Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0395800 Oryza sativa ssp. japonica HOM05D006285 ORTHO05D007249 1.2e-77 293.5 189 100.0
Zm00001eb084980 Zea mays HOM05D006285 ORTHO05D007249 3.3e-24 115.9 194 47.4
PGR057G0008 Punica granatum HOM05D006285 ORTHO05D007249 1.4e-14 84.0 205 36.1
PGR119G0305 Punica granatum HOM05D006285 ORTHO05D007249 1.4e-14 84.0 205 36.1
ClCG06G001800 Citrullus lanatus HOM05D006285 ORTHO05D007249 3.4e-13 79.3 184 35.3
CsaV3_6G007840 Cucumis sativus L. HOM05D006285 ORTHO05D007249 8.4e-12 74.7 185 34.6
QL03p050117 Quercus lobata HOM05D006285 ORTHO05D007249 3.2e-11 72.8 187 31.6
PGR102G0288 Punica granatum HOM05D006285 ORTHO05D007249 5.5e-11 72.0 74 51.4
CiPaw.06G107800 Carya illinoinensis HOM05D006285 ORTHO05D007249 9.3e-11 71.2 187 31.6
MSTRG.8043 Avicennia marina HOM05D006285 ORTHO05D007249 1.2e-10 70.9 97 46.4
TAR374G0139 Trochodendron aralioides HOM05D006285 ORTHO05D007249 1.6e-10 70.5 76 51.3
Aqoxy5G03206 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 2.7e-10 69.7 141 35.5
Prupe.1G218500 Prunus persica HOM05D006285 ORTHO05D007249 3.5e-10 69.3 89 41.6
Sed0027998 Sechium edule HOM05D006285 ORTHO05D007249 3.5e-10 69.3 173 33.5
HPP92_023090 Vanilla planifolia HOM05D006285 ORTHO05D007249 3.5e-10 69.3 75 52.0
Manes.09G186200 Manihot esculenta HOM05D006285 ORTHO05D007249 4.6e-10 68.9 82 50.0
Haze_12478 Corylus avellana HOM05D006285 ORTHO05D007249 6.1e-10 68.6 81 48.1
Cfa009427 Carpinus fangiana HOM05D006285 ORTHO05D007249 7.9e-10 68.2 81 46.9
Eucgr.G01954 Eucalyptus grandis HOM05D006285 ORTHO05D007249 1.0e-09 67.8 87 46.0
TWI18G1468 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 1.0e-09 67.8 197 28.9
Duzib052G0121 Durio zibethinus HOM05D006285 ORTHO05D007249 1.3e-09 67.4 87 41.4
Potri.003G165000 Populus trichocarpa HOM05D006285 ORTHO05D007249 1.3e-09 67.4 84 47.6
CiPaw.05G103600 Carya illinoinensis HOM05D006285 ORTHO05D007249 1.8e-09 67.0 188 30.9
THA.LOC104825472 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 1.8e-09 67.0 88 46.6
AL6G23830 Arabidopsis lyrata HOM05D006285 ORTHO05D007249 2.3e-09 66.6 90 44.4
BolC2t06542H Brassica oleracea HOM05D006285 ORTHO05D007249 2.3e-09 66.6 88 46.6
Peaxi162Scf00128g00175 Petunia axillaris HOM05D006285 ORTHO05D007249 2.3e-09 66.6 76 48.7
Actinidia30601 Actinidia chinensis HOM05D006285 ORTHO05D007249 3.0e-09 66.2 74 48.6
MSTRG.467 Avicennia marina HOM05D006285 ORTHO05D007249 3.0e-09 66.2 82 45.1
C02p05990 Brassica napus HOM05D006285 ORTHO05D007249 3.0e-09 66.2 88 46.6
MD16G1127400 Malus domestica HOM05D006285 ORTHO05D007249 3.0e-09 66.2 92 41.3
ATR0582G164 Amborella trichopoda HOM05D006285 ORTHO05D007249 3.9e-09 65.9 93 41.9
CANSAT01G0254 Cannabis sativa HOM05D006285 ORTHO05D007249 3.9e-09 65.9 90 43.3
GSVIVG01000967001 Vitis vinifera HOM05D006285 ORTHO05D007249 3.9e-09 65.9 209 32.1
BcaB01g05368 Brassica carinata HOM05D006285 ORTHO05D007249 5.1e-09 65.5 88 42.0
A10p24990 Brassica napus HOM05D006285 ORTHO05D007249 6.7e-09 65.1 91 45.1
BolC9t59226H Brassica oleracea HOM05D006285 ORTHO05D007249 6.7e-09 65.1 91 45.1
BraA10t44561Z Brassica rapa HOM05D006285 ORTHO05D007249 6.7e-09 65.1 91 45.1
