Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0389100 Oryza sativa ssp. japonica HOM05D002723 ORTHO05D295225 5.7e-289 997.3 663 100.0
Zm00001eb180890 Zea mays HOM05D002723 ORTHO05D003240 4.0e-24 117.5 143 52.4
Zm00001eb241810 Zea mays HOM05D002723 ORTHO05D003240 2.0e-23 115.2 61 86.9
Os02g0510200 Oryza sativa ssp. japonica HOM05D002723 ORTHO05D003240 1.4e-21 109.0 60 86.7
Os04g0389800 Oryza sativa ssp. japonica HOM05D002723 ORTHO05D003240 1.4e-21 109.0 63 84.1
VMungo1309G1476 Vigna mungo HOM05D002723 ORTHO05D003240 5.0e-19 100.5 69 75.4
Phvul.006G187400 Phaseolus vulgaris HOM05D002723 ORTHO05D003240 1.9e-18 98.6 69 75.4
HPP92_000885 Vanilla planifolia HOM05D002723 ORTHO05D003240 2.5e-18 98.2 66 75.8
Phvul.009G166100 Phaseolus vulgaris HOM05D002723 ORTHO05D003240 3.3e-18 97.8 69 73.9
HPP92_001832 Vanilla planifolia HOM05D002723 ORTHO05D003240 3.3e-18 97.8 66 74.2
Manes.06G120100 Manihot esculenta HOM05D002723 ORTHO05D003240 4.3e-18 97.4 70 74.3
QL10p002814 Quercus lobata HOM05D002723 ORTHO05D003240 4.3e-18 97.4 98 56.1
CANSAT80G2425 Cannabis sativa HOM05D002723 ORTHO05D003240 9.5e-18 96.3 62 77.4
HPP92_004961 Vanilla planifolia HOM05D002723 ORTHO05D003240 9.5e-18 96.3 62 77.4
Cc10_g00510 Coffea canephora HOM05D002723 ORTHO05D003240 1.2e-17 95.9 69 71.0
Glyma.15G072500 Glycine max HOM05D002723 ORTHO05D003240 1.2e-17 95.9 69 73.9
Lj9P479T33 Lonicera japonica HOM05D002723 ORTHO05D003240 1.2e-17 95.9 71 71.8
Lsat_1_v5_gn_4_80820 Lactuca sativa HOM05D002723 ORTHO05D003240 1.6e-17 95.5 68 70.6
SMO298G0030 Selaginella moellendorffii HOM05D002723 ORTHO05D003240 1.6e-17 95.5 68 73.5
Glyma.13G241000 Glycine max HOM05D002723 ORTHO05D003240 2.8e-17 94.7 68 73.5
MBI07_g39450_MAGBIO Magnolia biondii HOM05D002723 ORTHO05D003240 2.8e-17 94.7 66 71.2
Nitab4.5_0010961g0010 Nicotiana tabacum HOM05D002723 ORTHO05D003240 2.8e-17 94.7 70 70.0
VMungo0540G1422 Vigna mungo HOM05D002723 ORTHO05D003240 2.8e-17 94.7 68 73.5
Aqoxy3G00597 Aquilegia oxysepala HOM05D002723 ORTHO05D003240 3.6e-17 94.4 67 71.6
Rhsim08G0190500 Rhododendron simsii HOM05D002723 ORTHO05D003240 3.6e-17 94.4 69 68.1
arahy.Tifrunner.gnm1.ann1.KGMC0X Arachis hypogaea HOM05D002723 ORTHO05D003240 4.7e-17 94.0 62 77.4
Duzib175G0008 Durio zibethinus HOM05D002723 ORTHO05D003240 4.7e-17 94.0 62 77.4
Aa31LG4G17180 Aethionema arabicum HOM05D002723 ORTHO05D003240 6.2e-17 93.6 62 77.4
arahy.Tifrunner.gnm1.ann1.881M8L Arachis hypogaea HOM05D002723 ORTHO05D003240 6.2e-17 93.6 62 77.4
MD06G1028700 Malus domestica HOM05D002723 ORTHO05D003240 6.2e-17 93.6 62 75.8
