Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0490000 Oryza sativa ssp. japonica HOM05D007163 ORTHO05D009213 1.7e-80 302.8 169 100.0
Glyma.19G087600 Glycine max HOM05D007163 ORTHO05D009213 1.1e-15 87.4 68 63.2
Lj1g0003964 Lotus japonicus HOM05D007163 ORTHO05D009213 1.1e-15 87.4 68 63.2
VMungo1383G0219 Vigna mungo HOM05D007163 ORTHO05D009213 1.1e-15 87.4 68 63.2
BraA10t44490Z Brassica rapa HOM05D007163 ORTHO05D009213 1.5e-15 87.0 72 62.5
Cpa.g.sc130.4 Carica papaya HOM05D007163 ORTHO05D009213 1.5e-15 87.0 65 64.6
Medtr7g031310 Medicago truncatula HOM05D007163 ORTHO05D009213 1.9e-15 86.7 65 66.2
TPR.G38344 Trifolium pratense HOM05D007163 ORTHO05D009213 1.9e-15 86.7 68 63.2
Phvul.001G095800 Phaseolus vulgaris HOM05D007163 ORTHO05D009213 2.5e-15 86.3 68 61.8
BolC9t59131H Brassica oleracea HOM05D007163 ORTHO05D009213 3.3e-15 85.9 72 62.5
CDE08G0784 Ceratophyllum demersum HOM05D007163 ORTHO05D009213 3.3e-15 85.9 77 59.7
C09p62940 Brassica napus HOM05D007163 ORTHO05D009213 4.3e-15 85.5 68 64.7
TAR374G1101 Trochodendron aralioides HOM05D007163 ORTHO05D009213 4.3e-15 85.5 88 58.0
unitig_0.g1943 Utricularia gibba HOM05D007163 ORTHO05D009213 4.3e-15 85.5 85 57.6
Ah.11g045340 Amaranthus hybridus HOM05D007163 ORTHO05D009213 5.6e-15 85.1 78 56.4
Ciclev10014964m.g Citrus clementina HOM05D007163 ORTHO05D009213 5.6e-15 85.1 65 64.6
A10p24250 Brassica napus HOM05D007163 ORTHO05D009213 7.3e-15 84.7 67 64.2
Nn3g16518 Nelumbo nucifera HOM05D007163 ORTHO05D009213 7.3e-15 84.7 62 67.7
arahy.Tifrunner.gnm1.ann1.P5B8TA Arachis hypogaea HOM05D007163 ORTHO05D009213 9.5e-15 84.3 68 60.3
arahy.Tifrunner.gnm1.ann1.P8AP0Y Arachis hypogaea HOM05D007163 ORTHO05D009213 9.5e-15 84.3 68 60.3
AT5G14220 Arabidopsis thaliana HOM05D007163 ORTHO05D009213 1.2e-14 84.0 60 68.3
BcaC04g19052 Brassica carinata HOM05D007163 ORTHO05D009213 1.2e-14 84.0 68 63.2
THA.LOC104802380 Tarenaya hassleriana HOM05D007163 ORTHO05D009213 1.2e-14 84.0 67 62.7
CARHR199120 Cardamine hirsuta HOM05D007163 ORTHO05D009213 1.6e-14 83.6 60 68.3
AL6G24890 Arabidopsis lyrata HOM05D007163 ORTHO05D009213 2.1e-14 83.2 60 66.7
Gohir.A05G340200 Gossypium hirsutum HOM05D007163 ORTHO05D009213 2.1e-14 83.2 65 61.5
BcaB08g36967 Brassica carinata HOM05D007163 ORTHO05D009213 2.8e-14 82.8 67 62.7
Gohir.D04G078700 Gossypium hirsutum HOM05D007163 ORTHO05D009213 2.8e-14 82.8 65 61.5
TWI56G0022 Tripterygium wilfordii HOM05D007163 ORTHO05D009213 2.8e-14 82.8 81 58.0
Actinidia05923 Actinidia chinensis HOM05D007163 ORTHO05D009213 3.6e-14 82.4 80 58.8
Aa31LG11G15010 Aethionema arabicum HOM05D007163 ORTHO05D009213 3.6e-14 82.4 60 68.3
GSVIVG01001816001 Vitis vinifera HOM05D007163 ORTHO05D009213 3.6e-14 82.4 60 63.3
