Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0429300 Oryza sativa ssp. japonica HOM05D003014 ORTHO05D003233 9.5e-101 370.5 242 100.0
Zm00001eb082900 Zea mays HOM05D003014 ORTHO05D003233 3.2e-24 116.3 226 35.0
Os04g0429400 Oryza sativa ssp. japonica HOM05D003014 ORTHO05D003233 7.2e-24 115.2 237 48.5
Thecc.08G003900 Theobroma cacao HOM05D003014 ORTHO05D003233 4.4e-21 105.9 241 30.7
TAR376G0856 Trochodendron aralioides HOM05D003014 ORTHO05D003233 5.7e-21 105.5 241 31.1
TAR381G0350 Trochodendron aralioides HOM05D003014 ORTHO05D003233 2.2e-20 103.6 241 30.7
Peaxi162Scf00152g00131 Petunia axillaris HOM05D003014 ORTHO05D003233 2.8e-20 103.2 238 31.5
Lj9C357T7 Lonicera japonica HOM05D003014 ORTHO05D003233 3.7e-20 102.8 243 30.9
Ciclev10003973m.g Citrus clementina HOM05D003014 ORTHO05D003233 1.4e-19 100.9 241 28.2
Lsat_1_v5_gn_9_110961 Lactuca sativa HOM05D003014 ORTHO05D003233 1.8e-19 100.5 240 31.2
GSVIVG01009469001 Vitis vinifera HOM05D003014 ORTHO05D003233 1.8e-19 100.5 241 31.1
Nitab4.5_0001428g0060 Nicotiana tabacum HOM05D003014 ORTHO05D003233 3.1e-19 99.8 243 31.3
ECA240G1347 Erigeron canadensis HOM05D003014 ORTHO05D003233 4.1e-19 99.4 242 31.4
Nitab4.5_0001230g0010 Nicotiana tabacum HOM05D003014 ORTHO05D003233 7.0e-19 98.6 215 30.2
Nitab4.5_0007431g0020 Nicotiana tabacum HOM05D003014 ORTHO05D003233 7.0e-19 98.6 243 32.5
PSO170G5216 Papaver somniferum HOM05D003014 ORTHO05D003233 7.0e-19 98.6 245 30.6
Dinv15730 Davidia involucrata HOM05D003014 ORTHO05D003233 1.6e-18 97.4 241 30.7
Rhsim11G0164600 Rhododendron simsii HOM05D003014 ORTHO05D003233 2.7e-18 96.7 239 30.1
vmacro02036 Vaccinium macrocarpon HOM05D003014 ORTHO05D003233 2.7e-18 96.7 216 31.5
Dinv42167 Davidia involucrata HOM05D003014 ORTHO05D003233 7.7e-18 95.1 241 29.0
Lj9C355T10 Lonicera japonica HOM05D003014 ORTHO05D003233 7.7e-18 95.1 217 31.3
Nitab4.5_0000292g0060 Nicotiana tabacum HOM05D003014 ORTHO05D003233 1.0e-17 94.7 199 32.2
Potri.001G305100 Populus trichocarpa HOM05D003014 ORTHO05D003233 2.9e-17 93.2 240 30.4
Gohir.D01G110400 Gossypium hirsutum HOM05D003014 ORTHO05D003233 3.8e-17 92.8 241 29.9
Gorai.002G135000 Gossypium raimondii HOM05D003014 ORTHO05D003233 3.8e-17 92.8 241 29.9
Manes.18G039500 Manihot esculenta HOM05D003014 ORTHO05D003233 3.8e-17 92.8 242 29.8
Prupe.1G432900 Prunus persica HOM05D003014 ORTHO05D003233 5.0e-17 92.4 241 29.5
Ciclev10030106m.g Citrus clementina HOM05D003014 ORTHO05D003233 1.9e-16 90.5 248 27.0
Gohir.A01G122633 Gossypium hirsutum HOM05D003014 ORTHO05D003233 1.9e-16 90.5 241 29.0
Potri.014G025900 Populus trichocarpa HOM05D003014 ORTHO05D003233 1.9e-16 90.5 244 29.5
Actinidia00429 Actinidia chinensis HOM05D003014 ORTHO05D003233 3.2e-16 89.7 227 28.2
Gohir.A01G122666 Gossypium hirsutum HOM05D003014 ORTHO05D003233 3.2e-16 89.7 241 29.0