Gohir.A03G151500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 6.7e-09 65.1 88 42.0
Gohir.D02G174500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 6.7e-09 65.1 88 42.0
Gorai.005G196200 Gossypium raimondii HOM05D006285 ORTHO05D007249 6.7e-09 65.1 88 42.0
MD13G1127100 Malus domestica HOM05D006285 ORTHO05D007249 6.7e-09 65.1 90 41.1
BcaC04g19135 Brassica carinata HOM05D006285 ORTHO05D007249 8.7e-09 64.7 88 44.3
C03p06880 Brassica napus HOM05D006285 ORTHO05D007249 8.7e-09 64.7 88 42.0
C09p63860 Brassica napus HOM05D006285 ORTHO05D007249 8.7e-09 64.7 91 45.1
BolC3t13190H Brassica oleracea HOM05D006285 ORTHO05D007249 8.7e-09 64.7 88 42.0
MELO3C022348.2 Cucumis melo HOM05D006285 ORTHO05D007249 1.1e-08 64.3 179 33.5
HanXRQChr06g0175041 Helianthus annuus HOM05D006285 ORTHO05D007249 1.1e-08 64.3 76 42.1
PSO675G2785 Papaver somniferum HOM05D006285 ORTHO05D007249 1.5e-08 63.9 189 30.7
Sp6g30770 Schrenkiella parvula HOM05D006285 ORTHO05D007249 1.5e-08 63.9 91 42.9
Thecc.02G195800 Theobroma cacao HOM05D006285 ORTHO05D007249 1.5e-08 63.9 86 40.7
ECA246G0706 Erigeron canadensis HOM05D006285 ORTHO05D007249 1.9e-08 63.5 98 37.8
A03p05870 Brassica napus HOM05D006285 ORTHO05D007249 2.5e-08 63.2 88 42.0
BraA03t09926Z Brassica rapa HOM05D006285 ORTHO05D007249 2.5e-08 63.2 88 42.0
PSO732G0051 Papaver somniferum HOM05D006285 ORTHO05D007249 3.3e-08 62.8 185 30.8
RcHm_v2.0_Chr4g0429271 Rosa chinensis HOM05D006285 ORTHO05D007249 3.3e-08 62.8 85 45.9
Atru.chr11.2411 Acer truncatum HOM05D006285 ORTHO05D007249 4.3e-08 62.4 152 33.6
Gohir.D01G019500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 4.3e-08 62.4 87 44.8
Gorai.002G021800 Gossypium raimondii HOM05D006285 ORTHO05D007249 4.3e-08 62.4 87 44.8
PGSC0003DMG400006480 Solanum tuberosum HOM05D006285 ORTHO05D007249 5.7e-08 62.0 68 50.0
CDE06G1494 Ceratophyllum demersum HOM05D006285 ORTHO05D007249 7.4e-08 61.6 81 42.0
EL10Ac6g13588 Beta vulgaris HOM05D006285 ORTHO05D007249 9.7e-08 61.2 90 42.2
CSS0034430 Camellia sinensis var. sinensis HOM05D006285 ORTHO05D007249 9.7e-08 61.2 86 43.0
CAN.G1179.3 Capsicum annuum HOM05D006285 ORTHO05D000105 1.3e-07 60.8 96 39.6
Ciclev10032858m.g Citrus clementina HOM05D006285 ORTHO05D007249 1.3e-07 60.8 178 30.9
THA.LOC104803190 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 1.3e-07 60.8 81 45.7
Duzib248G1203 Durio zibethinus HOM05D006285 ORTHO05D007249 1.6e-07 60.5 80 42.5
FvH4_4g23000 Fragaria vesca HOM05D006285 ORTHO05D007249 1.6e-07 60.5 85 43.5
FAN02G1879 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.6e-07 60.5 89 39.3
Carub.0006s1139 Capsella rubella HOM05D006285 ORTHO05D007249 2.2e-07 60.1 92 41.3
Dinv19860 Davidia involucrata HOM05D006285 ORTHO05D007249 2.2e-07 60.1 85 38.8
HanXRQChr17g0540471 Helianthus annuus HOM05D006285 ORTHO05D007249 2.2e-07 60.1 86 43.0
TAR622G0521 Trochodendron aralioides HOM05D006285 ORTHO05D007249 2.2e-07 60.1 86 39.5
RcHm_v2.0_Chr2g0146371 Rosa chinensis HOM05D001047 ORTHO05D000768 2.8e-07 59.7 86 40.7
Actinidia09609 Actinidia chinensis HOM05D006285 ORTHO05D007249 3.7e-07 59.3 109 37.6
BcaNung01870 Brassica carinata HOM05D006285 ORTHO05D007249 4.8e-07 58.9 81 45.7