Mapoly0088s0092 Marchantia polymorpha HOM05D002723 ORTHO05D003240 6.2e-17 93.6 64 75.0
Prupe.8G001300 Prunus persica HOM05D002723 ORTHO05D003240 6.2e-17 93.6 62 75.8
Duzib268G0783 Durio zibethinus HOM05D002723 ORTHO05D003240 8.0e-17 93.2 62 75.8
Gohir.A02G012300 Gossypium hirsutum HOM05D002723 ORTHO05D003240 8.0e-17 93.2 62 75.8
Gohir.D02G013100 Gossypium hirsutum HOM05D002723 ORTHO05D003240 8.0e-17 93.2 62 75.8
Gorai.005G016600 Gossypium raimondii HOM05D002723 ORTHO05D003240 8.0e-17 93.2 62 75.8
MD10G1013700 Malus domestica HOM05D002723 ORTHO05D003240 8.0e-17 93.2 62 75.8
Thecc.04G176500 Theobroma cacao HOM05D002723 ORTHO05D003240 8.0e-17 93.2 62 75.8
HanXRQChr09g0273191 Helianthus annuus HOM05D002723 ORTHO05D003240 1.1e-16 92.8 66 71.2
Sabra15G0117900 Salix brachista HOM05D002723 ORTHO05D003240 1.1e-16 92.8 62 75.8
Sed0003955 Sechium edule HOM05D002723 ORTHO05D003240 1.1e-16 92.8 62 77.4
THA.LOC104818184 Tarenaya hassleriana HOM05D002723 ORTHO05D003240 1.1e-16 92.8 62 77.4
Cpa.g.sc13.109 Carica papaya HOM05D002723 ORTHO05D003240 1.4e-16 92.4 62 77.4
Ciclev10030907m.g Citrus clementina HOM05D002723 ORTHO05D003240 1.4e-16 92.4 62 77.4
Duzib212G0411 Durio zibethinus HOM05D002723 ORTHO05D003240 1.4e-16 92.4 62 75.8
Potri.015G097200 Populus trichocarpa HOM05D002723 ORTHO05D003240 1.4e-16 92.4 62 75.8
EL10Ac5g11406 Beta vulgaris HOM05D002723 ORTHO05D003240 1.8e-16 92.0 62 74.2
Glyma.04G196100 Glycine max HOM05D002723 ORTHO05D003240 1.8e-16 92.0 67 73.1
Medtr2g013120 Medicago truncatula HOM05D002723 ORTHO05D003240 1.8e-16 92.0 62 75.8
Nitab4.5_0011199g0020 Nicotiana tabacum HOM05D002723 ORTHO05D003240 1.8e-16 92.0 70 67.1
Sp5g13420 Schrenkiella parvula HOM05D002723 ORTHO05D003240 1.8e-16 92.0 62 75.8
Sed0017429 Sechium edule HOM05D002723 ORTHO05D003240 1.8e-16 92.0 66 72.7
BcaB05g23006 Brassica carinata HOM05D002723 ORTHO05D003240 2.3e-16 91.7 62 75.8
BcaC09g49880 Brassica carinata HOM05D002723 ORTHO05D003240 2.3e-16 91.7 62 75.8
A01p25340 Brassica napus HOM05D002723 ORTHO05D003240 2.3e-16 91.7 62 75.8
C01p32280 Brassica napus HOM05D002723 ORTHO05D003240 2.3e-16 91.7 62 75.8
BolC1t03114H Brassica oleracea HOM05D002723 ORTHO05D003240 2.3e-16 91.7 62 75.8
BraA01t02444Z Brassica rapa HOM05D002723 ORTHO05D003240 2.3e-16 91.7 62 75.8
Ca_16049_v3 Cicer arietinum L. HOM05D002723 ORTHO05D003240 2.3e-16 91.7 62 75.8
Lj1g0017329 Lotus japonicus HOM05D002723 ORTHO05D003240 2.3e-16 91.7 69 69.6
Medtr3g099190 Medicago truncatula HOM05D002723 ORTHO05D003240 2.3e-16 91.7 67 70.1
Nn5g28177 Nelumbo nucifera HOM05D002723 ORTHO05D003240 2.3e-16 91.7 62 75.8
