Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0337300 Oryza sativa ssp. japonica HOM05D002786 ORTHO05D022444 1.5e-26 122.1 63 100.0
Os02g0474700 Oryza sativa ssp. japonica HOM05D002786 ORTHO05D003493 3.5e-23 110.9 63 87.3
Zm00001eb241000 Zea mays HOM05D002786 ORTHO05D003493 8.7e-22 106.3 63 81.0
Zm00001eb180520 Zea mays HOM05D002786 ORTHO05D003493 2.5e-21 104.8 63 82.5
Actinidia35908 Actinidia chinensis HOM05D002786 ORTHO05D003493 1.6e-20 102.1 61 80.3
Thecc.04G180600 Theobroma cacao HOM05D002786 ORTHO05D003493 2.1e-20 101.7 61 77.0
Solyc09g098240.4 Solanum lycopersicum HOM05D002786 ORTHO05D003493 2.8e-20 101.3 61 82.0
Nn7g37146 Nelumbo nucifera HOM05D002786 ORTHO05D003493 3.7e-20 100.9 61 80.3
DCAR_026823 Daucus carota HOM05D002786 ORTHO05D003493 4.8e-20 100.5 61 78.7
Prupe.1G180500 Prunus persica HOM05D002786 ORTHO05D003493 6.3e-20 100.1 61 78.7
HPP92_013645 Vanilla planifolia HOM05D002786 ORTHO05D022444 6.3e-20 100.1 59 79.7
GSVIVG01031670001 Vitis vinifera HOM05D002786 ORTHO05D003493 6.3e-20 100.1 61 78.7
Atru.chr3.1801 Acer truncatum HOM05D002786 ORTHO05D003493 1.1e-19 99.4 61 77.0
CSS0033102 Camellia sinensis var. sinensis HOM05D002786 ORTHO05D003493 1.4e-19 99.0 60 78.3
FvH4_4g12200 Fragaria vesca HOM05D002786 ORTHO05D003493 1.4e-19 99.0 61 77.0
FAN12G0646 Fragaria x ananassa HOM05D002786 ORTHO05D003493 1.4e-19 99.0 61 77.0
FAN12G1472 Fragaria x ananassa HOM05D002786 ORTHO05D003493 1.4e-19 99.0 61 77.0
FAN17G1115 Fragaria x ananassa HOM05D002786 ORTHO05D003493 1.4e-19 99.0 61 77.0
FAN22G0173 Fragaria x ananassa HOM05D002786 ORTHO05D003493 1.4e-19 99.0 61 77.0
Nitab4.5_0001687g0080 Nicotiana tabacum HOM05D002786 ORTHO05D003493 1.4e-19 99.0 60 81.7
Ciclev10018740m.g Citrus clementina HOM05D002786 ORTHO05D003493 1.8e-19 98.6 61 77.0
Cc03_g10590 Coffea canephora HOM05D002786 ORTHO05D003493 1.8e-19 98.6 61 75.4
Lj6A731T90 Lonicera japonica HOM05D002786 ORTHO05D003493 1.8e-19 98.6 61 75.4
FAN07G1377 Fragaria x ananassa HOM05D002786 ORTHO05D003493 2.4e-19 98.2 61 77.0
Rhsim09G0037400 Rhododendron simsii HOM05D002786 ORTHO05D003493 2.4e-19 98.2 61 73.8
CANSAT78G0453 Cannabis sativa HOM05D002786 ORTHO05D003493 3.1e-19 97.8 61 75.4
Dinv22652 Davidia involucrata HOM05D002786 ORTHO05D003493 3.1e-19 97.8 61 75.4
Duzib151G0845 Durio zibethinus HOM05D002786 ORTHO05D003493 3.1e-19 97.8 61 73.8
Hma1.2p1_0412F.1_g147160 Hydrangea macrophylla HOM05D002786 ORTHO05D003493 3.1e-19 97.8 61 77.0
Duzib212G1023 Durio zibethinus HOM05D002786 ORTHO05D003493 4.1e-19 97.4 61 73.8