BcaNung01871 Brassica carinata HOM05D006285 ORTHO05D007249 4.8e-07 58.9 81 45.7
MELO3C017797.2 Cucumis melo HOM05D006285 ORTHO05D007249 4.8e-07 58.9 92 38.0
Migut.K01038 Erythranthe guttata HOM05D006285 ORTHO05D007249 4.8e-07 58.9 79 41.8
Os03g0181100 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 4.8e-07 58.9 94 40.4
AT5G13220 Arabidopsis thaliana HOM05D006285 ORTHO05D007249 6.3e-07 58.5 85 43.5
Aa31LG3G14440 Aethionema arabicum HOM05D006285 ORTHO05D007249 8.2e-07 58.2 82 42.7
A02p01780 Brassica napus HOM05D006285 ORTHO05D007249 8.2e-07 58.2 81 44.4
BraA02t05154Z Brassica rapa HOM05D006285 ORTHO05D007249 8.2e-07 58.2 81 44.4
Rhsim12G0019500 Rhododendron simsii HOM05D006285 ORTHO05D007249 8.2e-07 58.2 80 45.0
BcaNung01167 Brassica carinata HOM05D006285 ORTHO05D007249 1.1e-06 57.8 81 45.7
FvH4_6g35140 Fragaria vesca HOM05D001047 ORTHO05D000768 1.1e-06 57.8 94 37.2
Lsat_1_v5_gn_3_31461 Lactuca sativa HOM05D006285 ORTHO05D007249 1.1e-06 57.8 81 46.9
Zm00001eb005990 Zea mays HOM05D001047 ORTHO05D000768 1.1e-06 57.8 100 40.0
Eucgr.B03545 Eucalyptus grandis HOM05D006285 ORTHO05D007249 1.4e-06 57.4 87 42.5
Sc04g0010480 Simmondsia chinensis HOM05D006285 ORTHO05D007249 1.4e-06 57.4 88 38.6
THA.LOC104806552 Tarenaya hassleriana HOM05D001047 ORTHO05D000768 1.4e-06 57.4 108 37.0
BcaB03g12929 Brassica carinata HOM05D001047 ORTHO05D000768 1.8e-06 57.0 116 35.3
CsaV3_3G030830 Cucumis sativus L. HOM05D001047 ORTHO05D000768 1.8e-06 57.0 112 34.8
FAN09G2579 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.8e-06 57.0 89 38.2
FAN14G3719 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.8e-06 57.0 89 38.2
Actinidia22128 Actinidia chinensis HOM05D006285 ORTHO05D007249 2.4e-06 56.6 74 44.6
ECA236G0223 Erigeron canadensis HOM05D001047 ORTHO05D000768 2.4e-06 56.6 79 43.0
Oeu044502.1 Olea europaea HOM05D006285 ORTHO05D007249 2.4e-06 56.6 79 48.1
Actinidia34008 Actinidia chinensis HOM05D006285 ORTHO05D007249 3.1e-06 56.2 87 39.1
Thhalv10014724m.g Eutrema salsugineum HOM05D006285 ORTHO05D007249 4.1e-06 55.8 84 40.5
MELO3C022678.2 Cucumis melo HOM05D001047 ORTHO05D000768 5.3e-06 55.5 112 33.9
AT1G19180 Arabidopsis thaliana HOM05D001047 ORTHO05D000768 6.9e-06 55.1 118 33.9
CsaV3_4G002460 Cucumis sativus L. HOM05D006285 ORTHO05D007249 6.9e-06 55.1 92 38.0
HanXRQChr04g0125901 Helianthus annuus HOM05D001047 ORTHO05D000768 6.9e-06 55.1 81 39.5
Psat2g175680 Pisum sativum HOM05D001047 ORTHO05D000768 6.9e-06 55.1 83 41.0
Sabra01G0044900 Salix brachista HOM05D006285 ORTHO05D007249 6.9e-06 55.1 76 44.7
Sed0024828 Sechium edule HOM05D002924 ORTHO05D003122 6.9e-06 55.1 80 38.8
Zm00001eb006000 Zea mays HOM05D001047 ORTHO05D000768 6.9e-06 55.1 82 41.5
BcaC05g25812 Brassica carinata HOM05D000130 ORTHO05D000768 9.0e-06 54.7 134 31.3
FAN17G1869 Fragaria x ananassa HOM05D006285 ORTHO05D007249 9.0e-06 54.7 78 43.6
Lsat_1_v5_gn_5_137041 Lactuca sativa HOM05D001047 ORTHO05D000768 9.0e-06 54.7 111 32.4
Nitab4.5_0000343g0360 Nicotiana tabacum HOM05D001047 ORTHO05D000768 9.0e-06 54.7 95 41.1
Sed0008794 Sechium edule HOM05D002924 ORTHO05D003122 9.0e-06 54.7 83 39.8


User provided reference genes

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