Peaxi162Scf00591g00413 Petunia axillaris HOM05D002723 ORTHO05D003240 2.3e-16 91.7 67 68.7
QL10p002843 Quercus lobata HOM05D002723 ORTHO05D003240 2.3e-16 91.7 118 46.6
RcHm_v2.0_Chr6g0249401 Rosa chinensis HOM05D002723 ORTHO05D003240 2.3e-16 91.7 62 74.2
Gohir.D10G128000 Gossypium hirsutum HOM05D002723 ORTHO05D003240 3.1e-16 91.3 62 75.8
Gorai.011G141100 Gossypium raimondii HOM05D002723 ORTHO05D003240 3.1e-16 91.3 62 75.8
Lj6g0017314 Lotus japonicus HOM05D002723 ORTHO05D003240 3.1e-16 91.3 69 71.0
Oeu005003.1 Olea europaea HOM05D002723 ORTHO05D003240 3.1e-16 91.3 62 74.2
Peaxi162Scf00377g00074 Petunia axillaris HOM05D002723 ORTHO05D003240 3.1e-16 91.3 62 74.2
Potri.012G098300 Populus trichocarpa HOM05D002723 ORTHO05D003240 3.1e-16 91.3 62 75.8
Prupe.5G043100 Prunus persica HOM05D002723 ORTHO05D003240 3.1e-16 91.3 62 74.2
Sabra12G0071700 Salix brachista HOM05D002723 ORTHO05D003240 3.1e-16 91.3 67 71.6
Solyc07g061940.4 Solanum lycopersicum HOM05D002723 ORTHO05D003240 3.1e-16 91.3 115 48.7
Sopen07g030210 Solanum pennellii HOM05D002723 ORTHO05D003240 3.1e-16 91.3 115 48.7
PGSC0003DMG400007078 Solanum tuberosum HOM05D002723 ORTHO05D003240 3.1e-16 91.3 115 48.7
SGA_v2.0_scaffold215G42341 Striga asiatica HOM05D002723 ORTHO05D003240 3.1e-16 91.3 67 70.1
TWI56G0015 Tripterygium wilfordii HOM05D002723 ORTHO05D003240 3.1e-16 91.3 62 75.8
AagrBONN_evm.TU.Sc2ySwM_344.1740 Anthoceros agrestis HOM05D002723 ORTHO05D003240 4.0e-16 90.9 62 74.2
Migut.I00533 Erythranthe guttata HOM05D002723 ORTHO05D003240 4.0e-16 90.9 70 67.1
Glyma.06G169700 Glycine max HOM05D002723 ORTHO05D003240 4.0e-16 90.9 143 44.1
Gohir.A10G138800 Gossypium hirsutum HOM05D002723 ORTHO05D003240 4.0e-16 90.9 62 75.8
TAR629G0881 Trochodendron aralioides HOM05D002723 ORTHO05D003240 4.0e-16 90.9 62 75.8
Ah.11g045440 Amaranthus hybridus HOM05D002723 ORTHO05D003240 5.2e-16 90.5 62 74.2
AL5G28010 Arabidopsis lyrata HOM05D002723 ORTHO05D003240 5.2e-16 90.5 62 74.2
AT3G48560 Arabidopsis thaliana HOM05D002723 ORTHO05D003240 5.2e-16 90.5 62 74.2
CSS0023817 Camellia sinensis var. sinensis HOM05D002723 ORTHO05D003240 5.2e-16 90.5 69 69.6
CSS0024943 Camellia sinensis var. sinensis HOM05D002723 ORTHO05D003240 5.2e-16 90.5 69 69.6
Carub.0005s1475 Capsella rubella HOM05D002723 ORTHO05D003240 5.2e-16 90.5 67 70.1
CARHR157360 Cardamine hirsuta HOM05D002723 ORTHO05D003240 5.2e-16 90.5 62 74.2
Eucgr.B00108 Eucalyptus grandis HOM05D002723 ORTHO05D003240 5.2e-16 90.5 67 68.7
FvH4_7g06770 Fragaria vesca HOM05D002723 ORTHO05D003240 5.2e-16 90.5 62 74.2