Oeu013399.2 Olea europaea HOM05D002786 ORTHO05D003493 4.1e-19 97.4 59 78.0
SGA_v2.0_scaffold109G31145 Striga asiatica HOM05D002786 ORTHO05D003493 4.1e-19 97.4 59 78.0
MSTRG.21983 Avicennia marina HOM05D002786 ORTHO05D003493 5.3e-19 97.1 59 81.4
COL.COLO4_10183 Corchorus olitorius HOM05D002786 ORTHO05D022444 5.3e-19 97.1 61 75.4
PSO017G6957 Papaver somniferum HOM05D002786 ORTHO05D003493 5.3e-19 97.1 61 77.0
PSO675G7863 Papaver somniferum HOM05D002786 ORTHO05D003493 5.3e-19 97.1 61 77.0
Sed0004282 Sechium edule HOM05D002786 ORTHO05D003493 5.3e-19 97.1 59 79.7
Sopen09g036180 Solanum pennellii HOM05D002786 ORTHO05D003493 5.3e-19 97.1 61 78.7
CiPaw.01G108500 Carya illinoinensis HOM05D002786 ORTHO05D003493 6.9e-19 96.7 61 73.8
MD00G1128300 Malus domestica HOM05D002786 ORTHO05D003493 6.9e-19 96.7 61 77.0
Potri.002G232600 Populus trichocarpa HOM05D002786 ORTHO05D003493 6.9e-19 96.7 60 78.3
RcHm_v2.0_Chr4g0409961 Rosa chinensis HOM05D002786 ORTHO05D003493 6.9e-19 96.7 60 75.0
Hund15147 Selenicereus undatus HOM05D002786 ORTHO05D003493 6.9e-19 96.7 61 72.1
vmacro00563 Vaccinium macrocarpon HOM05D002786 ORTHO05D003493 6.9e-19 96.7 61 72.1
Ca_07104_v3 Cicer arietinum L. HOM05D002786 ORTHO05D003493 9.0e-19 96.3 61 75.4
Ca_07106_v3 Cicer arietinum L. HOM05D002786 ORTHO05D003493 9.0e-19 96.3 61 75.4
Medtr7g021500 Medicago truncatula HOM05D002786 ORTHO05D003493 9.0e-19 96.3 61 75.4
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 9.0e-19 96.3 60 76.7
Manes.11G114100 Manihot esculenta HOM05D002786 ORTHO05D003493 1.2e-18 95.9 61 75.4
TPR.G2948 Trifolium pratense HOM05D002786 ORTHO05D003493 1.2e-18 95.9 61 75.4
Gohir.D09G204200 Gossypium hirsutum HOM05D002786 ORTHO05D003493 1.5e-18 95.5 61 72.1
TWI15G0371 Tripterygium wilfordii HOM05D002786 ORTHO05D003493 1.5e-18 95.5 60 75.0
AUR62037083 Chenopodium quinoa HOM05D002786 ORTHO05D003493 2.0e-18 95.1 61 75.4
HanXRQChr16g0527621 Helianthus annuus HOM05D002786 ORTHO05D003493 2.0e-18 95.1 60 76.7
EL10Ac5g11639 Beta vulgaris HOM05D002786 ORTHO05D003493 2.6e-18 94.7 61 75.4
Gorai.005G017400 Gossypium raimondii HOM05D002786 ORTHO05D003493 2.6e-18 94.7 61 73.8
HanXRQChr15g0471871 Helianthus annuus HOM05D002786 ORTHO05D003493 2.6e-18 94.7 61 75.4
TAR636G0823 Trochodendron aralioides HOM05D002786 ORTHO05D003493 2.6e-18 94.7 61 73.8
Migut.N00442 Erythranthe guttata HOM05D002786 ORTHO05D003493 3.4e-18 94.4 58 77.6
Gohir.A09G210800 Gossypium hirsutum HOM05D002786 ORTHO05D003493 3.4e-18 94.4 61 70.5
Manes.04G061600 Manihot esculenta HOM05D002786 ORTHO05D003493 3.4e-18 94.4 61 72.1