Oeu013724.1 Olea europaea HOM05D003014 ORTHO05D003233 3.2e-16 89.7 238 29.4
PSO210G4688 Papaver somniferum HOM05D003014 ORTHO05D003233 3.2e-16 89.7 262 32.8
TWI36G1467 Tripterygium wilfordii HOM05D003014 ORTHO05D003233 4.2e-16 89.4 243 28.8
Hma1.2p1_0370F.1_g137650 Hydrangea macrophylla HOM05D003014 ORTHO05D003233 5.5e-16 89.0 241 27.8
Peaxi162Scf00016g02026 Petunia axillaris HOM05D003014 ORTHO05D003233 5.5e-16 89.0 213 30.0
Prupe.8G127700 Prunus persica HOM05D003014 ORTHO05D003233 7.2e-16 88.6 237 30.0
Sc08g0001710 Simmondsia chinensis HOM05D003014 ORTHO05D003233 7.2e-16 88.6 248 29.8
Atru.chr13.721 Acer truncatum HOM05D003014 ORTHO05D003233 9.4e-16 88.2 245 28.6
CSS0044289 Camellia sinensis var. sinensis HOM05D003014 ORTHO05D003233 1.2e-15 87.8 239 27.6
Haze_10098 Corylus avellana HOM05D003014 ORTHO05D003233 1.2e-15 87.8 245 29.4
CSS0023387 Camellia sinensis var. sinensis HOM05D003014 ORTHO05D003233 1.6e-15 87.4 238 29.4
MD15G1079900 Malus domestica HOM05D003014 ORTHO05D003233 1.6e-15 87.4 241 28.6
HanXRQChr03g0074841 Helianthus annuus HOM05D003014 ORTHO05D003233 2.1e-15 87.0 240 27.9
Manes.10G080300 Manihot esculenta HOM05D003014 ORTHO05D003233 2.1e-15 87.0 240 28.3
GSVIVG01031718001 Vitis vinifera HOM05D003014 ORTHO05D003233 2.1e-15 87.0 241 29.0
Eucgr.G01493 Eucalyptus grandis HOM05D003014 ORTHO05D003233 6.1e-15 85.5 223 28.7
PGSC0003DMG400025783 Solanum tuberosum HOM05D003014 ORTHO05D003233 6.1e-15 85.5 241 27.4
Duzib132G1208 Durio zibethinus HOM05D003014 ORTHO05D003233 8.0e-15 85.1 241 29.9
SEGI_00209 Sequoiadendron giganteum HOM05D003014 ORTHO05D003233 1.0e-14 84.7 235 28.5
Solyc01g107960.4 Solanum lycopersicum HOM05D003014 ORTHO05D003233 1.0e-14 84.7 241 29.0
PGSC0003DMG400025782 Solanum tuberosum HOM05D003014 ORTHO05D003233 1.0e-14 84.7 241 27.4
MBI17_g08637_MAGBIO Magnolia biondii HOM05D003014 ORTHO05D003233 1.8e-14 84.0 227 30.0
PGR042G3868 Punica granatum HOM05D003014 ORTHO05D003233 1.8e-14 84.0 239 27.6
Medtr4g085660 Medicago truncatula HOM05D003014 ORTHO05D003233 2.3e-14 83.6 239 26.4
Sabra16G0191500 Salix brachista HOM05D000187 ORTHO05D000230 3.0e-14 83.2 241 29.0
CSS0015958 Camellia sinensis var. sinensis HOM05D003014 ORTHO05D003233 4.0e-14 82.8 236 28.8
Cfa004537 Carpinus fangiana HOM05D003014 ORTHO05D003233 4.0e-14 82.8 238 29.0
Solyc01g107950.2 Solanum lycopersicum HOM05D003014 ORTHO05D003233 5.2e-14 82.4 240 27.1
Gohir.A13G041500 Gossypium hirsutum HOM05D003014 ORTHO05D003233 6.8e-14 82.0 241 26.6
Sabra14G0017800 Salix brachista HOM05D003014 ORTHO05D003233 6.8e-14 82.0 213 29.6
Sopen01g050130 Solanum pennellii HOM05D003014 ORTHO05D003233 8.8e-14 81.6 238 27.3
Cc02_g18940 Coffea canephora HOM05D003014 ORTHO05D003233 1.5e-13 80.9 247 27.9
QL11p034987 Quercus lobata HOM05D003014 ORTHO05D003233 1.5e-13 80.9 242 28.5