FAN03G1565 Fragaria x ananassa HOM05D002723 ORTHO05D003240 5.2e-16 90.5 62 74.2
FAN06G1916 Fragaria x ananassa HOM05D002723 ORTHO05D003240 5.2e-16 90.5 62 74.2
Nn5g28176 Nelumbo nucifera HOM05D002723 ORTHO05D003240 5.2e-16 90.5 62 74.2
Psat5g051480 Pisum sativum HOM05D002723 ORTHO05D003240 5.2e-16 90.5 62 75.8
PGR083G1230 Punica granatum HOM05D002723 ORTHO05D003240 5.2e-16 90.5 62 72.6
RcHm_v2.0_Chr7g0208791 Rosa chinensis HOM05D002723 ORTHO05D003240 5.2e-16 90.5 62 74.2
SMO118G0217 Selaginella moellendorffii HOM05D002723 ORTHO05D003240 5.2e-16 90.5 64 71.9
SEGI_17803 Sequoiadendron giganteum HOM05D002723 ORTHO05D003240 5.2e-16 90.5 62 71.0
Solyc03g044330.1 Solanum lycopersicum HOM05D002723 ORTHO05D003240 5.2e-16 90.5 115 46.1
Sopen03g008440 Solanum pennellii HOM05D002723 ORTHO05D003240 5.2e-16 90.5 67 70.1
THA.LOC104821520 Tarenaya hassleriana HOM05D002723 ORTHO05D003240 5.2e-16 90.5 62 75.8
Actinidia25568 Actinidia chinensis HOM05D002723 ORTHO05D003240 6.8e-16 90.1 62 72.6
CAN.G46.9 Capsicum annuum HOM05D002723 ORTHO05D003240 6.8e-16 90.1 70 67.1
Migut.D01268 Erythranthe guttata HOM05D002723 ORTHO05D003240 6.8e-16 90.1 70 67.1
MBI16_g26408_MAGBIO Magnolia biondii HOM05D002723 ORTHO05D003240 6.8e-16 90.1 62 71.0
Pp3c10_21800 Physcomitrium patens HOM05D002723 ORTHO05D003240 6.8e-16 90.1 62 74.2
Pp3c20_22440 Physcomitrium patens HOM05D002723 ORTHO05D003240 6.8e-16 90.1 62 74.2
Cfa018790 Carpinus fangiana HOM05D002723 ORTHO05D003240 8.9e-16 89.7 69 66.7
AUR62029606 Chenopodium quinoa HOM05D002723 ORTHO05D003240 8.9e-16 89.7 62 72.6
DCAR_021621 Daucus carota HOM05D002723 ORTHO05D003240 8.9e-16 89.7 62 74.2
Thhalv10010177m.g Eutrema salsugineum HOM05D002723 ORTHO05D003240 8.9e-16 89.7 62 75.8
Lalb_Chr20g0121961 Lupinus albus HOM05D002723 ORTHO05D003240 8.9e-16 89.7 62 74.2
Psat1g205600 Pisum sativum HOM05D002723 ORTHO05D003240 8.9e-16 89.7 62 75.8
TAR371G0575 Trochodendron aralioides HOM05D002723 ORTHO05D003240 8.9e-16 89.7 62 74.2
Cfa010011 Carpinus fangiana HOM05D002723 ORTHO05D003240 1.2e-15 89.4 69 66.7
AUR62034831 Chenopodium quinoa HOM05D002723 ORTHO05D003240 1.2e-15 89.4 62 72.6
FAN10G3895 Fragaria x ananassa HOM05D002723 ORTHO05D003240 1.2e-15 89.4 62 72.6
HanXRQChr02g0034691 Helianthus annuus HOM05D002723 ORTHO05D003240 1.2e-15 89.4 62 71.0
PGSC0003DMG400034102 Solanum tuberosum HOM05D002723 ORTHO05D003240 1.2e-15 89.4 142 43.0
unitig_26.g9287 Utricularia gibba HOM05D002723 ORTHO05D003240 1.2e-15 89.4 67 70.1
CiPaw.11G006500 Carya illinoinensis HOM05D002723 ORTHO05D003240 1.5e-15 89.0 62 72.6