Psat3g188480 Pisum sativum HOM05D002786 ORTHO05D003493 3.4e-18 94.4 61 73.8
Duzib268G0977 Durio zibethinus HOM05D002786 ORTHO05D003493 4.5e-18 94.0 61 72.1
Eucgr.H02619 Eucalyptus grandis HOM05D002786 ORTHO05D003493 4.5e-18 94.0 61 73.8
Gohir.D10G130200 Gossypium hirsutum HOM05D002786 ORTHO05D003493 4.5e-18 94.0 61 72.1
Gorai.011G143900 Gossypium raimondii HOM05D002786 ORTHO05D003493 4.5e-18 94.0 61 72.1
Lj3C859G10 Lonicera japonica HOM05D002786 ORTHO05D003493 4.5e-18 94.0 61 70.5
MD04G1028800 Malus domestica HOM05D002786 ORTHO05D003493 5.9e-18 93.6 61 73.8
Peaxi162Scf00378g00635 Petunia axillaris HOM05D002786 ORTHO05D003493 5.9e-18 93.6 60 75.0
Phvul.008G018400 Phaseolus vulgaris HOM05D002786 ORTHO05D003493 5.9e-18 93.6 61 72.1
Ah.02g115110 Amaranthus hybridus HOM05D002786 ORTHO05D003493 7.6e-18 93.2 61 73.8
MSTRG.24604 Avicennia marina HOM05D002786 ORTHO05D003493 7.6e-18 93.2 59 76.3
Haze_11083 Corylus avellana HOM05D002786 ORTHO05D003493 7.6e-18 93.2 59 71.2
Gohir.A10G136400 Gossypium hirsutum HOM05D002786 ORTHO05D003493 7.6e-18 93.2 61 72.1
Ah.12g062150 Amaranthus hybridus HOM05D002786 ORTHO05D003493 1.0e-17 92.8 58 75.9
CAN.G710.41 Capsicum annuum HOM05D002786 ORTHO05D003493 1.0e-17 92.8 54 83.3
PGR135G0001 Punica granatum HOM05D002786 ORTHO05D003493 1.0e-17 92.8 60 73.3
Lalb_Chr02g0144511 Lupinus albus HOM05D002786 ORTHO05D003493 1.3e-17 92.4 61 73.8
TWI38G1748 Tripterygium wilfordii HOM05D002786 ORTHO05D003493 1.3e-17 92.4 60 71.7
Glyma.18G282800 Glycine max HOM05D002786 ORTHO05D003493 1.7e-17 92.0 61 70.5
HanXRQChr03g0062991 Helianthus annuus HOM05D002786 ORTHO05D003493 1.7e-17 92.0 61 70.5
TWI63G1206 Tripterygium wilfordii HOM05D002786 ORTHO05D003493 1.7e-17 92.0 61 72.1
Aqoxy2G03945 Aquilegia oxysepala HOM05D002786 ORTHO05D003493 2.2e-17 91.7 58 74.1
CiPaw.02G059800 Carya illinoinensis HOM05D002786 ORTHO05D003493 2.2e-17 91.7 61 70.5
ClCG08G003770 Citrullus lanatus HOM05D002786 ORTHO05D003493 2.2e-17 91.7 59 74.6
CsaV3_1G023100 Cucumis sativus L. HOM05D002786 ORTHO05D003493 2.2e-17 91.7 59 74.6
Lsat_1_v5_gn_4_22540 Lactuca sativa HOM05D002786 ORTHO05D003493 2.2e-17 91.7 61 68.9
Sed0001099 Sechium edule HOM05D002786 ORTHO05D003493 2.9e-17 91.3 59 74.6
VMungo1383G3085 Vigna mungo HOM05D002786 ORTHO05D003493 2.9e-17 91.3 61 70.5
arahy.Tifrunner.gnm1.ann1.0F4JWJ Arachis hypogaea HOM05D002786 ORTHO05D003493 3.8e-17 90.9 61 67.2
arahy.Tifrunner.gnm1.ann1.6D1JC0 Arachis hypogaea HOM05D002786 ORTHO05D003493 3.8e-17 90.9 61 67.2
Ca_11422_v3 Cicer arietinum L. HOM05D002786 ORTHO05D003493 3.8e-17 90.9 61 72.1