Oeu007296.1 Olea europaea HOM05D003014 ORTHO05D003233 2.0e-13 80.5 212 28.3
QL02p004396 Quercus lobata HOM05D003014 ORTHO05D003233 2.0e-13 80.5 240 27.1
MELO3C018451.2 Cucumis melo HOM05D003014 ORTHO05D003233 2.6e-13 80.1 252 35.7
Glyma.02G103200 Glycine max HOM05D003014 ORTHO05D003233 2.6e-13 80.1 239 25.1
PGSC0003DMG400025780 Solanum tuberosum HOM05D003014 ORTHO05D003233 2.6e-13 80.1 242 26.0
PGSC0003DMG400025781 Solanum tuberosum HOM05D003014 ORTHO05D003233 2.6e-13 80.1 243 27.2
VMungo0251G1556 Vigna mungo HOM05D003014 ORTHO05D003233 2.6e-13 80.1 239 26.4
Gohir.D13G040200 Gossypium hirsutum HOM05D003014 ORTHO05D003233 3.4e-13 79.7 241 25.7
Oeu001777.1 Olea europaea HOM05D003014 ORTHO05D003233 3.4e-13 79.7 241 28.6
HPP92_002772 Vanilla planifolia HOM05D003014 ORTHO05D003233 3.4e-13 79.7 245 26.9
Zm00001eb261420 Zea mays HOM05D003014 ORTHO05D003233 3.4e-13 79.7 237 27.4
CANSAT25G0518 Cannabis sativa HOM05D003014 ORTHO05D003233 4.4e-13 79.3 244 37.3
CsaV3_7G008580 Cucumis sativus L. HOM05D003014 ORTHO05D003233 4.4e-13 79.3 249 29.7
Phvul.003G048000 Phaseolus vulgaris HOM05D003014 ORTHO05D003233 4.4e-13 79.3 239 25.9
COL.COLO4_32636 Corchorus olitorius HOM05D003014 ORTHO05D003233 5.7e-13 79.0 248 29.0
Medtr4g085700 Medicago truncatula HOM05D003014 ORTHO05D003233 1.3e-12 77.8 236 26.3
CiPaw.06G171700 Carya illinoinensis HOM05D003014 ORTHO05D003233 1.7e-12 77.4 241 27.0
Gorai.013G045100 Gossypium raimondii HOM05D003014 ORTHO05D003233 1.7e-12 77.4 243 27.2
Sopen01g050170 Solanum pennellii HOM05D003014 ORTHO05D003233 1.7e-12 77.4 236 27.5
THA.LOC104806046 Tarenaya hassleriana HOM05D003014 ORTHO05D003233 1.7e-12 77.4 197 26.9
ClCG02G005950 Citrullus lanatus HOM05D003014 ORTHO05D003233 2.2e-12 77.0 249 37.8
RcHm_v2.0_Chr6g0308241 Rosa chinensis HOM05D003014 ORTHO05D003233 2.2e-12 77.0 205 26.8
Solyc01g107970.1 Solanum lycopersicum HOM05D003014 ORTHO05D003233 2.2e-12 77.0 236 28.0
Thecc.02G102900 Theobroma cacao HOM05D003014 ORTHO05D003233 2.2e-12 77.0 213 29.1
Aqoxy5G01197 Aquilegia oxysepala HOM05D003014 ORTHO05D003233 2.8e-12 76.6 207 30.0
EL10Ac9g21584 Beta vulgaris HOM05D003014 ORTHO05D003233 3.7e-12 76.3 218 30.3
Sed0010940 Sechium edule HOM05D003014 ORTHO05D003233 3.7e-12 76.3 240 27.5
Sopen01g050150 Solanum pennellii HOM05D003014 ORTHO05D003233 3.7e-12 76.3 239 26.4
VMungo0251G3056 Vigna mungo HOM05D003014 ORTHO05D003233 4.9e-12 75.9 239 26.4
RcHm_v2.0_Chr6g0257881 Rosa chinensis HOM05D003014 ORTHO05D003233 6.3e-12 75.5 241 24.9
CAN.G1231.38 Capsicum annuum HOM05D003014 ORTHO05D003233 1.1e-11 74.7 239 27.2
Cpa.g.sc21.177 Carica papaya HOM05D003014 ORTHO05D003233 1.1e-11 74.7 211 26.5
Solyc01g020170.2 Solanum lycopersicum HOM05D003014 ORTHO05D003233 1.1e-11 74.7 236 27.1