CsaV3_1G000560 Cucumis sativus L. HOM05D002723 ORTHO05D003240 1.5e-15 89.0 69 68.1
Solyc06g059880.3 Solanum lycopersicum HOM05D002723 ORTHO05D003240 1.5e-15 89.0 62 71.0
Actinidia36724 Actinidia chinensis HOM05D002723 ORTHO05D003240 2.0e-15 88.6 62 69.4
CBR_g42125 Chara braunii HOM05D002723 ORTHO05D003240 2.0e-15 88.6 62 69.4
SGA_v2.0_scaffold649G53352 Striga asiatica HOM05D002723 ORTHO05D003240 2.0e-15 88.6 67 68.7
ClCG06G017910 Citrullus lanatus HOM05D002723 ORTHO05D003240 2.6e-15 88.2 62 74.2
MELO3C026205.2 Cucumis melo HOM05D002723 ORTHO05D003240 2.6e-15 88.2 62 74.2
Dinv23153 Davidia involucrata HOM05D002723 ORTHO05D003240 2.6e-15 88.2 62 72.6
Thhalv10011030m.g Eutrema salsugineum HOM05D002723 ORTHO05D003240 2.6e-15 88.2 62 74.2
Sc22g0003800 Simmondsia chinensis HOM05D002723 ORTHO05D003240 2.6e-15 88.2 72 63.9
Aqoxy5G00561 Aquilegia oxysepala HOM05D002723 ORTHO05D003240 3.4e-15 87.8 62 72.6
CBR_g18887 Chara braunii HOM05D002723 ORTHO05D003240 3.4e-15 87.8 62 74.2
Ca_00309_v3 Cicer arietinum L. HOM05D002723 ORTHO05D003240 3.4e-15 87.8 69 68.1
Ca_00314_v3 Cicer arietinum L. HOM05D002723 ORTHO05D003240 3.4e-15 87.8 69 68.1
Haze_07132 Corylus avellana HOM05D002723 ORTHO05D003240 3.4e-15 87.8 69 66.7
Haze_07133 Corylus avellana HOM05D002723 ORTHO05D003240 3.4e-15 87.8 69 66.7
FAN01G2771 Fragaria x ananassa HOM05D002723 ORTHO05D003240 3.4e-15 87.8 62 72.6
Oeu018541.1 Olea europaea HOM05D002723 ORTHO05D003240 3.4e-15 87.8 62 72.6
PGSC0003DMG400013027 Solanum tuberosum HOM05D002723 ORTHO05D003240 3.4e-15 87.8 62 71.0
PSO017G3090 Papaver somniferum HOM05D002723 ORTHO05D003240 4.4e-15 87.4 66 68.2
PSO478G0593 Papaver somniferum HOM05D002723 ORTHO05D003240 4.4e-15 87.4 66 68.2
TPR.G14204 Trifolium pratense HOM05D002723 ORTHO05D003240 4.4e-15 87.4 137 48.2
CBR_g8138 Chara braunii HOM05D002723 ORTHO05D003240 5.8e-15 87.0 64 65.6
ECA232G1339 Erigeron canadensis HOM05D002723 ORTHO05D003240 5.8e-15 87.0 62 71.0
Gohir.D02G013000 Gossypium hirsutum HOM05D002723 ORTHO05D003240 5.8e-15 87.0 65 69.2
Gorai.005G016500 Gossypium raimondii HOM05D002723 ORTHO05D003240 5.8e-15 87.0 65 69.2
Nitab4.5_0001530g0160 Nicotiana tabacum HOM05D002723 ORTHO05D003240 5.8e-15 87.0 62 71.0
Dinv11176 Davidia involucrata HOM05D002723 ORTHO05D003240 7.5e-15 86.7 62 71.0
Eucgr.K02720 Eucalyptus grandis HOM05D002723 ORTHO05D003240 7.5e-15 86.7 145 52.4
Hma1.2p1_0014F.1_g009360 Hydrangea macrophylla HOM05D002723 ORTHO05D003240 7.5e-15 86.7 67 67.2
PRCOL_00003526 Prasinoderma coloniale HOM05D002723 ORTHO05D003240 7.5e-15 86.7 73 63.0