MELO3C010592.2 Cucumis melo HOM05D002786 ORTHO05D003493 3.8e-17 90.9 59 72.9
ECA234G1297 Erigeron canadensis HOM05D002786 ORTHO05D003493 3.8e-17 90.9 61 72.1
Cfa008548 Carpinus fangiana HOM05D002786 ORTHO05D003493 5.0e-17 90.5 59 71.2
Lsat_1_v5_gn_3_105661 Lactuca sativa HOM05D002786 ORTHO05D003493 6.5e-17 90.1 59 71.2
Lj5g0000254 Lotus japonicus HOM05D002786 ORTHO05D003493 6.5e-17 90.1 61 72.1
Lj1g0019142 Lotus japonicus HOM05D002786 ORTHO05D003493 8.5e-17 89.7 60 71.7
MBI07_g00622_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D003493 8.5e-17 89.7 63 68.3
MBI11_g04281_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D003493 8.5e-17 89.7 59 74.6
Medtr1g116957 Medicago truncatula HOM05D002786 ORTHO05D003493 8.5e-17 89.7 61 73.8
Potri.014G149600 Populus trichocarpa HOM05D002786 ORTHO05D003493 8.5e-17 89.7 61 73.8
TPR.G8888 Trifolium pratense HOM05D002786 ORTHO05D003493 8.5e-17 89.7 61 72.1
CDE07G0250 Ceratophyllum demersum HOM05D002786 ORTHO05D003493 1.1e-16 89.4 63 69.8
Lalb_Chr04g0258061 Lupinus albus HOM05D002786 ORTHO05D003493 1.1e-16 89.4 61 65.6
Oeu007217.1 Olea europaea HOM05D002786 ORTHO05D003493 1.4e-16 89.0 59 72.9
Glyma.08G258700 Glycine max HOM05D002786 ORTHO05D003493 2.5e-16 88.2 61 67.2
Lalb_Chr06g0164651 Lupinus albus HOM05D002786 ORTHO05D003493 2.5e-16 88.2 61 72.1
ATR0609G059 Amborella trichopoda HOM05D002786 ORTHO05D003493 3.2e-16 87.8 59 69.5
Phvul.007G001700 Phaseolus vulgaris HOM05D002786 ORTHO05D003493 3.2e-16 87.8 61 70.5
Psat6g243600 Pisum sativum HOM05D002786 ORTHO05D003493 3.2e-16 87.8 61 70.5
THA.LOC104800912 Tarenaya hassleriana HOM05D002786 ORTHO05D003493 3.2e-16 87.8 61 72.1
Glyma.10G297700 Glycine max HOM05D002786 ORTHO05D003493 4.2e-16 87.4 61 70.5
THA.LOC104815866 Tarenaya hassleriana HOM05D002786 ORTHO05D003493 7.2e-16 86.7 59 72.9
VMungo0720G0240 Vigna mungo HOM05D002786 ORTHO05D003493 1.2e-15 85.9 61 68.9
BcaC01g05937 Brassica carinata HOM05D002786 ORTHO05D003493 2.7e-15 84.7 59 71.2
A03p17820 Brassica napus HOM05D002786 ORTHO05D003493 2.7e-15 84.7 59 71.2
C03p20890 Brassica napus HOM05D002786 ORTHO05D003493 2.7e-15 84.7 59 71.2
BolC3t14469H Brassica oleracea HOM05D002786 ORTHO05D003493 2.7e-15 84.7 59 71.2
unitig_21.g20553 Utricularia gibba HOM05D002786 ORTHO05D003493 3.6e-15 84.3 59 67.8
BolC4t27579H Brassica oleracea HOM05D002786 ORTHO05D003493 4.6e-15 84.0 59 71.2
BcaB01g04029 Brassica carinata HOM05D002786 ORTHO05D003493 6.1e-15 83.6 59 71.2
BcaB06g28532 Brassica carinata HOM05D002786 ORTHO05D003493 6.1e-15 83.6 59 71.2