Sopen01g050140 Solanum pennellii HOM05D000002 ORTHO05D003233 1.1e-11 74.7 218 28.0
Actinidia12937 Actinidia chinensis HOM05D003014 ORTHO05D003233 1.4e-11 74.3 65 52.3
CDE02G2363 Ceratophyllum demersum HOM05D003014 ORTHO05D003233 1.4e-11 74.3 196 27.0
Sopen01g021920 Solanum pennellii HOM05D003014 ORTHO05D003233 1.8e-11 73.9 242 26.4
BraA05t20958Z Brassica rapa HOM05D003014 ORTHO05D003233 2.4e-11 73.6 203 26.1
Sabra09G0076200 Salix brachista HOM05D003014 ORTHO05D003233 2.4e-11 73.6 240 27.9
A05p20490 Brassica napus HOM05D003014 ORTHO05D003233 3.1e-11 73.2 203 26.1
TWI56G0629 Tripterygium wilfordii HOM05D003014 ORTHO05D003233 3.1e-11 73.2 199 27.1
ECA240G0588 Erigeron canadensis HOM05D000071 ORTHO05D003233 4.1e-11 72.8 237 27.0
PGSC0003DMG400045009 Solanum tuberosum HOM05D003014 ORTHO05D003233 5.4e-11 72.4 215 28.4
CAN.G1041.46 Capsicum annuum HOM05D003014 ORTHO05D003233 7.0e-11 72.0 239 26.8
Psat7g178280 Pisum sativum HOM05D003014 ORTHO05D003233 7.0e-11 72.0 238 25.6
Solyc01g057300.2 Solanum lycopersicum HOM05D003014 ORTHO05D003233 9.2e-11 71.6 241 26.6
BcaC05g27473 Brassica carinata HOM05D003014 ORTHO05D003233 1.2e-10 71.2 203 26.1
C05p34380 Brassica napus HOM05D003014 ORTHO05D003233 1.2e-10 71.2 203 26.1
BcaB02g11106 Brassica carinata HOM05D003014 ORTHO05D003233 2.0e-10 70.5 204 28.4
BolC5t32166H Brassica oleracea HOM05D003014 ORTHO05D003233 2.0e-10 70.5 203 26.1
CAN.G1838.2 Capsicum annuum HOM05D003014 ORTHO05D003233 2.7e-10 70.1 210 26.7
Lj4g0009952 Lotus japonicus HOM05D003014 ORTHO05D003233 2.7e-10 70.1 56 57.1
Lj4g0025998 Lotus japonicus HOM05D003014 ORTHO05D003233 2.7e-10 70.1 61 54.1
FvH4_2g05810 Fragaria vesca HOM05D003014 ORTHO05D003233 5.9e-10 68.9 249 24.9
Psat0s1066g0040 Pisum sativum HOM05D003014 ORTHO05D003233 5.9e-10 68.9 67 52.2
SGA_v2.0_scaffold393G50697 Striga asiatica HOM05D003014 ORTHO05D003233 5.9e-10 68.9 238 26.5
Nn1g04801 Nelumbo nucifera HOM05D003014 ORTHO05D003233 7.7e-10 68.6 60 51.7
Sed0005157 Sechium edule HOM05D003014 ORTHO05D003233 7.7e-10 68.6 240 38.3
TPR.G12728 Trifolium pratense HOM05D003014 ORTHO05D003233 7.7e-10 68.6 209 25.8
Psat1g001360 Pisum sativum HOM05D003014 ORTHO05D003233 1.0e-09 68.2 61 52.5
AUR62010242 Chenopodium quinoa HOM05D003014 ORTHO05D003233 1.3e-09 67.8 64 46.9
FAN15G1137 Fragaria x ananassa HOM05D003014 ORTHO05D003233 1.3e-09 67.8 247 24.7
FAN24G2463 Fragaria x ananassa HOM05D003014 ORTHO05D003233 1.7e-09 67.4 245 23.7
COL.COLO4_26545 Corchorus olitorius HOM05D003014 ORTHO05D003233 2.3e-09 67.0 67 47.8
Gohir.D02G209050 Gossypium hirsutum HOM05D003014 ORTHO05D003233 2.3e-09 67.0 58 53.4
Lalb_Chr20g0108401 Lupinus albus HOM05D003014 ORTHO05D003233 2.3e-09 67.0 239 23.4
Phvul.003G048100 Phaseolus vulgaris HOM05D003014 ORTHO05D003233 2.9e-09 66.6 209 25.8
Psat0s1067g0080 Pisum sativum HOM05D003014 ORTHO05D003233 5.0e-09 65.9 244 24.6