Cre09.g386758 Chlamydomonas reinhardtii HOM05D002723 ORTHO05D003240 1.3e-14 85.9 62 74.2
MCO08G154 Micromonas commoda HOM05D002723 ORTHO05D003240 1.3e-14 85.9 65 70.8
ATR0561G089 Amborella trichopoda HOM05D002723 ORTHO05D003240 1.7e-14 85.5 62 69.4
Dinv02539 Davidia involucrata HOM05D002723 ORTHO05D003240 1.7e-14 85.5 62 71.0
Manes.15G161400 Manihot esculenta HOM05D002723 ORTHO05D003240 1.7e-14 85.5 59 74.6
CBR_g8110 Chara braunii HOM05D002723 ORTHO05D003240 2.2e-14 85.1 64 65.6
CBR_g8113 Chara braunii HOM05D002723 ORTHO05D003240 2.2e-14 85.1 64 65.6
Nn1g08711 Nelumbo nucifera HOM05D002723 ORTHO05D003240 2.2e-14 85.1 62 71.0
TWI12G0787 Tripterygium wilfordii HOM05D002723 ORTHO05D003240 2.2e-14 85.1 62 72.6
MSTRG.11276 Avicennia marina HOM05D002723 ORTHO05D003240 2.9e-14 84.7 67 65.7
DCAR_007493 Daucus carota HOM05D002723 ORTHO05D003240 3.7e-14 84.3 62 69.4
A05p03300 Brassica napus HOM05D002723 ORTHO05D003240 4.9e-14 84.0 62 71.0
BraA05t19319Z Brassica rapa HOM05D002723 ORTHO05D003240 4.9e-14 84.0 62 71.0
Medtr2g027220 Medicago truncatula HOM05D002723 ORTHO05D003240 4.9e-14 84.0 58 74.1
Gohir.A02G012201 Gossypium hirsutum HOM05D002723 ORTHO05D003240 6.4e-14 83.6 65 66.2
CBR_g8112 Chara braunii HOM05D002723 ORTHO05D003240 8.3e-14 83.2 62 66.1
SHI14331 Sapria himalayana HOM05D002723 ORTHO05D003240 8.3e-14 83.2 57 75.4
AUR62003521 Chenopodium quinoa HOM05D002723 ORTHO05D003240 3.2e-13 81.3 67 59.7
TWI32G0594 Tripterygium wilfordii HOM05D002723 ORTHO05D003240 7.0e-13 80.1 62 71.0
GSVIVG01018586001 Vitis vinifera HOM05D002723 ORTHO05D003240 1.6e-12 79.0 68 61.8
Ciclev10007130m.g Citrus clementina HOM05D002723 ORTHO05D003240 2.1e-12 78.6 62 67.7
vmacro23016 Vaccinium macrocarpon HOM05D002723 ORTHO05D003240 2.7e-12 78.2 62 62.9
C08p23620 Brassica napus HOM05D002723 ORTHO05D028085 2.3e-11 75.1 62 61.3
BolC8t49991H Brassica oleracea HOM05D002723 ORTHO05D028085 2.3e-11 75.1 62 61.3
AUR62017833 Chenopodium quinoa HOM05D002723 ORTHO05D003240 2.3e-11 75.1 67 55.2
GSVIVG01033088001 Vitis vinifera HOM05D002723 ORTHO05D003240 7.3e-10 70.1 50 70.0
MBI16_g31470_MAGBIO Magnolia biondii HOM05D002723 ORTHO05D003240 3.6e-09 67.8 62 61.3
Lsat_1_v5_gn_1_33140 Lactuca sativa HOM05D002723 ORTHO05D003240 4.7e-09 67.4 55 61.8
Manes.06G001200 Manihot esculenta HOM05D002723 ORTHO05D003240 1.4e-08 65.9 44 72.7
Manes.17G007500 Manihot esculenta HOM05D002723 ORTHO05D003240 2.3e-08 65.1 47 72.3
Migut.N00877 Erythranthe guttata HOM05D002723 ORTHO05D003240 5.2e-08 63.9 49 61.2


User provided reference genes

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