A04p24150 Brassica napus HOM05D002786 ORTHO05D003493 6.1e-15 83.6 59 71.2
C04p60880 Brassica napus HOM05D002786 ORTHO05D003493 6.1e-15 83.6 59 71.2
BraA04t17935Z Brassica rapa HOM05D002786 ORTHO05D003493 6.1e-15 83.6 59 71.2
CSS0009663 Camellia sinensis var. sinensis HOM05D002786 ORTHO05D003493 7.9e-15 83.2 53 69.8
ECA233G2610 Erigeron canadensis HOM05D002786 ORTHO05D003493 7.9e-15 83.2 57 70.2
Sp4g14060 Schrenkiella parvula HOM05D002786 ORTHO05D003493 7.9e-15 83.2 59 71.2
BcaB02g10406 Brassica carinata HOM05D002786 ORTHO05D003493 1.0e-14 82.8 59 69.5
BcaC02g11274 Brassica carinata HOM05D002786 ORTHO05D003493 1.0e-14 82.8 59 69.5
A05p13850 Brassica napus HOM05D002786 ORTHO05D003493 1.0e-14 82.8 59 69.5
C04p18220 Brassica napus HOM05D002786 ORTHO05D003493 1.0e-14 82.8 59 69.5
BolC4t23379H Brassica oleracea HOM05D002786 ORTHO05D003493 1.0e-14 82.8 59 69.5
BraA05t20321Z Brassica rapa HOM05D002786 ORTHO05D003493 1.0e-14 82.8 59 69.5
DCAR_002652 Daucus carota HOM05D002786 ORTHO05D003493 1.0e-14 82.8 59 69.5
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 1.3e-14 82.4 61 68.9
AT2G31660 Arabidopsis thaliana HOM05D002786 ORTHO05D003493 1.3e-14 82.4 61 68.9
BraA03t11046Z Brassica rapa HOM05D002786 ORTHO05D003493 1.3e-14 82.4 59 69.5
Nitab4.5_0000978g0140 Nicotiana tabacum HOM05D002786 ORTHO05D003493 1.3e-14 82.4 57 68.4
Thhalv10016172m.g Eutrema salsugineum HOM05D002786 ORTHO05D003493 1.8e-14 82.0 59 69.5
AL4G26900 Arabidopsis lyrata HOM05D002786 ORTHO05D003493 2.3e-14 81.6 58 70.7
Carub.0004s1296 Capsella rubella HOM05D002786 ORTHO05D003493 2.3e-14 81.6 58 70.7
CARHR125290 Cardamine hirsuta HOM05D002786 ORTHO05D003493 3.0e-14 81.3 59 69.5
Lj3g0017626 Lotus japonicus HOM05D002786 ORTHO05D003493 3.0e-14 81.3 58 70.7
Nitab4.5_0001526g0120 Nicotiana tabacum HOM05D002786 ORTHO05D003493 6.7e-14 80.1 48 81.2
Nitab4.5_0004758g0040 Nicotiana tabacum HOM05D002786 ORTHO05D003493 6.7e-14 80.1 57 70.2
Aa31LG5G5320 Aethionema arabicum HOM05D002786 ORTHO05D003493 1.1e-13 79.3 54 72.2
BcaB02g07490 Brassica carinata HOM05D002786 ORTHO05D003493 1.5e-13 79.0 61 62.3
BcaC08g44950 Brassica carinata HOM05D002786 ORTHO05D003493 1.5e-13 79.0 61 62.3
A07p24410 Brassica napus HOM05D002786 ORTHO05D003493 1.5e-13 79.0 61 62.3
C06p25840 Brassica napus HOM05D002786 ORTHO05D003493 1.5e-13 79.0 61 62.3
BolC6t37745H Brassica oleracea HOM05D002786 ORTHO05D003493 1.5e-13 79.0 61 62.3
BraA07t30088Z Brassica rapa HOM05D002786 ORTHO05D003493 1.5e-13 79.0 61 62.3
