Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0397700 Oryza sativa ssp. japonica HOM05D007048 ORTHO05D008811 2.0e-66 255.8 143 100.0
Manes.14G045100 Manihot esculenta HOM05D007048 ORTHO05D008811 6.3e-36 154.5 127 62.2
Haze_07101 Corylus avellana HOM05D007048 ORTHO05D008811 4.5e-34 148.3 127 58.3
PSO339G2722 Papaver somniferum HOM05D007048 ORTHO05D008811 1.3e-33 146.7 128 60.2
Actinidia18303 Actinidia chinensis HOM05D007048 ORTHO05D008811 2.3e-33 146.0 120 61.7
Sopen07g028330 Solanum pennellii HOM05D007048 ORTHO05D008820 2.3e-33 146.0 135 57.8
Aqoxy3G01543 Aquilegia oxysepala HOM05D007048 ORTHO05D008811 2.9e-33 145.6 115 63.5
Nitab4.5_0003119g0030 Nicotiana tabacum HOM05D007048 ORTHO05D008811 2.9e-33 145.6 143 56.6
Duzib068G0404 Durio zibethinus HOM05D007048 ORTHO05D008811 3.8e-33 145.2 135 56.3
Dinv23221 Davidia involucrata HOM05D007048 ORTHO05D008811 5.0e-33 144.8 132 56.8
TWI39G0039 Tripterygium wilfordii HOM05D007048 ORTHO05D008811 5.0e-33 144.8 121 59.5
CAN.G521.6 Capsicum annuum HOM05D007048 ORTHO05D008811 1.1e-32 143.7 135 56.3
Gohir.D07G051200 Gossypium hirsutum HOM05D007048 ORTHO05D008811 1.1e-32 143.7 118 62.7
Gorai.001G054300 Gossypium raimondii HOM05D007048 ORTHO05D008811 1.1e-32 143.7 118 62.7
Nitab4.5_0002584g0070 Nicotiana tabacum HOM05D007048 ORTHO05D008811 1.9e-32 142.9 143 56.6
Gohir.A07G046900 Gossypium hirsutum HOM05D007048 ORTHO05D008811 2.5e-32 142.5 118 61.9
PSO384G0987 Papaver somniferum HOM05D007048 ORTHO05D008811 2.5e-32 142.5 128 58.6
Solyc07g054400.3 Solanum lycopersicum HOM05D007048 ORTHO05D008811 2.5e-32 142.5 135 57.0
Thecc.03G140000 Theobroma cacao HOM05D007048 ORTHO05D008811 2.5e-32 142.5 120 60.0
Cpa.g.sc13.165 Carica papaya HOM05D007048 ORTHO05D008811 3.3e-32 142.1 126 58.7
SalBow1G8421 Salvia bowleyana HOM05D007048 ORTHO05D008811 3.3e-32 142.1 133 54.9
PGSC0003DMG400018389 Solanum tuberosum HOM05D007048 ORTHO05D008811 3.3e-32 142.1 120 62.5
Cfa018710 Carpinus fangiana HOM05D007048 ORTHO05D008811 4.3e-32 141.7 117 59.0
MELO3C035737.2 Cucumis melo HOM05D007048 ORTHO05D008811 4.3e-32 141.7 115 60.9
Peaxi162Scf01168g00014 Petunia axillaris HOM05D007048 ORTHO05D008811 4.3e-32 141.7 124 60.5
Potri.015G105900 Populus trichocarpa HOM05D007048 ORTHO05D008811 4.3e-32 141.7 130 56.2
RcHm_v2.0_Chr7g0188741 Rosa chinensis HOM05D007048 ORTHO05D008811 4.3e-32 141.7 113 62.8
Prupe.5G142300 Prunus persica HOM05D007048 ORTHO05D008811 5.6e-32 141.4 120 59.2
Rhsim08G0196900 Rhododendron simsii HOM05D007048 ORTHO05D008811 5.6e-32 141.4 121 62.0
TAR475G0007 Trochodendron aralioides HOM05D007048 ORTHO05D008811 5.6e-32 141.4 130 56.9
TAR629G1913 Trochodendron aralioides HOM05D007048 ORTHO05D008811 5.6e-32 141.4 130 56.9
Migut.D01184 Erythranthe guttata HOM05D007048 ORTHO05D008811 7.3e-32 141.0 127 56.7
Atru.chr6.1912 Acer truncatum HOM05D007048 ORTHO05D008811 9.5e-32 140.6 132 55.3
Sabra15G0126100 Salix brachista HOM05D007048 ORTHO05D008811 1.6e-31 139.8 128 55.5
Hma1.2p1_0664F.1_g199000 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 2.1e-31 139.4 117 59.8
QL10p000556 Quercus lobata HOM05D007048 ORTHO05D008811 2.8e-31 139.0 114 60.5
Sc22g0003410 Simmondsia chinensis HOM05D007048 ORTHO05D008811 2.8e-31 139.0 113 62.8
vmacro19180 Vaccinium macrocarpon HOM05D007048 ORTHO05D008811 2.8e-31 139.0 120 60.8