Psat0s5079g0040 Pisum sativum HOM05D003014 ORTHO05D003233 5.0e-09 65.9 238 21.8
ATR0584G279 Amborella trichopoda HOM05D003014 ORTHO05D003233 6.6e-09 65.5 65 46.2
Psat0s1067g0120 Pisum sativum HOM05D003014 ORTHO05D003233 6.6e-09 65.5 67 50.7
CARHR039820 Cardamine hirsuta HOM05D003014 ORTHO05D003233 1.1e-08 64.7 246 25.2
CAN.G1041.44 Capsicum annuum HOM05D003014 ORTHO05D003233 1.5e-08 64.3 240 26.7
Psat7g126040 Pisum sativum HOM05D003014 ORTHO05D003233 1.5e-08 64.3 239 25.1
Hund00113 Selenicereus undatus HOM05D003014 ORTHO05D003233 1.5e-08 64.3 229 24.5
Sopen01g010120 Solanum pennellii HOM05D003014 ORTHO05D003233 1.5e-08 64.3 222 23.9
Lalb_Chr05g0224851 Lupinus albus HOM05D003014 ORTHO05D003233 3.3e-08 63.2 244 21.7
Psat0s672g0040 Pisum sativum HOM05D003014 ORTHO05D003233 3.3e-08 63.2 67 47.8
Migut.N01183 Erythranthe guttata HOM05D003014 ORTHO05D003233 5.6e-08 62.4 61 49.2
FAN20G1742 Fragaria x ananassa HOM05D003014 ORTHO05D003233 7.3e-08 62.0 245 24.1
Lalb_Chr20g0108391 Lupinus albus HOM05D003014 ORTHO05D003233 7.3e-08 62.0 60 50.0
SMO270G0033 Selaginella moellendorffii HOM05D003014 ORTHO05D003233 7.3e-08 62.0 61 45.9
SalBow6G1753 Salvia bowleyana HOM05D003014 ORTHO05D003233 9.5e-08 61.6 58 46.6
Psat7g225560 Pisum sativum HOM05D003014 ORTHO05D003233 1.2e-07 61.2 67 46.3
unitig_0.g90 Utricularia gibba HOM05D003014 ORTHO05D003233 1.2e-07 61.2 64 42.2
arahy.Tifrunner.gnm1.ann1.U584NJ Arachis hypogaea HOM05D003014 ORTHO05D003233 2.8e-07 60.1 68 39.7
Psat7g090720 Pisum sativum HOM05D003014 ORTHO05D003233 3.6e-07 59.7 61 49.2
Sopen01g009900 Solanum pennellii HOM05D003014 ORTHO05D003233 8.0e-07 58.5 221 24.4
Gohir.A03G188350 Gossypium hirsutum HOM05D003014 ORTHO05D003233 1.0e-06 58.2 198 26.3
HanXRQChr03g0068661 Helianthus annuus HOM05D003014 ORTHO05D003233 1.0e-06 58.2 240 22.9
Solyc01g014910.2 Solanum lycopersicum HOM05D003014 ORTHO05D003233 1.0e-06 58.2 221 24.0
Mapoly0126s0029 Marchantia polymorpha HOM05D003014 ORTHO05D003233 1.4e-06 57.8 195 26.2
Sopen09g010770 Solanum pennellii HOM05D003014 ORTHO05D003233 1.4e-06 57.8 221 23.5
arahy.Tifrunner.gnm1.ann1.DD1GZC Arachis hypogaea HOM05D003014 ORTHO05D003233 1.8e-06 57.4 202 21.8
Manes.05G175600 Manihot esculenta HOM05D003014 ORTHO05D003233 3.0e-06 56.6 213 22.1
SalBow6G6778 Salvia bowleyana HOM05D003014 ORTHO05D003233 3.0e-06 56.6 55 45.5
CAN.G1838.1 Capsicum annuum HOM05D003014 ORTHO05D003233 4.0e-06 56.2 239 23.8
HanXRQChr11g0324101 Helianthus annuus HOM05D000670 ORTHO05D000529 6.8e-06 55.5 64 46.9
Sopen09g010690 Solanum pennellii HOM05D003014 ORTHO05D003233 6.8e-06 55.5 225 23.1
Psat7g258400 Pisum sativum HOM05D000670 ORTHO05D000529 8.9e-06 55.1 54 48.1


User provided reference genes

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