Pp3c15_21650 Physcomitrium patens HOM05D002786 ORTHO05D003493 3.3e-13 77.8 61 60.7
Mapoly0014s0213 Marchantia polymorpha HOM05D002786 ORTHO05D003493 4.3e-13 77.4 61 60.7
Pp3c9_22260 Physcomitrium patens HOM05D002786 ORTHO05D003493 4.3e-13 77.4 61 65.6
Sp5g03960 Schrenkiella parvula HOM05D002786 ORTHO05D003493 9.7e-13 76.3 61 60.7
Sabra02G0177400 Salix brachista HOM05D002786 ORTHO05D003493 1.3e-12 75.9 56 67.9
Aa31LG10G13510 Aethionema arabicum HOM05D002786 ORTHO05D003493 2.2e-12 75.1 61 57.4
AUR62036490 Chenopodium quinoa HOM05D002786 ORTHO05D003493 2.2e-12 75.1 48 77.1
Lsat_1_v5_gn_4_22560 Lactuca sativa HOM05D002786 ORTHO05D003493 2.2e-12 75.1 59 61.0
Carub.0005s2578 Capsella rubella HOM05D002786 ORTHO05D003493 2.8e-12 74.7 61 59.0
Gorai.006G228100 Gossypium raimondii HOM05D002786 ORTHO05D003493 3.7e-12 74.3 52 67.3
BcaB02g08232 Brassica carinata HOM05D002786 ORTHO05D003493 4.8e-12 73.9 58 62.1
BcaC02g10037 Brassica carinata HOM05D002786 ORTHO05D003493 4.8e-12 73.9 58 62.1
A04p02290 Brassica napus HOM05D002786 ORTHO05D003493 4.8e-12 73.9 58 62.1
C04p33640 Brassica napus HOM05D002786 ORTHO05D003493 4.8e-12 73.9 58 62.1
BraA04t15960Z Brassica rapa HOM05D002786 ORTHO05D003493 4.8e-12 73.9 58 62.1
Thhalv10005763m.g Eutrema salsugineum HOM05D002786 ORTHO05D003493 4.8e-12 73.9 55 65.5
SEGI_37762 Sequoiadendron giganteum HOM05D002786 ORTHO05D003493 4.8e-12 73.9 59 61.0
CARHR169430 Cardamine hirsuta HOM05D002786 ORTHO05D003493 1.1e-11 72.8 58 60.3
SMO169G0196 Selaginella moellendorffii HOM05D002786 ORTHO05D003493 4.1e-11 70.9 60 55.0
THA.LOC104803420 Tarenaya hassleriana HOM05D002786 ORTHO05D003493 4.1e-11 70.9 59 55.9
AL5G40900 Arabidopsis lyrata HOM05D002786 ORTHO05D003493 6.9e-11 70.1 61 57.4
AT3G59020 Arabidopsis thaliana HOM05D002786 ORTHO05D003493 6.9e-11 70.1 61 57.4
BolC4t24933H Brassica oleracea HOM05D002786 ORTHO05D003493 9.1e-11 69.7 64 57.8
Sabra14G0112800 Salix brachista HOM05D002786 ORTHO05D003493 9.1e-11 69.7 54 63.0
Lalb_Chr10g0092141 Lupinus albus HOM05D002786 ORTHO05D003493 2.6e-10 68.2 60 58.3
AagrBONN_evm.TU.Sc2ySwM_344.2799 Anthoceros agrestis HOM05D002786 ORTHO05D003493 1.3e-09 65.9 55 52.7
Peaxi162Scf00286g00442 Petunia axillaris HOM05D002786 ORTHO05D003493 2.2e-09 65.1 39 82.1
Phvul.005G111900 Phaseolus vulgaris HOM05D002786 ORTHO05D022444 7.2e-08 60.1 44 63.6
Lj1g0005822 Lotus japonicus HOM05D002786 ORTHO05D003493 1.2e-07 59.3 59 54.2
Lj1g0021376 Lotus japonicus HOM05D002786 ORTHO05D003493 1.2e-07 59.3 59 54.2


User provided reference genes

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