Ciclev10033023m.g Citrus clementina HOM05D007048 ORTHO05D008811 3.6e-31 138.7 123 58.5
CsaV3_1G009910 Cucumis sativus L. HOM05D007048 ORTHO05D008811 4.7e-31 138.3 114 60.5
FAN18G3224 Fragaria x ananassa HOM05D007048 ORTHO05D008811 4.7e-31 138.3 113 62.8
TWI14G0368 Tripterygium wilfordii HOM05D007048 ORTHO05D008811 8.0e-31 137.5 123 57.7
Cc04_g05890 Coffea canephora HOM05D007048 ORTHO05D008811 1.4e-30 136.7 135 55.6
Lj1g0016164 Lotus japonicus HOM05D007048 ORTHO05D008811 1.8e-30 136.3 110 63.6
MD06G1131300 Malus domestica HOM05D007048 ORTHO05D008811 2.3e-30 136.0 120 57.5
arahy.Tifrunner.gnm1.ann1.QNIR3T Arachis hypogaea HOM05D007048 ORTHO05D008811 4.0e-30 135.2 118 59.3
GSVIVG01008645001 Vitis vinifera HOM05D007048 ORTHO05D008811 4.0e-30 135.2 126 57.9
EL10Ac5g11295 Beta vulgaris HOM05D007048 ORTHO05D008811 5.2e-30 134.8 115 60.9
Sp6g13100 Schrenkiella parvula HOM05D007048 ORTHO05D008811 6.8e-30 134.4 137 51.8
A03p16450 Brassica napus HOM05D007048 ORTHO05D008811 8.9e-30 134.0 137 51.8
BraA03t10934Z Brassica rapa HOM05D007048 ORTHO05D008811 8.9e-30 134.0 137 51.8
CANSAT56G3502 Cannabis sativa HOM05D007048 ORTHO05D008811 8.9e-30 134.0 118 59.3
CiPaw.11G000300 Carya illinoinensis HOM05D007048 ORTHO05D008811 8.9e-30 134.0 131 56.5
CANSAT56G3230 Cannabis sativa HOM05D007048 ORTHO05D008811 1.2e-29 133.7 118 59.3
FAN08G0367 Fragaria x ananassa HOM05D006891 ORTHO05D008671 1.2e-29 133.7 107 62.6
arahy.Tifrunner.gnm1.ann1.8FCI62 Arachis hypogaea HOM05D007048 ORTHO05D008811 1.5e-29 133.3 110 61.8
Hund10045 Selenicereus undatus HOM05D007048 ORTHO05D008811 1.5e-29 133.3 139 50.4
Psat5g055240 Pisum sativum HOM05D007048 ORTHO05D008811 2.6e-29 132.5 113 61.9
Ah.02g114610 Amaranthus hybridus HOM05D007048 ORTHO05D008811 3.4e-29 132.1 127 55.1
BcaNung07188 Brassica carinata HOM05D007048 ORTHO05D008811 5.8e-29 131.3 137 51.1
C03p19340 Brassica napus HOM05D007048 ORTHO05D008811 5.8e-29 131.3 137 51.1
BolC3t14320H Brassica oleracea HOM05D007048 ORTHO05D008811 5.8e-29 131.3 137 51.1
MBI07_g41901_MAGBIO Magnolia biondii HOM05D007048 ORTHO05D008811 7.5e-29 131.0 133 51.9
Medtr3g098660 Medicago truncatula HOM05D007048 ORTHO05D008811 1.3e-28 130.2 120 58.3
SGA_v2.0_scaffold40G15679 Striga asiatica HOM05D007048 ORTHO05D008811 1.3e-28 130.2 153 47.7
Glyma.04G201000 Glycine max HOM05D007048 ORTHO05D008811 1.7e-28 129.8 110 59.1
ClCG03G004020 Citrullus lanatus HOM05D007048 ORTHO05D008811 2.2e-28 129.4 123 54.5
FAN04G3007 Fragaria x ananassa HOM05D007048 ORTHO05D008811 2.2e-28 129.4 108 62.0
Phvul.009G161500 Phaseolus vulgaris HOM05D007048 ORTHO05D008811 2.2e-28 129.4 103 64.1
VMungo1309G1627 Vigna mungo HOM05D007048 ORTHO05D008811 2.2e-28 129.4 110 60.9
AL8G25120 Arabidopsis lyrata HOM05D007048 ORTHO05D008811 3.7e-28 128.6 136 50.7
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 3.7e-28 128.6 120 56.7
AT5G50930 Arabidopsis thaliana HOM05D007048 ORTHO05D008811 4.9e-28 128.3 136 51.5
Lsat_1_v5_gn_5_10141 Lactuca sativa HOM05D007048 ORTHO05D008811 4.9e-28 128.3 136 52.2
PGR031G3844 Punica granatum HOM05D007048 ORTHO05D008811 4.9e-28 128.3 114 61.4
Thhalv10014960m.g Eutrema salsugineum HOM05D007048 ORTHO05D008811 1.1e-27 127.1 135 52.6
