487 3.8e-07 58.5 50 60.0
Cc08_g11880 Coffea canephora HOM05D003706 ORTHO05D004487 3.8e-07 58.5 67 52.2
TWI15G0458 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 3.8e-07 58.5 50 58.0
vmacro00024 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 3.8e-07 58.5 50 56.0
BcaNung03459 Brassica carinata HOM05D003706 ORTHO05D004487 4.9e-07 58.2 50 60.0
A03p50490 Brassica napus HOM05D003706 ORTHO05D004487 4.9e-07 58.2 50 60.0
CARHR224210 Cardamine hirsuta HOM05D003706 ORTHO05D004487 4.9e-07 58.2 50 60.0
Glyma.17G145500 Glycine max HOM05D003706 ORTHO05D004487 4.9e-07 58.2 50 56.0
Medtr4g100360 Medicago truncatula HOM05D003706 ORTHO05D004487 4.9e-07 58.2 50 58.0
PSO782G4370 Papaver somniferum HOM05D003706 ORTHO05D004487 4.9e-07 58.2 64 48.4
Sed0008996 Sechium edule HOM05D003706 ORTHO05D004487 4.9e-07 58.2 50 56.0
HPP92_002099 Vanilla planifolia HOM05D003706 ORTHO05D004487 4.9e-07 58.2 51 56.9
A01p09590 Brassica napus HOM05D003706 ORTHO05D004487 6.4e-07 57.8 50 56.0
BraA01t00901Z Brassica rapa HOM05D003706 ORTHO05D004487 6.4e-07 57.8 50 56.0
CsaV3_3G002450 Cucumis sativus L. HOM05D003706 ORTHO05D004487 6.4e-07 57.8 46 60.9
Hund14510 Selenicereus undatus HOM05D003706 ORTHO05D004487 6.4e-07 57.8 60 51.7
TAR629G3078 Trochodendron aralioides HOM05D003706 ORTHO05D004487 6.4e-07 57.8 50 56.0
unitig_0.g1053 Utricularia gibba HOM05D003706 ORTHO05D004487 6.4e-07 57.8 49 59.2
Atru.chr9.1245 Acer truncatum HOM05D003706 ORTHO05D004487 8.4e-07 57.4 50 58.0
CSS0020819 Camellia sinensis var. sinensis HOM05D003706 ORTHO05D004487 8.4e-07 57.4 44 61.4
Carub.0007s2388 Capsella rubella HOM05D003706 ORTHO05D004487 8.4e-07 57.4 50 60.0
PSO063G5263 Papaver somniferum HOM05D003706 ORTHO05D004487 8.4e-07 57.4 64 46.9
SGA_v2.0_scaffold104G30203 Striga asiatica HOM05D003706 ORTHO05D004487 8.4e-07 57.4 67 50.7
AL7G37120 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 1.1e-06 57.0 50 56.0
arahy.Tifrunner.gnm1.ann1.77EYCF Arachis hypogaea HOM05D003706 ORTHO05D004487 1.1e-06 57.0 48 58.3
Glyma.01G206200 Glycine max HOM05D003706 ORTHO05D004487 1.1e-06 57.0 50 58.0
Lalb_Chr16g0386511 Lupinus albus HOM05D003706 ORTHO05D004487 1.1e-06 57.0 50 58.0
Phvul.002G000300 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 1.1e-06 57.0 50 58.0
VMungo0251G2614 Vigna mungo HOM05D003706 ORTHO05D006202 1.1e-06 57.0 46 60.9
VMungo0251G2656 Vigna mungo HOM05D003706 ORTHO05D004487 1.1e-06 57.0 46 60.9
CiPaw.11G084300 Carya illinoinensis HOM05D003706 ORTHO05D004487 1.4e-06 56.6 50 56.0
CDE11G0530 Ceratophyllum demersum HOM05D003706 ORTHO05D004487 1.4e-06 56.6 51 54.9
Lalb_Chr05g0214291 Lupinus albus HOM05D003706 ORTHO05D004487 1.4e-06 56.6 50 54.0
Sc22g0001060 Simmondsia chinensis HOM05D003706 ORTHO05D004487 1.4e-06 56.6 63 46.0
THA.LOC104813337 Tarenaya hassleriana HOM05D003706 ORTHO05D004487 1.4e-06 56.6 50 52.0
TPR.G4685 Trifolium pratense HOM05D003706 ORTHO05D004487 1.4e-06 56.6 47 59.6