Carub.0006s1242 Capsella rubella HOM05D007163 ORTHO05D009213 4.7e-14 82.0 76 59.2
Cc07_g00620 Coffea canephora HOM05D007163 ORTHO05D009213 4.7e-14 82.0 74 62.2
Gorai.012G088600 Gossypium raimondii HOM05D007163 ORTHO05D009213 4.7e-14 82.0 77 55.8
Lsat_1_v5_gn_4_185401 Lactuca sativa HOM05D007163 ORTHO05D009213 4.7e-14 82.0 72 62.5
Manes.15G158600 Manihot esculenta HOM05D007163 ORTHO05D009213 4.7e-14 82.0 69 60.9
Psat3g180200 Pisum sativum HOM05D007163 ORTHO05D009213 4.7e-14 82.0 62 64.5
Sp6g29810 Schrenkiella parvula HOM05D007163 ORTHO05D009213 4.7e-14 82.0 67 62.7
Ca_08364_v3 Cicer arietinum L. HOM05D007163 ORTHO05D009213 6.2e-14 81.6 65 63.1
ECA232G3833 Erigeron canadensis HOM05D007163 ORTHO05D009213 6.2e-14 81.6 72 61.1
Lalb_Chr14g0363061 Lupinus albus HOM05D007163 ORTHO05D009213 6.2e-14 81.6 68 58.8
Nitab4.5_0000559g0210 Nicotiana tabacum HOM05D007163 ORTHO05D009213 6.2e-14 81.6 68 60.3
Potri.001G333500 Populus trichocarpa HOM05D007163 ORTHO05D009213 6.2e-14 81.6 71 60.6
Rhsim10G0008600 Rhododendron simsii HOM05D007163 ORTHO05D009213 6.2e-14 81.6 74 62.2
EL10Ac2g03213 Beta vulgaris HOM05D007163 ORTHO05D009213 8.1e-14 81.3 76 55.3
Dinv25673 Davidia involucrata HOM05D007163 ORTHO05D009213 8.1e-14 81.3 90 55.6
Duzib264G0233 Durio zibethinus HOM05D007163 ORTHO05D009213 8.1e-14 81.3 66 62.1
Sc03g0006730 Simmondsia chinensis HOM05D007163 ORTHO05D009213 8.1e-14 81.3 72 54.2
Thecc.04G030600 Theobroma cacao HOM05D007163 ORTHO05D009213 8.1e-14 81.3 65 61.5
FvH4_6g53090 Fragaria vesca HOM05D007163 ORTHO05D009213 1.1e-13 80.9 72 62.5
FAN09G2097 Fragaria x ananassa HOM05D007163 ORTHO05D009213 1.1e-13 80.9 72 62.5
FAN14G4233 Fragaria x ananassa HOM05D007163 ORTHO05D009213 1.1e-13 80.9 72 62.5
Nitab4.5_0006819g0080 Nicotiana tabacum HOM05D007163 ORTHO05D009213 1.1e-13 80.9 66 60.6
CANSAT64G2763 Cannabis sativa HOM05D007163 ORTHO05D009213 1.4e-13 80.5 65 61.5
Lju41C50G12 Lonicera japonica HOM05D007163 ORTHO05D009213 1.4e-13 80.5 73 56.2
PSO063G0972 Papaver somniferum HOM05D007163 ORTHO05D009213 1.4e-13 80.5 106 48.1
Aqoxy5G03466 Aquilegia oxysepala HOM05D007163 ORTHO05D009213 2.3e-13 79.7 59 61.0
CAN.G1965.14 Capsicum annuum HOM05D007163 ORTHO05D009213 2.3e-13 79.7 82 54.9
AUR62018256 Chenopodium quinoa HOM05D007163 ORTHO05D009213 2.3e-13 79.7 65 58.5
AUR62037751 Chenopodium quinoa HOM05D007163 ORTHO05D009213 2.3e-13 79.7 65 58.5
Migut.H00010 Erythranthe guttata HOM05D007163 ORTHO05D009213 2.3e-13 79.7 83 54.2
Solyc03g005080.4 Solanum lycopersicum HOM05D007163 ORTHO05D009213 2.3e-13 79.7 84 56.0
PGSC0003DMG400013429 Solanum tuberosum HOM05D007163 ORTHO05D009213 2.3e-13 79.7 83 55.4