Lalb_Chr08g0237541 Lupinus albus HOM05D007048 ORTHO05D008811 1.1e-27 127.1 130 55.4
PGR031G2395 Punica granatum HOM05D007048 ORTHO05D008811 2.4e-27 125.9 114 59.6
Zm00001eb084850 Zea mays HOM05D007048 ORTHO05D008811 2.4e-27 125.9 102 68.6
Carub.0008s1094 Capsella rubella HOM05D007048 ORTHO05D008811 3.2e-27 125.6 135 50.4
Sed0017197 Sechium edule HOM05D007048 ORTHO05D008811 3.2e-27 125.6 114 54.4
HPP92_008245 Vanilla planifolia HOM05D007048 ORTHO05D008811 3.2e-27 125.6 120 57.5
CARHR257290 Cardamine hirsuta HOM05D007048 ORTHO05D008811 4.1e-27 125.2 136 50.7
PGR031G3072 Punica granatum HOM05D007048 ORTHO05D008811 4.1e-27 125.2 114 59.6
TPR.G21584 Trifolium pratense HOM05D007048 ORTHO05D008811 4.1e-27 125.2 110 60.9
arahy.Tifrunner.gnm1.ann1.CS080T Arachis hypogaea HOM05D007048 ORTHO05D008811 1.2e-26 123.6 131 54.2
Aa31LG3G7430 Aethionema arabicum HOM05D007048 ORTHO05D008811 2.0e-26 122.9 122 52.5
Glyma.06G164400 Glycine max HOM05D007048 ORTHO05D008811 2.7e-26 122.5 110 57.3
HanXRQChr10g0316061 Helianthus annuus HOM05D007048 ORTHO05D008811 1.3e-25 120.2 121 52.1
arahy.Tifrunner.gnm1.ann1.DD5QTF Arachis hypogaea HOM05D007048 ORTHO05D008811 5.0e-25 118.2 116 53.4
unitig_747.g21321 Utricularia gibba HOM05D007048 ORTHO05D008811 6.6e-25 117.9 151 43.0
MD14G1147700 Malus domestica HOM05D007048 ORTHO05D008811 5.6e-24 114.8 90 62.2
ATR0582G167 Amborella trichopoda HOM05D007048 ORTHO05D008811 2.1e-23 112.8 95 58.9
FvH4_5g09450 Fragaria vesca HOM05D007048 ORTHO05D008811 6.2e-23 111.3 83 66.3
Hma1.2p1_0664F.1_g198980 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 1.4e-22 110.2 91 61.5
Hma1.2p1_0664F.1_g198990 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 1.4e-22 110.2 79 67.1
Eucgr.K02194 Eucalyptus grandis HOM05D007048 ORTHO05D008811 5.2e-22 108.2 155 42.6
SEGI_10153 Sequoiadendron giganteum HOM05D007048 ORTHO05D008811 1.5e-21 106.7 126 50.8
AUR62041697 Chenopodium quinoa HOM05D007048 ORTHO05D008811 1.7e-20 103.2 90 58.9
PGR044G0448 Punica granatum HOM05D007048 ORTHO05D008811 1.7e-20 103.2 126 46.8
CSS0012628 Camellia sinensis var. sinensis HOM05D007048 ORTHO05D008811 2.9e-20 102.4 127 48.8
AUR62009534 Chenopodium quinoa HOM05D007048 ORTHO05D008811 2.9e-20 102.4 90 57.8
AUR62044083 Chenopodium quinoa HOM05D007048 ORTHO05D008811 4.9e-20 101.7 90 57.8
Nn3g16280 Nelumbo nucifera HOM05D007048 ORTHO05D008811 4.6e-18 95.1 76 64.5
Nn1g04900 Nelumbo nucifera HOM05D007048 ORTHO05D008811 5.0e-17 91.7 67 67.2
BcaB01g01606 Brassica carinata HOM05D007048 ORTHO05D008811 2.5e-16 89.4 91 50.5
AagrBONN_evm.TU.Sc2ySwM_362.2725 Anthoceros agrestis HOM05D007048 ORTHO05D008811 4.3e-16 88.6 118 43.2
CDE05G0753 Ceratophyllum demersum HOM05D000512 ORTHO05D000861 4.3e-16 88.6 83 57.8
Pp3c2_1780 Physcomitrium patens HOM05D007048 ORTHO05D008811 1.2e-15 87.0 122 42.6
FAN13G1437 Fragaria x ananassa HOM05D007048 ORTHO05D008811 8.1e-15 84.3 64 65.6
BcaB05g23641 Brassica carinata HOM05D007048 ORTHO05D008811 2.4e-11 72.8 70 51.4
Mapoly0109s0028 Marchantia polymorpha HOM05D007048 ORTHO05D008811 2.4e-11 72.8 87 43.7
Oeu009260.1 Olea europaea HOM05D007048 ORTHO05D008811 4.7e-07 58.5 39 66.7
COL.COLO4_37252 Corchorus olitorius HOM05D007048 ORTHO05D008811 6.8e-06 54.7 89 39.3


User provided reference genes

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