CiPaw.12G048600 Carya illinoinensis HOM05D003706 ORTHO05D004487 1.9e-06 56.2 47 59.6
DCAR_004606 Daucus carota HOM05D003706 ORTHO05D004487 1.9e-06 56.2 59 52.5
FvH4_5g19870 Fragaria vesca HOM05D003706 ORTHO05D004487 1.9e-06 56.2 67 43.3
FAN18G2986 Fragaria x ananassa HOM05D003706 ORTHO05D004487 1.9e-06 56.2 67 43.3
MD04G1057500 Malus domestica HOM05D003706 ORTHO05D004487 1.9e-06 56.2 67 43.3
Manes.02G042700 Manihot esculenta HOM05D003706 ORTHO05D004487 1.9e-06 56.2 50 56.0
Oeu031158.1 Olea europaea HOM05D003706 ORTHO05D004487 1.9e-06 56.2 67 49.3
VMungo1215G2603 Vigna mungo HOM05D003706 ORTHO05D004487 1.9e-06 56.2 44 63.6
Aa31LG6G250 Aethionema arabicum HOM05D003706 ORTHO05D004487 2.4e-06 55.8 50 54.0
HanXRQChr16g0511641 Helianthus annuus HOM05D003706 ORTHO05D004487 2.4e-06 55.8 44 63.6
Lalb_Chr00c24g0407441 Lupinus albus HOM05D003706 ORTHO05D004487 2.4e-06 55.8 46 58.7
CANSAT21G1120 Cannabis sativa HOM05D003706 ORTHO05D004487 3.2e-06 55.5 50 58.0
Dinv28848 Davidia involucrata HOM05D003706 ORTHO05D004487 3.2e-06 55.5 70 42.9
Dinv39188 Davidia involucrata HOM05D003706 ORTHO05D004487 3.2e-06 55.5 70 42.9
FAN04G0187 Fragaria x ananassa HOM05D003706 ORTHO05D004487 3.2e-06 55.5 67 43.3
FAN13G2930 Fragaria x ananassa HOM05D003706 ORTHO05D004487 3.2e-06 55.5 67 43.3
TWI15G0745 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 3.2e-06 55.5 44 61.4
AL7G37110 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 4.2e-06 55.1 50 56.0
MD06G1051100 Malus domestica HOM05D003706 ORTHO05D004487 4.2e-06 55.1 67 43.3
PGR042G3774 Punica granatum HOM05D003706 ORTHO05D004487 4.2e-06 55.1 44 59.1
Solyc08g078140.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 4.2e-06 55.1 69 44.9
SGA_v2.0_scaffold199G41234 Striga asiatica HOM05D003706 ORTHO05D004487 4.2e-06 55.1 44 65.9
vmacro00025 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 4.2e-06 55.1 47 57.4
QL12p009287 Quercus lobata HOM05D003706 ORTHO05D004487 5.5e-06 54.7 50 54.0
QL12p009718 Quercus lobata HOM05D003706 ORTHO05D004487 5.5e-06 54.7 50 54.0
RcHm_v2.0_Chr7g0204661 Rosa chinensis HOM05D003706 ORTHO05D004487 5.5e-06 54.7 50 56.0
DCAR_000641 Daucus carota HOM05D003706 ORTHO05D004487 7.1e-06 54.3 66 42.4
FAN08G3606 Fragaria x ananassa HOM05D003706 ORTHO05D004487 7.1e-06 54.3 50 56.0
Sopen08g026630 Solanum pennellii HOM05D003706 ORTHO05D004487 7.1e-06 54.3 51 52.9
GSVIVG01004795001 Vitis vinifera HOM05D003706 ORTHO05D004487 7.1e-06 54.3 50 54.0
Hma1.2p1_0821F.1_g224200 Hydrangea macrophylla HOM05D003706 ORTHO05D004487 9.3e-06 53.9 50 52.0
Lsat_1_v5_gn_9_30321 Lactuca sativa HOM05D003706 ORTHO05D004487 9.3e-06 53.9 44 63.6
MCO01G147 Micromonas commoda HOM05D003706 ORTHO05D004487 9.3e-06 53.9 56 42.9
PGSC0003DMG400026229 Solanum tuberosum HOM05D003706 ORTHO05D004487 9.3e-06 53.9 69 44.9
TAR636G2892 Trochodendron aralioides HOM05D003706 ORTHO05D004487 9.3e-06 53.9 50 52.0


User provided reference genes

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