HanXRQChr09g0256071 Helianthus annuus HOM05D007163 ORTHO05D009213 3.1e-13 79.3 78 55.1
Sopen03g001080 Solanum pennellii HOM05D007163 ORTHO05D009213 3.1e-13 79.3 84 56.0
MBI11_g06765_MAGBIO Magnolia biondii HOM05D007163 ORTHO05D009213 4.0e-13 79.0 59 62.7
QL02p071962 Quercus lobata HOM05D007163 ORTHO05D009213 4.0e-13 79.0 59 64.4
SalBow1G0436 Salvia bowleyana HOM05D007163 ORTHO05D009213 4.0e-13 79.0 74 58.1
CSS0007697 Camellia sinensis var. sinensis HOM05D007163 ORTHO05D009213 5.2e-13 78.6 84 51.2
MD17G1014800 Malus domestica HOM05D007163 ORTHO05D009213 5.2e-13 78.6 80 56.2
Sabra16G0214800 Salix brachista HOM05D007163 ORTHO05D009213 5.2e-13 78.6 71 56.3
MELO3C008208.2 Cucumis melo HOM05D007163 ORTHO05D009213 6.8e-13 78.2 59 66.1
FAN02G2995 Fragaria x ananassa HOM05D007163 ORTHO05D009213 6.8e-13 78.2 69 58.0
Sed0015727 Sechium edule HOM05D007163 ORTHO05D009213 1.2e-12 77.4 65 61.5
CsaV3_6G001080 Cucumis sativus L. HOM05D007163 ORTHO05D009213 2.0e-12 76.6 59 64.4
RcHm_v2.0_Chr2g0174871 Rosa chinensis HOM05D007163 ORTHO05D009213 2.0e-12 76.6 74 59.5
RcHm_v2.0_Chr2g0174941 Rosa chinensis HOM05D007163 ORTHO05D009213 2.0e-12 76.6 74 59.5
Pp3c1_4180 Physcomitrium patens HOM05D007163 ORTHO05D009213 2.6e-12 76.3 56 69.6
SMO165G0055 Selaginella moellendorffii HOM05D007163 ORTHO05D009213 4.4e-12 75.5 67 61.2
AagrBONN_evm.TU.Sc2ySwM_362.138 Anthoceros agrestis HOM05D007163 ORTHO05D009213 1.7e-11 73.6 55 65.5
ATR0686G017 Amborella trichopoda HOM05D007163 ORTHO05D009213 2.9e-11 72.8 59 57.6
MD17G1014700 Malus domestica HOM05D007163 ORTHO05D009213 1.4e-10 70.5 80 52.5
CBR_g44281 Chara braunii HOM05D007163 ORTHO05D009213 1.9e-10 70.1 69 58.0
COL.COLO4_08751 Corchorus olitorius HOM05D007163 ORTHO05D009213 7.1e-10 68.2 49 65.3
Eucgr.J02313 Eucalyptus grandis HOM05D007163 ORTHO05D009213 2.1e-09 66.6 48 62.5
Thhalv10013706m.g Eutrema salsugineum HOM05D007163 ORTHO05D009213 3.5e-09 65.9 60 60.0
Peaxi162Scf00700g00151 Petunia axillaris HOM05D007163 ORTHO05D009213 2.3e-08 63.2 48 60.4
vmacro05939 Vaccinium macrocarpon HOM05D007163 ORTHO05D009213 5.1e-08 62.0 46 67.4
DCAR_021768 Daucus carota HOM05D007163 ORTHO05D009213 6.6e-08 61.6 72 48.6
Haze_14841 Corylus avellana HOM05D007163 ORTHO05D009213 1.9e-07 60.1 41 65.9
ClCG11G006970 Citrullus lanatus HOM05D007163 ORTHO05D009213 2.1e-06 56.6 54 61.1
ATR0580G200 Amborella trichopoda HOM05D007321 ORTHO05D009244 3.6e-06 55.8 72 43.1
SMO116G0156 Selaginella moellendorffii HOM05D007321 ORTHO05D009244 4.7e-06 55.5 57 45.6
Ciclev10004047m.g Citrus clementina HOM05D007321 ORTHO05D009244 6.2e-06 55.1 69 44.9


User provided reference genes

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